mRNA_A-nodosum_M_contig10520.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10520.2.1
Unique NamemRNA_A-nodosum_M_contig10520.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: D7G477_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G477_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.480e-27
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  214 YSNIFRKVKTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPETKSYSRLEKSTPSAQNKEKHRKKRTAWTGRAGEIAAKSPKRRSRMASLLGDDPPSPPP 606
            Y+ IF K+ T DGYLSG+ AV+LLRKSG+PQETL++VWALAD D DGRLS++EFCTAMHLI C   + LPLPE  S  R  K     Q+     K R    G+     AKSPKRRSR+ASL+     + PP
Sbjct:   19 YAKIFEKLDTEDGYLSGKRAVVLLRKSGVPQETLSKVWALADSDVDGRLSLKEFCTAMHLIGCFR-KGLPLPEVPS--RKPKKPKKRQSPGGDTKPREGQ-GKREITFAKSPKRRSRLASLVDPHQDANPP 145          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A8J5X7G7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7G7_DIALT)

HSP 1 Score: 77.4 bits (189), Expect = 1.120e-12
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKVKT-NDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPET 435
            ++MS  E A Y   F  + T   G+LSG  A  LL KSGLP+ETL+R+W L+D D DGRLS  EF  AMHL    T+R  PLP T
Sbjct:  165 WVMSDAEAARYDAYFASLDTARTGFLSGAQAAPLLSKSGLPKETLSRIWGLSDADRDGRLSQREFRAAMHLAMR-TARGTPLPAT 248          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A443HIZ0_BYSSP (Cytoskeletal adapter protein sagA n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=A0A443HIZ0_BYSSP)

HSP 1 Score: 77.0 bits (188), Expect = 1.440e-12
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKVKT-NDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPE 432
            ++++ +EKA+Y NIF  V T   G +SG  AV     + LP+E LA++W LAD D+DG+L+ +EF  AMHL+R   +R+ PLP+
Sbjct:  293 WLITPQEKAHYDNIFTTVDTAKAGAISGDQAVAFFTNAQLPEEVLAQIWDLADIDSDGQLTPDEFAVAMHLVRGQRARKEPLPQ 376          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A7S2URG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URG0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.160e-12
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKVKT-NDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLP 429
            YIM   E++ Y  +F + +  +DGY+ G+ AV L  KSGL ++ L  VW L DE  D RLS  EF  AMH+I C++ ++LP+P
Sbjct:  152 YIMYPNEQSRYEALFSQYEVKHDGYVYGKEAVALFSKSGLEKDQLRDVWNLVDEPVDNRLSTLEFAIAMHMIVCISKKKLPVP 234          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A6A5XWB7_9PLEO (Uncharacterized protein n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XWB7_9PLEO)

HSP 1 Score: 76.3 bits (186), Expect = 2.670e-12
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   91 NGTRLSPWLKISTSKYGMTTPKDHRFKQDHRYIMSAEEKANYSNIFRKVKT-NDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPET 435
            +GTRL     +S S+YG T P        + +++SA+EK +Y N+F KV T   G+++G  AV     SGL ++ LA +W LAD +++G+LS +EF  AM+LIR   +    LP T
Sbjct:  260 SGTRLQSSSPLSHSQYG-TPPTQSAQATGNDWLISAQEKDSYDNLFSKVDTYGRGFITGEQAVSFFSDSGLAEDVLAGIWDLADINSEGQLSRDEFAVAMYLIRQQRNPGKQLPTT 374          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A1B7NRA7_9EURO (Uncharacterized protein n=1 Tax=Emergomyces africanus TaxID=1955775 RepID=A0A1B7NRA7_9EURO)

HSP 1 Score: 75.1 bits (183), Expect = 6.560e-12
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKV-KTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPETKSYSRLEKSTPSAQNKEKHRKKRTAWTGRAGEIAAKSPKRRSRMASLLGDDPPSPP 603
            + ++ +EKA++  +F  + K N GY++G  AV     + LP+ETLA +W LAD D+DG+LS +EF  AM+L+R   + R PLP+    + +  S            +R A  G A +I  ++  +RS    L G D   PP
Sbjct:  323 WTITPQEKAHFDTVFTTIDKANLGYITGDQAVEFFTNAQLPEETLASIWDLADIDSDGQLSKDEFAVAMYLVRQQRTTREPLPQALPPALIPPSM-----------RRQAAPGPAPQIVPQNTAQRSAAEDLFGLDVFGPP 452          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: C4JMM6_UNCRE (Uncharacterized protein n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JMM6_UNCRE)

