mRNA_A-nodosum_M_contig1052.25.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1052.25.2
Unique NamemRNA_A-nodosum_M_contig1052.25.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: D7FLD6_ECTSI (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLD6_ECTSI)

HSP 1 Score: 600 bits (1548), Expect = 5.210e-207
Identity = 301/440 (68.41%), Postives = 353/440 (80.23%), Query Frame = 3 
Query:  168 HRTPTWNS--RPVLRMSPENGRLGEEHETPLVFPRSMLKREKLKISNDMGVGTMAWGDEKAGFVSDPKHRPRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNAYKSTTGGKTVKRGRQRDPMKRQNVKFLNRS--WIPND 1475
            H  P   S  +  L+MS E G      + P VFPRSMLK+ KL+I N MGVGTMAWGD+K GFVSDPK++P+ GEFNPADLQGAYN LM+AGITFFDTSDVYG++S+  G SAEQLLGRFAEEN  G+P+I AKYMPI WTK LIGGPWRAGRRA+AKAL+ TLE+GGW YVDLYQ+HFPFPY GGM+ALAEGL+ AC+RG+CRSVGVSNFNAQQMREFSEKL KHGI+LASNQ E+SLVN+DA+ +GTL EC+RLGVVP+ HTPLAKGLATGVYTASNPTGG  G PKY F+DL P+ PIHTAL  VAKRVEGRL  EAKEEQ+R F+ +++ +                +TTQVA+NYVRAKG+VPLPGVKTKAHADE+VGCLGW L  +DV IL+ A++AYK +TGGKT++RG+ RDPMKRQ + F  +S  W   D
Sbjct:   28 HHAPLARSYAKAALQMSTEGG-----DDKPFVFPRSMLKKGKLEIPNYMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGRFAEEN--GRPLIGAKYMPIFWTKFLIGGPWRAGRRAIAKALTATLEKGGWAYVDLYQVHFPFPYFGGMDALAEGLSRACDRGLCRSVGVSNFNAQQMREFSEKLGKHGITLASNQFEYSLVNRDAETDGTLAECKRLGVVPLGHTPLAKGLATGVYTASNPTGGKMGDPKYLFKDLFPVTPIHTALAAVAKRVEGRLAEEAKEEQRRAFEALEDGEEQAPPPQLKKI-----STTQVAINYVRAKGVVPLPGVKTKAHADEIVGCLGWSLLPEDVAILEAAHDAYKVSTGGKTIQRGKDRDPMKRQAISFGQKSGGWASQD 455
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A835Z353_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z353_9STRA)

HSP 1 Score: 382 bits (982), Expect = 9.920e-123
Identity = 201/405 (49.63%), Postives = 267/405 (65.93%), Query Frame = 3 
Query:  219 NGRLGE-EHETPLVFPRSMLKR-EKLKISNDMGVGTMAWGDEKAGFVSDPKHRPR--RGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSM-GQPVIAAKYMPILWTKVLIGGPW-RAGRRAVAKALSNTLERGGWGYVDLYQLHFPFP-YVGGMEALAEGLAAACERGMCRSVGVSNFNAQQ--MREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNAYKSTTGGKTVKR 1406
            +G L E + +TP   P+S+L R  K ++ +++G GT+AWGD + GF+ DPK RP+  +GEFNPADLQGA+  ++ +G+ FFDT++ YG +S + G+SAEQLLGRF +E+    +P++ AKY P+LW    +GG   RAGRRAV KAL  +L+R G  YVDLY LHFP   Y+GG+ ALAEGLA A ERG+CR VGV N N  Q  +R+F EKL K  + L +NQIE+SL +Q A E+GT+ EC+R G++  AHTPL +GLATGV TAS+PTGG  G P+Y F+DL PL P+H AL  VA     RL  +     ++V                        TT Q+++NY+RAKGLVPLPG+  +  A EV GCLGW L  ++V +LDDAY  YK+  GG  VKR
Sbjct:   15 SGELPEWDADTPFTIPKSLLSRVAKFEVPHEIGTGTLAWGDSERGFIGDPKQRPKAAQGEFNPADLQGAFETMLESGLAFFDTAETYGSKSIKDGMSAEQLLGRFIQESQADARPMVGAKYTPVLWPGAAVGGLLPRAGRRAVVKALQRSLDRLGLAYVDLYSLHFPTGRYIGGLGALAEGLAQARERGLCRHVGVCNMNGAQASVRDFKEKLAKFDVPLIANQIEYSLADQTAAEDGTIAECKRQGILVFAHTPLGRGLATGVNTASDPTGGRPGAPRYVFRDLEPLLPVHQALAAVATMASSRLSQDESAPIRKV-----------------------TTTQQISINYIRAKGLVPLPGITNRKQALEVAGCLGWRLNGEEVEMLDDAYQQYKAKAGGAVVKR 396
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S2SPM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPM1_9STRA)

HSP 1 Score: 308 bits (790), Expect = 3.230e-93
Identity = 171/374 (45.72%), Postives = 225/374 (60.16%), Query Frame = 3 
Query:  288 LKISNDMGVGTMAWGDEKAGFVSDPKHRPRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPKYNFQDLMP----LAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNAYKSTTGGKT 1397
            L I N +GVGT+AWG+ K GF+S         ++NP DLQ  Y+ L+  G++FFDT+DVYGH+  R G S EQLLG F   N     ++A KY P L+T + +GG  RAGRRAV  AL  +LER    +VD+YQLHFPFPY+GG  AL EGLA   E G+C +VGV NFNA+Q+    E+ +  G+ L SNQ++FSL++    ++GT+  CRRL +  +AH+PLA GLA+G YTA NPTGG     K  ++  +P    LAP+H  L +VA+ V  R       E+K++                        +  QVALNYV AKG VPLPGV T   ADEVVGC+GW L+  DV  L+ A  A KS+   +T
Sbjct:  141 LSIPNGIGVGTLAWGEAKRGFMS---------KYNPGDLQVTYDTLLEGGVSFFDTADVYGHKYLRDGHSTEQLLGEFNARNGEHSAMVATKYTPKLFTNLRVGGGLRAGRRAVVAALEQSLERLDRSFVDVYQLHFPFPYIGGNRALIEGLAMCKEEGLCDAVGVCNFNARQIEVAYERFEDCGVPLVSNQVKFSLLHPKPLQDGTIKTCRRLDITVLAHSPLAGGLASGRYTAMNPTGGDFVKNKLQYKYPLPRLQRLAPLHAGLEDVARSVAAR-------ERKKI------------------------SPAQVALNYVAAKGAVPLPGVTTPKDADEVVGCVGWSLKPKDVKKLEKAVRACKSSQAVRT 474
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7R9ZHW1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHW1_9STRA)

HSP 1 Score: 264 bits (675), Expect = 6.550e-76
Identity = 152/364 (41.76%), Postives = 218/364 (59.89%), Query Frame = 3 
Query:  294 ISNDMGVGTMAWGDEKAGFVSDPKHRPR---RGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAG--LPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNA 1370
            I N +G GT AWG+E+ GF    K + +    G +   DLQ +Y+ LM +GI F DTS+ YG    +  LS+E ++GR  +EN+   P++A+ +    W  +L GG  R GRR V  AL  T ER G   V+LYQ+     Y+G   ALA+GL+   ++G+C  VGV N    +MR  ++K+++ G SL SNQ +FSL N+ A ++G +  C+ +GV+P+AHTPL  GLATGVY+++NP+GG AG   P Y  + L    P+ + +  V  +V+ RL  E ++EQ R  +  Q  D                TTTQ+A+NYV AKG VP+PGVKT A A+EV+GCLGW L  ++V +LD A +A
Sbjct:  172 IPNRIGFGTAAWGNERKGFKVGKKLKKKDIKAGRYLAGDLQLSYDTLMESGIVFVDTSESYGRALEKKSLSSEHIVGRCVDENARVDPLVASTFANP-WMHLLEGGGVRFGRRGVVNALEQTCERLGVSGVELYQVPAAL-YLGFPNALADGLSECLDKGLCNYVGVCNMGKLRMRSMAKKMERRGASLTSNQFKFSLTNRKAWKSGLIGACKDIGVIPIAHTPLDGGLATGVYSSTNPSGGKAGGKFP-YELKTLNKWQPLTSMMQTVQSKVKTRLEREKRDEQSRYKRGAQPRD-----------INTDVTTTQIAINYVVAKGCVPIPGVKTVAQAEEVLGCLGWGLNDEEVQLLDSAADA 521
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S1ZER9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZER9_TRICV)

HSP 1 Score: 256 bits (655), Expect = 2.680e-75
Identity = 144/334 (43.11%), Postives = 203/334 (60.78%), Query Frame = 3 
Query:  375 RRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAG--LPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNA 1370
            R G +   DLQ AYN L+ +G+TF DTS+ YG + A+  LSAE +LGR  ++N    P++A+ +    W  +L GG  R GRR+V KAL  T ER G   ++LYQ+     Y+G   ALA+GL+   +RG+C  VGV+N    +MR  + K+++ G SL SNQ  FSL N+ A ++G +  C+ LGV+P AHTPL  GLATG+YT +NP+GG AG   P Y+ + L  + P+   +  V  +V+ RL  E ++EQ R+                        TTTQ+ALNYV AKG VP+PG+KT A A+EV+GCLGW L +++V +LD A +A
Sbjct:   13 RGGMYLAGDLQMAYNTLLESGVTFVDTSESYGSKMAKKSLSAEHILGRCIDDNPAIDPLVASTFANP-WMHILNGGGVRFGRRSVVKALEQTCERLGTSSIELYQVPAAL-YLGFPNALADGLSDCLDRGLCNYVGVTNMGKYRMRSMARKMERRGASLTSNQFAFSLTNRKAWKSGLISACKDLGVIPFAHTPLDGGLATGLYTNTNPSGGKAGGNFP-YDLKKLNRIQPLTGMMETVQSKVKSRLQREKRDEQSRM---------KGYRDQPMGNINTDPTTTQIALNYVVAKGCVPIPGIKTVAQAEEVLGCLGWGLTEEEVQLLDSAADA 334
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S1TWF0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWF0_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.350e-74
Identity = 165/383 (43.08%), Postives = 213/383 (55.61%), Query Frame = 3 
Query:  258 FPRSMLKREK-LKISNDMGVGTMAWGDEKAGFVS-----DPKHRPRRGE--FNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFP-YVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNAYKS 1379
            F   M  R+K   +++ MGVGTMAWG+   GFV+         R   G+  F   DL  AY  L+  G+ FF+T++VYG  SA     AEQLLG+F ++N      IA   MP L  +   GG  R GRR V  ++  +L+R G GY  L QL  P   Y+GG   LA GLA A +RG+   VGV N NA+ + +    L+K GI LA+NQIE SL NQDA  +GT+  C+RLGV  +A +PL  GLATGVYT  NP+GG  G PK+  Q+L+P   +HT L ++AK V  RL     EEQ  V                        T TQV+LN+VRAKG VPLPGVKT+ HA EV+  L W L + +V  LD    A ++
Sbjct:   97 FSDFMATRKKSFDVASGMGVGTMAWGEAGVGFVTGTGGTSTGQRKTFGKSLFAAGDLAAAYKVLVEGGVDFFETNEVYGLGSAGENHQAEQLLGQFRQQNPKFPADIAITVMPSL--RDPHGGGLRFGRRGVLASIQGSLDRQGVGYAKLVQLGAPGKTYIGGRGKLAAGLAMAKQRGLVEHVGVVNHNAKDLEKMHGLLKKEGIDLATNQIELSLTNQDALFDGTIGACKRLGVKVLASSPLGGGLATGVYTVGNPSGGRGGKPKFTPQELVPFNRLHTELEQIAKEVSARL-----EEQDDV------------------------TPTQVSLNWVRAKGAVPLPGVKTEKHAKEVLESLKWSLTRKEVDRLDRVAQAARA 448