HSP 1 Score: 74.7 bits (182), Expect = 8.830e-12
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKV-KTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPE 432
            ++++ +EK ++ +IF  + K   GYLSG +AV     + LP+ETLA++W LAD D+DG+LS +EF  AM+L+R   + R PLP+
Sbjct:  278 WLITPQEKGHFDSIFNTIDKRRVGYLSGDDAVGFFANAQLPEETLAQIWDLADIDSDGQLSKDEFAVAMYLVRQQRTTREPLPQ 361          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: C1HBG2_PARBA (EF hand domain-containing protein n=5 Tax=Paracoccidioides TaxID=38946 RepID=C1HBG2_PARBA)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-11
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKV-KTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPE 432
            + ++ +EKA++  +F  V K N GY++G  AV     + LP+ETLA +W LAD D+DG+LS +EF  AM+L+R   + R PLP+
Sbjct:  287 WTITPQEKAHFDTVFTSVDKANLGYITGDQAVEFFTHAQLPEETLASIWDLADIDSDGQLSKDEFAVAMYLVRQQRTTREPLPQ 370          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A1J9QKE5_9EURO (Uncharacterized protein n=1 Tax=Emergomyces pasteurianus Ep9510 TaxID=1447872 RepID=A0A1J9QKE5_9EURO)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-11
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKV-KTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPE 432
            + ++ +EKA++  +F  V K N GY++G  AV     + LP+ETLA +W LAD D+DG+LS +EF  AM+L+R   + R PLP+
Sbjct:  286 WTITPQEKAHFDTVFATVDKANLGYITGDQAVEFFTNAQLPEETLASIWDLADIDSDGQLSKDEFAVAMYLVRQQRTTREPLPQ 369          
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Match: A0A2B7YQH5_9EURO (Uncharacterized protein n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7YQH5_9EURO)

HSP 1 Score: 73.9 bits (180), Expect = 1.630e-11
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  184 YIMSAEEKANYSNIFRKV-KTNDGYLSGRNAVLLLRKSGLPQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPE 432
            ++++ +EK ++  +F  V K N GY++G  AV     + LP+ETLA++W LAD D+DG+LS EEF  AM+L+R   + R PLP+
Sbjct:  284 WLITPQEKTHFDTVFTTVDKQNLGYITGDLAVEFFTNAQLPEETLAQIWDLADIDSDGQLSKEEFAVAMYLVRQQRTTREPLPQ 367          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10520.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G477_ECTSI2.480e-2754.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5X7G7_DIALT1.120e-1251.76Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A443HIZ0_BYSSP1.440e-1245.24Cytoskeletal adapter protein sagA n=2 Tax=Byssochl... [more]
A0A7S2URG0_9STRA2.160e-1244.58Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A6A5XWB7_9PLEO2.670e-1239.66Uncharacterized protein n=1 Tax=Aaosphaeria arxii ... [more]
A0A1B7NRA7_9EURO6.560e-1234.75Uncharacterized protein n=1 Tax=Emergomyces africa... [more]
C4JMM6_UNCRE8.830e-1244.05Uncharacterized protein n=1 Tax=Uncinocarpus reesi... [more]
C1HBG2_PARBA1.620e-1144.05EF hand domain-containing protein n=5 Tax=Paracocc... [more]
A0A1J9QKE5_9EURO1.620e-1144.05Uncharacterized protein n=1 Tax=Emergomyces pasteu... [more]
A0A2B7YQH5_9EURO1.630e-1144.05Uncharacterized protein n=1 Tax=Polytolypa hystric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10520contigA-nodosum_M_contig10520:3682..4507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G477
PFAMsEF-hand_4
Model size696
Max annot lvl2759|Eukaryota
KEGG koko:K20045
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.06e-28
EggNOG OGsKOG0998@1|root,KOG0998@2759|Eukaryota
Descriptionendocytosis
Cds size693
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866433.019457-CDS-A-nodosum_M_contig10520:3682..40061680866433.019457-CDS-A-nodosum_M_contig10520:3682..4006Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10520 3683..4006 -
1680866433.030868-CDS-A-nodosum_M_contig10520:4138..45071680866433.030868-CDS-A-nodosum_M_contig10520:4138..4507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10520 4139..4507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10520.2.1prot_A-nodosum_M_contig10520.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10520 3683..4507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10520.2.1