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S1FNC9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC9_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.380e-72
Identity = 151/380 (39.74%), Postives = 218/380 (57.37%), Query Frame = 3 
Query:  279 REKLKISNDMGVGTMAWGDEKAGF----------VSDPKHRPRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRF-----AEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFP-FPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQK-HGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGG--AAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDA 1361
            REK ++ N +G G++AWGD   GF          VS          F+  DL+ AY  L+  GI+F DT + YG +     LS+E L+GR        E  +GQP+++ K++P L ++       RAG  AV +A   + +R   G +DLYQL  P + Y GG  AL  GLA   + G+CR VGVSN NA++++ F ++L+  HGI LA+NQ+  SLVN+    +GT+D C ++GV  +AHTPLA GLA+G+YT +NPTGG   A L K+N +DL   APIH AL  V    + R+  E + + K+  +++ E  N               T  QV++N+VRAKG VP+PG+K K  A+E++ CL + L  D+V +LD A
Sbjct:   57 REKFEVPNGIGFGSLAWGDVDRGFMPTRSSFYQGVSTTSGLNSMDSFDVNDLEDAYLTLLRGGISFADTCESYGAKMRNRKLSSEHLIGRIRSSCLGREKGIGQPILSNKFVPKLMSRSFDAFDVRAGSDAVLRACRASADRMEVGVIDLYQLSAPTYLYAGGRTALIAGLAGCVQSGLCRRVGVSNMNAKKVQHFYDRLRDDHGIRLATNQVSLSLVNRKVIFDGTVDYCEKMGVTVVAHTPLAGGLASGLYTEANPTGGDRTARLDKFNMKDLRKFAPIHEALDVVCDMCDRRVKKELRAKMKQA-KDLAER-NPRKFQKPKDKVINDVTPAQVSINWVRAKGAVPIPGIKNKQDANELLDCLRFELTDDEVAMLDRA 434
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S0KBS1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBS1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 6.310e-69
Identity = 144/377 (38.20%), Postives = 208/377 (55.17%), Query Frame = 3 
Query:  252 LVFPRSMLKREKLKISNDMGVGTMAWGDEKAGFVSDPKHR-----PRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFP-FPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXX-TTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDA 1361
            L+ P+ +     + I   +G  T+ WG+E    +   K R      ++G F  AD + ++  LM  G+TF +TS  YG        SAE L+ + +  N    PV++ KY P+         P      +V K+L  +LER    YVDLYQ+ F  F ++     +A+GLA   +RG+C +VGV N  A  ++ F+ KL+  G +L++NQ+EFSLVN+ A  +GTL+ C  LGV+P+A  PL   LA+GVYTASNPTGG  G  KY+F  L PL P+H AL ++ K    R+W E        F E +EA+N                TTTQ++L YV+AKGLVPL  V+ K  A E++G +G+ L +D+V +LD A
Sbjct:   23 LIVPKPLAT--DIDIPEGIGFTTIDWGNEGENKLYSSKERITKKQAKKGIFTAADCRVSFKTLMEGGVTFVETSPKYGKHLRGEEQSAEHLVAQGSAANWKKTPVLSTKYNPV---------PILQSSGSVVKSLEKSLERLETSYVDLYQVDFQKFHFLSSKSKIADGLATCIDRGLCTNVGVCNLGAGALQSFASKLEDRGANLSTNQVEFSLVNRQALFDGTLEMCEDLGVLPLAKNPLGNDLASGVYTASNPTGGRVGQAKYDFNTLGPLKPLHDALADIRKVARDRMWDE--------FYERKEANNRNYKLPPISGDFDREVTTTQISLMYVKAKGLVPLMEVRNKRDALELLGVVGYSLTEDEVKVLDKA 380
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S3PZQ1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZQ1_9STRA)

HSP 1 Score: 237 bits (605), Expect = 9.050e-66
Identity = 145/381 (38.06%), Postives = 211/381 (55.38%), Query Frame = 3 
Query:  234 EEHETPLVFPRSMLKREKLKISNDMGVGTMAWGDEKAGFVSDPKHRPR---RGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHG-ISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYTASNPTGGAAGLPK-YNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDDA 1361
            E+ E  + F         L I+N +G  T AWGD   GF +  K + +   RG+F   DLQ AY+ LM+ GITF DTS+ YG  S    LSAEQ+L +  + N    P+I +  M   W  V+ G   R GR A+ K +  + ER G   +D+YQ+     YVG  + +A  L  A ++G+  +VGVS  +  +M  F++KL   G  SL SNQ EFSLVN+ A ++G +  C+ LG++P+A  PL  GLA+GV++A+NPTGG     + ++F+ L     +H  L  V  +V+ RL     E++    ++ ++                  +TTQ+A+NYV AKG VP+P VK    ADE++GCLGW L  D+V +LDDA
Sbjct:  162 EDEEFYIDFQADHDDENDLHITNRIGFTTKAWGDVDEGFKAGKKLKKKDIKRGKFLAGDLQVAYDKLMDNGITFIDTSENYGLVSRPKSLSAEQILFQCMDTNVDSSPIIGST-MSNPWKSVVQGTGVRFGRSAILKTIEASAERLGTSAIDVYQVPSKMFYVGAPKTVASALCMAMDQGLINNVGVSGMSKSRMSSFNKKLNSIGSYSLTSNQFEFSLVNRKAFKSGLISACKSLGIIPVARNPLGNGLASGVWSATNPTGGEVSKKQPFDFKTLDKYTTLHDMLATVQMKVQKRL-----EKENNALKDRRDR-------YGGAPMNTEVSTTQIAINYVVAKGCVPMPSVKNPKEADELIGCLGWSLLDDEVKMLDDA 529
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Match: A0A7S2JAA3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JAA3_9EUKA)

HSP 1 Score: 231 bits (590), Expect = 1.720e-65
Identity = 148/397 (37.28%), Postives = 208/397 (52.39%), Query Frame = 3 
Query:  177 PTWNSRPVLRMSPENGRLGEE-HETPLVFPRSMLKREKLKISNDMGVGTMAWGDEKAGFVSDPKHRPRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLGRFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGGWGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMREFSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAKGLATGVYT-ASNPTGGAAG-LPKYNFQDLMPLAPIHTALVEVAKRVEGRLWLEAKEEQKRVFQEMQEADNXXXXXXXXXXXXXXXTTTQVALNYVRAKGLVPLPGVKTKAHADEVVGCLGWWLQQDDVGILDD 1358
            P W    VL  SP  G L       P  F R             +GVGTM+WGD   G+            FN  DL  A++ L+  G+  FDTS+VYG++  R   ++EQLL    E      P+I+ K+MP+ WT +L GG  R GR+AV +A  N++ R G G +DLY LH P PY+GG  AL EGLA A + G+CR VGV N+NA Q+RE   + ++ G+ L +NQ  +SL N + + +GTL+ C  LGV P+AHTPLA GLA+  Y  A + +GG  G + +++ + L  L+PI+ A+  V                     E+  A++               +  QVAL Y  AKG +P+PGV   A A +VV  LGW L+ ++V  L +
Sbjct:    2 PAWTDEAVL-PSPRQGPLERGLMRVPDAFTRPPNSVAPPVTLPPIGVGTMSWGDPLRGWGQ---------RFNSTDLSEAFDVLLEGGVNMFDTSEVYGYQGRRLHETSEQLLSSLIETRQ--PPLISTKFMPVPWTHLLAGGGLRFGRQAVVQAARNSIVRLGVGQLDLYSLHAPIPYLGGRRALFEGLAEAYDLGLCRGVGVCNYNAAQVREAYLECRRLGVPLVANQFRYSLFNVERELDGTLETCLELGVAPIAHTPLAGGLASTRYAHALSRSGGQRGRIGRFDSRLLHMLSPIYEAMSHVGG-------------------ELGAAESNGH------------SEAQVALAYTMAKGCIPVPGVNNGAQARDVVAALGWELELNEVAALTE 355
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1052.25.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD6_ECTSI5.210e-20768.41Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A835Z353_9STRA9.920e-12349.63NADP-dependent oxidoreductase domain-containing pr... [more]
A0A7S2SPM1_9STRA3.230e-9345.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9ZHW1_9STRA6.550e-7641.76Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1ZER9_TRICV2.680e-7543.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1TWF0_9STRA2.350e-7443.08Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S1FNC9_9STRA8.380e-7239.74Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0KBS1_9STRA6.310e-6938.20Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S3PZQ1_9STRA9.050e-6638.06Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2JAA3_9EUKA1.720e-6537.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1052contigA-nodosum_M_contig1052:241248..255947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLD6
PFAMsAldo_ket_red
Model size2291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons10
Evalue1.05e-211
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-12_007760.1
Descriptionoxidoreductase activity
Cds size1416
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1052.25.2prot_A-nodosum_M_contig1052.25.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1052 241313..255137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866432.5125403-UTR-A-nodosum_M_contig1052:241247..2413121680866432.5125403-UTR-A-nodosum_M_contig1052:241247..241312Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 241248..241312 +