>prot_A-nodosum_M_contig10520.2.1 ID=prot_A-nodosum_M_contig10520.2.1|Name=mRNA_A-nodosum_M_contig10520.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=231bp
LGRLDWTKKLYTTTSHGPRYCTTVATRILANGTRLSPWLKISTSKYGMTT
PKDHRFKQDHRYIMSAEEKANYSNIFRKVKTNDGYLSGRNAVLLLRKSGL
PQETLARVWALADEDTDGRLSVEEFCTAMHLIRCVTSRRLPLPETKSYSR
LEKSTPSAQNKEKHRKKRTAWTGRAGEIAAKSPKRRSRMASLLGDDPPSP
PPRTRDTGRDQSRRTSNAGLRMEALHQEHEQ
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mRNA from alignment at A-nodosum_M_contig10520:3682..4507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10520.2.1 ID=mRNA_A-nodosum_M_contig10520.2.1|Name=mRNA_A-nodosum_M_contig10520.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=826bp|location=Sequence derived from alignment at A-nodosum_M_contig10520:3682..4507- (Ascophyllum nodosum dioecious)
TTGGGAAGGCTAGATTGGACAAAAAAACTTTACACCACGACATCACATGG ACCTCGGTATTGTACAACAGTAGCGACACGCATCCTCGCTAACGGAACAC GCTTATCCCCGTGGTTAAAAATTTCGACTTCCAAGTACGGAATGACAACT CCGAAGGATCACAGGTTCAAGCAAGACCACCGATATATCATGTCCGCTGA GGAAAAGGCGAACTACTCGAATATCTTCCGAAAAGTGAAGACTAATGATG GTTACCTCAGTGGTAGGAATGCGGTGCTTCTGCTTCGCAAGTCAGGCCTT CCGCAGGAGACGCTGGCTCGCGTGTGGGCACTGGCCGATGAAGATACGGA TGGCAGATTATCAGTAGAAGTGAGACTTTCTTGTGCTATTGTTCGGAGAA CATGCGGAACTCTTTTGGTGCCGTTTCCTTATCCTGAAAAAATCACGTCG ACGGGATGATCAAATTGATGCTCGGTTCGCGTGGTTTTATACCCTCTTCA GGAGTTTTGCACCGCGATGCATCTCATTCGCTGCGTGACTTCAAGGAGAC TCCCGCTCCCTGAAACCAAGTCGTACTCTAGACTTGAGAAGTCCACGCCG TCCGCGCAAAACAAAGAAAAACATCGGAAGAAGAGGACGGCTTGGACAGG CAGAGCGGGAGAAATTGCGGCGAAGTCGCCCAAGAGACGATCCCGTATGG CATCCCTTTTGGGCGACGATCCTCCTAGCCCACCGCCACGTACTCGCGAT ACAGGCAGGGACCAATCCAGACGAACATCGAATGCTGGCCTTAGGATGGA GGCTCTTCATCAAGAACATGAGCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10520:3682..4507-

>mRNA_A-nodosum_M_contig10520.2.1 ID=mRNA_A-nodosum_M_contig10520.2.1|Name=mRNA_A-nodosum_M_contig10520.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=693bp|location=Sequence derived from alignment at A-nodosum_M_contig10520:3682..4507- (Ascophyllum nodosum dioecious)
TTGGGAAGGCTAGATTGGACAAAAAAACTTTACACCACGACATCACATGG
ACCTCGGTATTGTACAACAGTAGCGACACGCATCCTCGCTAACGGAACAC
GCTTATCCCCGTGGTTAAAAATTTCGACTTCCAAGTACGGAATGACAACT
CCGAAGGATCACAGGTTCAAGCAAGACCACCGATATATCATGTCCGCTGA
GGAAAAGGCGAACTACTCGAATATCTTCCGAAAAGTGAAGACTAATGATG
GTTACCTCAGTGGTAGGAATGCGGTGCTTCTGCTTCGCAAGTCAGGCCTT
CCGCAGGAGACGCTGGCTCGCGTGTGGGCACTGGCCGATGAAGATACGGA
TGGCAGATTATCAGTAGAAGAGTTTTGCACCGCGATGCATCTCATTCGCT
GCGTGACTTCAAGGAGACTCCCGCTCCCTGAAACCAAGTCGTACTCTAGA
CTTGAGAAGTCCACGCCGTCCGCGCAAAACAAAGAAAAACATCGGAAGAA
GAGGACGGCTTGGACAGGCAGAGCGGGAGAAATTGCGGCGAAGTCGCCCA
AGAGACGATCCCGTATGGCATCCCTTTTGGGCGACGATCCTCCTAGCCCA
CCGCCACGTACTCGCGATACAGGCAGGGACCAATCCAGACGAACATCGAA
TGCTGGCCTTAGGATGGAGGCTCTTCATCAAGAACATGAGCAG
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