1680866432.621648-UTR-A-nodosum_M_contig1052:255137..2559471680866432.621648-UTR-A-nodosum_M_contig1052:255137..255947Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 255138..255947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866432.525029-CDS-A-nodosum_M_contig1052:241312..2415121680866432.525029-CDS-A-nodosum_M_contig1052:241312..241512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 241313..241512 +
1680866432.535633-CDS-A-nodosum_M_contig1052:246514..2466561680866432.535633-CDS-A-nodosum_M_contig1052:246514..246656Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 246515..246656 +
1680866432.5452964-CDS-A-nodosum_M_contig1052:247224..2473561680866432.5452964-CDS-A-nodosum_M_contig1052:247224..247356Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 247225..247356 +
1680866432.5550456-CDS-A-nodosum_M_contig1052:248907..2490571680866432.5550456-CDS-A-nodosum_M_contig1052:248907..249057Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 248908..249057 +
1680866432.5637221-CDS-A-nodosum_M_contig1052:249749..2498661680866432.5637221-CDS-A-nodosum_M_contig1052:249749..249866Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 249750..249866 +
1680866432.5720003-CDS-A-nodosum_M_contig1052:251654..2517781680866432.5720003-CDS-A-nodosum_M_contig1052:251654..251778Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 251655..251778 +
1680866432.5809438-CDS-A-nodosum_M_contig1052:252312..2524641680866432.5809438-CDS-A-nodosum_M_contig1052:252312..252464Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 252313..252464 +
1680866432.5898762-CDS-A-nodosum_M_contig1052:253472..2536361680866432.5898762-CDS-A-nodosum_M_contig1052:253472..253636Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 253473..253636 +
1680866432.602299-CDS-A-nodosum_M_contig1052:254276..2543971680866432.602299-CDS-A-nodosum_M_contig1052:254276..254397Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 254277..254397 +
1680866432.610597-CDS-A-nodosum_M_contig1052:255023..2551371680866432.610597-CDS-A-nodosum_M_contig1052:255023..255137Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 255024..255137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1052.25.2

>prot_A-nodosum_M_contig1052.25.2 ID=prot_A-nodosum_M_contig1052.25.2|Name=mRNA_A-nodosum_M_contig1052.25.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=472bp
MPPSKVLVLLCLWGPITTGAFVTPSIHAAIAVRRHRTPTWNSRPVLRMSP
ENGRLGEEHETPLVFPRSMLKREKLKISNDMGVGTMAWGDEKAGFVSDPK
HRPRRGEFNPADLQGAYNALMNAGITFFDTSDVYGHRSARAGLSAEQLLG
RFAEENSMGQPVIAAKYMPILWTKVLIGGPWRAGRRAVAKALSNTLERGG
WGYVDLYQLHFPFPYVGGMEALAEGLAAACERGMCRSVGVSNFNAQQMRE
FSEKLQKHGISLASNQIEFSLVNQDAKENGTLDECRRLGVVPMAHTPLAK
GLATGVYTASNPTGGAAGLPKYNFQDLMPLAPIHTALVEVAKRVEGRLWL
EAKEEQKRVFQEMQEADNNDDSPPPPPPKQRRITTTQVALNYVRAKGLVP
LPGVKTKAHADEVVGCLGWWLQQDDVGILDDAYNAYKSTTGGKTVKRGRQ
RDPMKRQNVKFLNRSWIPNDE*
back to top

mRNA from alignment at A-nodosum_M_contig1052:241248..255947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1052.25.2 ID=mRNA_A-nodosum_M_contig1052.25.2|Name=mRNA_A-nodosum_M_contig1052.25.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=14700bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:241248..255947+ (Ascophyllum nodosum dioecious)
CGTTGTTGAACGGGTGATGTGCTCTTGTGTCCCCTACGTCCATTGCGCCT
GTACCACCCGAAGGAATGCCGCCCTCAAAGGTACTAGTGCTGCTGTGCCT
GTGGGGACCGATAACGACCGGAGCGTTCGTCACGCCTTCAATTCACGCTG
CTATAGCTGTGAGGCGACATAGGACTCCAACATGGAACTCTCGACCCGTA
CTCCGCATGTCCCCGGAAAACGGACGACTGGGTGAGGAACATGAGACGCC
GCTGGTATTTCCAAGGTGAGGCTTGCATGTGCTCGCGGGGTTCCAGTCTA
CATTTCAGCGTGTTATATGTCCCATACTCAGTTCCATGCCAAGCTCAGAA
GAGTGTTTCCTTAGCCGATGTATGATGCTTGTGCTTCGTACTTTCCTCAA
CGCGGCAGAACTCCTTATTTACTATTGTAGTATTTAAATTGCTTGATCCT
GGTATGCAGCCCCGGTAGCTCAAGAGGTAACCTCGTAACCTTCTGACACG
TTGGGACGTGAGTTCGATCCCGGTAAACGGGATTTTTCTCACTATAAAAT
AAAATAAAATAAAATAAAATAAAAATGTCCAACGAGTTGAGAAAGATTAA
ATCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGG
CTGAATCCTTCTCGTGAGAAAAATTAAGGCACGCACCGCAGAAGGAAGGT
GGATGAAAAATCCTGTGTGACCTTCCTCCTGTATGAACCCGGCTGGTACG
TCCAACGAACTTGATGTCCGGAATGAATGGGAAGAAAACAAAAACAACAG
TATGTATGTTCACACCATTTTTCGGGTTGGCAAGCAATACGCTGAATATA
TGTATGGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCC
CGTGCGTGCCTGTGGAACCCGTTTAAATGCCATCAAGAGGTTTTGTATTG
CAGCCAATGATCCCACCTAAACGTTTTGACATTTTTCCCCCTGGCTGGGA
GATGCTCAGAAGGTCTAGTATAGATGCGTTCAGATTTTTCTTCAAACAAC
ATGTAACAAAAGCATGGATCAACCGGGTAAGGTTGCCAGTCCTGCACGTG
GTCAGCTGGACAGGGAAGATAAATATTTCCCTGTCCGCGTTCGCGCCTGA
GAATTTGGTCTCGCGAGACGGGTTTTGCAGCCCCGTCTCGGGTCAGCCTG
CTCATCTCTATACTCAAGCTGAATCTTGTGCTTACTTACGGGATTCCTCC
TTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATTTATTTTAA
ACCGCCATACACCATCGGGTCAGTCCCGAGTTTATCGAGTCACGCAATTG
CGTACCGATGGCGTTCACTGCTGAGAGTCCGCCGGCACAGGGCCAGTAAA
CCTCAAGGTAGTTCCGAACGGGTGCTGCCTCGGCAAGTCACCATGGACCA
ATTAATATACACGCCTCTCTTTCCCACACCCATTATTGGTATGAAGTGGT
CATGTTGAAAGTAATCATAATACGGTAATTATGTAATAGGAGGTAACTTG
GATAATATACCTGTACAACATTCGCCCAAATGGAGCACTGTATGTATGTA
TGTACGGTCATCACATGTAGCAAGAGTATGGATCAACCGGGTAAGGTTGT
CAATCCTGCTCATGGTTATGTATGGTCATCCATGTAGCAGAGTATGTATT
TCCCTGTTTTCGTTCGCGCCTGAGGATGTGGTCTCGCGAGACGGGTTCGG
CCGTCCCGTCCCGCGTCAGCCTGCTCATCACCATACTCAGGCTGAATCTG
GTAAGGAATTGTTTGACTAGGGAGGCATGCACAGAGGTGACTACTTGTTT
CAAAGTATTCTCCAAGCCTTGGGAGGCACGCAAAATGTTTGCCTTGTAGG
CAGAGAGCTACAGCAGGCACGATGAGGAGATAGCCGGCAGACAAAAAAAC
AGAGTATAGTTAATAAATACCCTGGTAGTAATAAAGTATTACCTATTTAA
TAGTGTAATTTTTTATAAATACTGCTTGTTTAAAAGCAGCGCCCCAGCAA
TGAGTATGAGGGAGACGTCAACCATTTCGGTAGCCCTGGCTGCTTTTAAT
CCCCACGAGAGCCACCGCCACGAGGCAGCAACCGACTCAAGCGCGAGATT
TGTTTTTTTATCGCCCCAGTCCTAGGCAAAGCGTGTGATGTCGAGTGCTT
GGTGGGGAAAGCGCTGCTTCGTGACCAGGCATTCCGAGAGTTGAAGTCAT
TTTTTTTGTTTTTTTTGTCCTGTAGAAATGAATGGAAATTGAGCTCTTCC
AACTCCTCTTACTGTACACCATCACCTTGAATGTACATGTACATGCCAGA
GTACTTTAATCACAGAGAACATTACGAGTACACCTTTACTTCCTACAGCA
TGCCCCTGGTTGCCTTCCATCCCGTCCCGCTCGTGGATACAGTATTAATA
GTATAGCTCTAGTATAGTATAAATTATATGTCAGACATGTAGTGACCCAA
CAGAAACAAAATCAAGCAATGCTCGACTGATGTGCAGGCTAAGCTGTAGA
CAACACAGAGTGTTGGGTGCTCTGGGTTGCAGATGCTGTTGGCAGGATAT
CTACTTTGTATTAATAAATGGCGCAAACGATTGACTCGGTCGGCGCCATA
GCTTCACTACAACACCATTTCAATTTCTGATCACCCACAAAAAAGAAGAA
ACTGTGCCGTCCTGAATAGCGGGCGCCCGGTTGGCAATATCATTTTTCAG
GCTACTCAATTTTTTCAGGCCCATTCAAGAAGATAAGTTGTCGAAATAGG
AGATCGAGGTGAAACGCCGCGTAAGGAAAAATATAAAATTCATGACGATT
TTTTCCCCCGGGGTTTGTACAAATACAATATACTTTTGTACAAATACGGC
TTACAGCTTCCGTGGAGTGAGCTCCAAATACTCTTGTACAAATACAGCAG
TACGAGTATATCATATTTTGGGAAAGCGAATATGTACGGCCATTATATTT
TGGTTGCCTATCCCAACTCGTCCGTTGATCTTCGTACAGCACTCTTGTTG
AGTACTCGTACCACATATGAATGCAATAGCGGATTGGCAGTTAGTACTCG
TGGCTCGATGCGTTTTCCTCTTTAATAGCTTCTTGAAGGCGTCGCCGTCG
CCGTGACTCGCCAGTTGCATGGTATAGATTCGTGATGATGCCCTTTAGGA
GAGTGTTGGGCGCTGTACGGTACAAGCACTACAGCGTTAGCATTACAGGC
TTGACGTGAACAGCATGGTAAGCCATCGTAAGTCATCACAGCCATCGTCG
GAAAGCACTGGCACGTCCGAGCGTGAGCCGGGATGTTTGTTTGGGTGCAG
ACAAGAGGCTTCCGTGGGTGTGGGGGTGAAGGTGGTGCAGAGAGCAGAGA
GCTACGTAGCTGCTTCCTGCCTGTAAAATCGAGATGCGCGTACAGTAGTC
ATCCAAGGCTTCCTAGTTCTACCGCGGTAATTTCTTAGGAGACGATACGA
TTTGTCCACAAATTTCTGTCCCGGGAATCGATCGAGAAAAAAAAACGTTG
TTTTTTGTCGTTTTCATTGCCAATTCCCCATAATCCCATTCGTAAAAGAA
AGCCTCTGTACAACATAAACTCTCATTTTCTCTTCTAGTCAAAGCTTCCG
TGCAAAGTTTTCAAATCCGTCTGTTGTAATTGGCGATTTTTCGAGAAGAC
ATTCGAGCGCTGCAGGGTTGTTCTGATCCGCTCGTATCATATCAATAATG
ACCAGAACCTTGGTAAAGTTTTGAGGTGCTTGTGATAATACTGTAGCAGC
CTTAACATTTTTGAAAACTTTGCGCGACGGCGAGGATAGGGCTCTAGCTG
TTCCACAGTAAATCATGGGTGCCAATCATCTTCCGAAGGTATCAGCGCCA
TGCCTGTAGGTCTATACCCAGGAATCCAACACCGAGCCCGCCGAGCCGGC
AGCATACTCGCGCGAGCTCTCCAAGTTGTGATTGTTATTCGGCTCTTAAC
GGGAGGCAGGGAGGGGCATCCCGCAATCGACCTAATCGTGTCGAAGCTTT
CCCGAGATCGGGATGGAGTGGGCGGAGGCAGATTCCGGTGCCTATGACTA
CCGTGTGTGCATGGGCCATGTTTGGCCTATGAGGCCCGCCAACGTTTTTT
CATTAATGTGAAGAGTACTTGGTTCCGCCGCATTCCCTCCGTGTCCCCTC
TCCCCTCCCCCCTTCGATGCGAGGCATTATTGTTCAAAACCTTTCTTTTT
ATATGTGTTTTTATTTTATTGAAAAGCAATGGCAGAACTGTGCGAATGGA
AGCTTTGACTTAAGTTTTCGGGCAAATGTAATGCTTTTACCTCAACATTT
GCTGCCATGCCTCCCACGGGTTTCCTCGAAAGGCTGACGGCTTTTTGCAA
GCACTTTTTTGCTTCATGTAAAAGTAATGTTAATTGTTTTTCCATTCTCA
CTTGTCCCGACGGGGCTAATCATGGTAATAGATTTTCTAATCCCACCCAT
GACATAAACACCTAGATCTGCCCGATTCACACGTACTAGATACATTTTTT
TGAGCGCGCGTCAAATTTTGGAAATTTTTGCTCTCACGAGTATCGTTCAA
AAAAAAAAGTGGATTGAAACCGCCACCTAACAGCAGCCGAAGGGTGGAAA
ACAAATAAACTGCTTACAGCCCGAAAAAGAAAAATAGAGTTGTAGCCGGG
GGTCCGCCTGTAAATTTTATCACTAAGGACGATACGACCTTGACTTCGTA
TGAATAAGACGCCCACCAATCCTCTTCGTACTCTGTAGCCAATCATGGTC
CCTAGAAAGAAGGGGAAAAAACAGCCACATGTGTACGGCAGTAGTCCCAT
GGAGCTTTGTAAGAGTGCGGGGAACACTTCCGAGCACGTTATTTAGGAAA
AAGTCTGAACGCATCTAAACCTTTTGAGCATCCCCCAGACAGGGGGGGAA
ATTGTCCGAAACGTTTGTTCATAAGCTCCCCCGGCAGCTGCTCCCCAGCA
GCTCGTCGCTTTGATCACTTTACCAGACCAATTCGTGTTCGAGTCAAAGG
CCTTGCATCGGTGCATCAGTGGTGGCTCTACTGTACCGTCGTGTGTAATT
GTACGGCGAAGCGTCCCCGTCACACAAAACCTTTCCCCTCCTGTGTCTCA
AGCAATCCACGTTAAAGCTAAAAAACGAGACTCGCTCGGGGGTTTTGTGG
GGGGGGGTAATGCGCAGGAGCATGCTCAAGAGGGAAAAGCTGAAAATCTC
GAACGACATGGGTGTGGGCACCATGGCTTGGGGGGACGAAAAGGCGGGCT
TCGTGAGCGATCCCAAGCATCGCCCCAGGCGCGGCGAGTTCAACCCCGCC
GATCTTCAGGTGCGGCGCGGGACAGAGGCACGCTTCGTGTGAGGCGTGCT
TACCGCTCGATCGTGTGCCGCTCCTGCTGCTGTTGGCAGATCAGATAGAG
ATCTAGTAACGCCCCTCCGAGCACAGTGCCGCTGCACGTGAGTGTACTTG
CGCTGGCTACCGGTAGCTGTTGATACTGCATGGTTCAGCCCCGATAAGTG
TACTGTATGCTCGATTGCATGGAAGATCTCCGTCCTTTCCCTTCAAATCG
AGATTTTGAAATGCCTCCGCAGGGTTTCCGTATCAAAATGTCGGCCTTGC
TCGTTGGCCACCCCGCACATCGGACAGAGAAATGCTGGCTGTTCTGCGGG
AGATGCGGTATATGAAGAACCCCGAAGGGGATTATCCGTTCTTGTCTCTT
TAGGAAAATTTTTGTTCAACTACTTCGGTGAAGGGATCCCACTATCTAAT
ATTATGTAGGCTACAGCATACATGAGCATCCGCGCTCCCTCCTAACTGCG
ATAACCACCCCTTTACCGAAGCATACCCCCTTGTCTCTTTTCCCTCTATT
TCGAGGATGTTTTGTTCTTCTTAACAGGGAGCATACAACGCTTTGATGAA
CGCGGGGATCACTTTCTTCGACACGTCCGACGTGTACGGTCACAGGTCGG
CCAGGGCTGGCCTGAGCGCGGAGCAACTGCTTGGACGTTTCGCAGAGGAA
AACTCTATGGTGAGACGATACACCAGGCTGTACTATCGAGGAACCTGTTT
AAAGGTCATGAAGAGGTCTTGTATTTGCAGCCTATGAAACAACAATGTTT
TAAACACGTGGTGGGAAATATAAACATGTACTGAATAAGATGAGACGGCA
AAAAGTCCCTCGGGACTTGTTGTAAAACGTAAATGTACTTCTCTTCCACC
AATTATAATATTGTAACGTTCATTGTGTTCTAGACTATAAGCCCTTAGTG
TTATAAGGGTCGATGGCACTACTATCGTATATTATTAGTAACCTATTTAG
TCATGTACATCAATGTTGTTTGTTTTGTCTGGTGTCCCTACTTGGCGATT
AATATAAATGTACAGCATAACGATGGATTTTTCCCCGATATTATACTGTT
GACCCAATGGTACTACCATCGGGGAATTTGTTTCAATGCCATGAAGAGGT
TTTGTATTTGCAGTCTACGATCCCACCTAAACGTTTTGACATTTTGCCCC
TGACTGGGGGATGCTCCGAAGGTCTAGATGCGTTCAGATTTTTCATTAAA
TACACCAGGCTGCTCGTGGCCGGAAATCGCAGCCATCGATTTTTTTCTCA
AGAAAGGCTATGTTTCCTGTAAGGTGCCGAATATTTTTGTCGTGCCGCGC
ACCTTAGCGGAAAATATCGTCGTAGTTCAACCGAATATAAAAATTGGTTG
GTACTTCGGTAGATGTGTATGAATATACTTCGGCGGTATGTCTCGAGAAA
TGTGCAGTTATCAAGATACTGCTTGTGGGTGTAAAAAAATGTGTGTATAT
TACTGTAGATATGCTTGGAAGATGTGGACGAAGATACGTATGAAGATATG
TATGGAGATGCGTATCTTATGAGGATGTGTATGAAGATATCTAATTTCGG
TGTGGAAGATTTACATGAAGATATATGTAGAAAGATCAAACATGCTTAGG
TATGTAGATAAATGTATGCAAGAAGCCGGTCGACCCCGGTAGCTCAGTCG
GCACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAA
CGGGATTTTTCTCACTAAAAACTAAAAAACCAAAATAAAAATGCCCAACG
GGTGGAGAACGATTAATTCGTTAGTACACAAAATTCGACTTCACGGTCGA
CGAGGGAAAgGAATGGCTGAATCCTTCTCGCGACAAAAATCAAGGCACGC
ACCGCAGAAGGAAGGTGGATTAAAAATCCTGTGTGACCTTCCTCCTGTGT
GACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAG
AAAACACACACACAAGACATGTATGGAGATACTGAATGCTTGAAGTGGTT
GAACACACATGATCGTTGAACACGTGTGTGTACTTCATGGTGGCATGTGT
TTTTGAAGCCATGTGTTGAAACTATTCGCACGAGTACCTCCGCACACGAC
ATTTACGCTGAAACTACAGTAACTATCGATATTTTATTTATGGTACAACT
GATGTCGATGTACCAAGTATTTCATTCATGATGTCGATGTACCTTGATGT
ATCTTGCAAGGGTCAACCGGTGATTGCCGCCAAGTACATGCCGATCCTGT
GGACCAAGGTTTTGATCGGGGGCCCTTGGCGAGCGGGCCGACGGGCCGTC
GCGAAGGCGCTTTCTAACACCCTTGAGCGAGGCGGCTGGGGTTACGTGGA
CCTCTATCAGGCAAGTCAGATCGACACCTCAAAAAGAAAGTATATCCTTT
GCATAGTAAGTAGTGTAATCTCACTTCGCTGACGGCGGAAAGCCCACGGG
CTTCCGCGACACGCTTTCCCTGCGACAGTGGTTTGCGTGCCGATCTCGAG
TTATGACTGTTTAGGATGATCGGAAACGCCAAGACGCGTTATAATGAAAC
GCCAAGACGCTTTTCCTGCCCGTGAATCATTTCACACCATGACTCGATTG
CGCGTCATTTGAAGAGCCCTGTACAATCATGAATCAACACAAAGCCATGG
CTTGTCGGTTTGGATGGTAAGTCGAGCCCTTCCGCCACAGAAACCATCGA
AGACGAAAGCGTGGGACTGTCACCAAGTCTGCCCTTCAAACCTGTTTACA
AGTCCTAAAGTGTAGCCATTAATAGTATATAGTAATAGAGCAGATGGAAA
ATTGGTGGCATGTCGGCCAACGTGGGTATGACACAAAGCACTCTGTGTGT
GTTTGTGTGTTTGTGTGGAGTGGGGGGGAGAGACCTTCTGAGTGTTGCTG
CAGTAGCGACGAGCCGTGTTCCATGCACCGAGGTCTCGCGCCGAGGGAGA
TCACTCAGCGCCAGAAGGTCAACCCGGCATGTCCTTCCCCCGTTCTGCAT
TTCGCATTGCCCTTTGCCTCGTCTGCCGGCGTTTCATGTGCTGCATGCAC
AGTTGCATTTTCCTTTCCCGTACGTGGGAGGAATGGAGGCCTTGGCGGAA
GGGCTGGCCGCGGCGTGCGAGCGGGGCATGTGTCGCTCCGTGGGGGTGTC
GAACTTCAACGCGCAGCAGGTGACCAGGGTGATGTGTGTTGGGTTTTTTC
GACGTCCTCACCGAACCGGGTCTTTCAATACCATACGAGCGTTTTAATGG
GCAAGAAGCTGCCTTTCGCATCGAAAAGGAGGCATGTGAGAAAGAATGGA
TCGTGCGGAGCTAGCCACGACGATCATAGCAACACCTCCGCAGTGCAGAA
CTTAACGTAATACCTAATACGCAGGCAGGCGCAATATGTGTACGCTCGTG
CTCATCGATACCGCACATGTACCAGTATGTATGTATGTATGTATGTATGG
TCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCTTG
CTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTCCCCGTGCGTG
CCTGAGAATTTGGTCTCGCGAGATGGGTTCAGCCGTCCCGTCCCGCGTCA
GCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATT
CCTCCCGATTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATC
GGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTC
ACTGCCGAGAGTCCACCGGCACAAGGCCAGTAAACCTCAAGGTAGTTCCG
AACGGGTGCTGCCTTGGCAGATCACCATGGACCAATTAATATTCGCCTCT
CTTTTCCACACCCACTATTGGTATGAAGTGGGCATATTGAAAGTACCGGC
GGTAATAGTATATTAGTATATTAGTATTTTAGTATAATAGTATTTTAGTA
TTTTAGTATATTAGTATTTTAGTATTTTAGTATATTAGTATTTTAGTATA
TTAGTATATTAGCATATTAGTATATAAGTATATTAGTATATTAGTATATT
AGTATTTTAGTATAATAGTATTTTAGTATAATAGTATATTAGTATATTAG
TATATTAGTATATTAGTATATTAGTATATAAGTATATTAGTATATTAGTA
TAGTGGCTCTAGGAAAAGATGTACCTGAATAGGCATCACCCGTTACTCGA
GCGACCTTTAGGACTACTGGCCCTGTGCCGGCGGACTCTCGGCGGTGAAC
GCTATCGGTACGCAATGGCGTGACCTGAGAAAACTCTGGACTGACCCGAT
GGCGATTGACTGTGTAGATGGGACACCGTTATCTATGGAAGAAGAGGAGC
CCGTGAGTAATTTGGAGATTCACCAGAGTGAGCTAATAGCTCACGCGGGA
CGGGACGTTCGAACCTGTCTTGCGATACCAAATTCTCAGGCGCGAACGAG
TACAGGGGAAATTCATTTTCCCTGTTCAGCTGGCTACAAGCGGGATCGAT
GACCATAACTATAGCTGAGGCCCGATCTCATCAACGTGATGACCACTATA
ACGTATACCAGTGCATAACAAGGCATGAAGACGGCTCTGTTGCTACACAG
ATGTGTAACGCCTGCCGCTGGTGCTATGCCGAGCGTAGTTAAACGCTCGT
CTCTTGTAAACGAGGAAACATGCTGGACTCTTTTGAAAAGAAAAAAACGG
GCGCCTATCGTGCGGCAGACCGGCGCGGTTGCGGCAGAATTAAAACCCGC
CGGATCACGAAACAACCTTGGTTGCCTTGCTGCAGGAGTGCTCTCTGGAA
AATCCTCGCGTAGCTCGGAGAGCAGAGCCGAACTCTCACGGCAGTGGCTT
GTCGCGATCACAAGCGGAGATCCTTTTTTGTGAGCCCAAGTCTCCGTTAC
TCTGTCTCAAACCCGGGTCCGAACGTACTCTCGCTCTCTGCTGCTGCTTT
ATCCAAGATGCGCGAGTTTTCGGAAAAGCTGCAAAAACACGGCATCTCCC
TCGCTTCCAACCAGATTGAGTTTTCCCTGGTGAACCAGGACGCGAAGGAG
AACGGAACCCTGGACGAGTGCAGGCGGCTAGGTGCGATAGGAGTCGAAAA
GGTGTTTCTGTATTATAGGTTTCGGAAGATGCGGCATCTGCATGATCGCC
GTGTAACCACCGGTTGAGCTCGCCAAAGCAAAAGGCAAACCACAAACTAT
GTGCGCAGCTGCATGGATTTACTTTACCTCTCACGGAAGAGTGAATGTAA
GATGTCATCAGTCGTGTAAGATTTTTTTAGTAAAGACGATGGCCGGAATT
TTGCTGATGAAGGGCGCGGGGTTTTTTTCAAGTCTGTGCTGTGTCCTCTT
GTAAGCCCTCTTTTGAAGCCTACTGTTTAGCGAAGGGAGAGTGAGTCTAC
AGACACTTGACACCTTTAGAGCTTTCTGGAGCGAATATATCTCTTTATTA
ACCCCCCCCCCAGTCCGCCGAATGACTTTTATACTGTACTTGACACAAGC
ATTTTTATTTCATTTTTTCAGACAGTATAAAATCGAAAAAGAAAAATATA
ACGAAGTAAAAATCTTTATGCAAGTATAATAGTAAGCAAGTAACTGTTGT
CTTTCCTGCATGCAGGTGTCGTGCCTATGGCCCACACGCCATTGGCGAAG
GGCCTAGCGACCGGCGTGTACACAGCCTCAAACCCCACCGGCGGAGCCGC
CGGGCTCCCCAAGTACAACTTCCAGGACCTCATGCCTCTCGCTCCCATAC
ACACGGCTCTCGTCGAGGTGAGAGGTTCAATTCGCAACATTGTGACGCAA
TCGTTTTCCACGTCGAGCTAAGTTCTGGTGCGCCGGAGGAGTACGCCTCC
GTCGGTTGGAACTCCCCACTCCCCCACATGTGTATTCGCTATGTATACTG
TAGCTCTATAGACATCTCGAACGTTTTTGTTTTTAAAGAAAAATCAGAAC
ACACCTAGACATTCTGAGCATCCCCCGGTTATGGGGGGAAAATGTCAAAA
CCTTTAGGTGGGATCAAAGGCTGCAAATACAAAACCTCTTCATGGCATTT
TTTGTTTTTCCTGTCGGATTTTCAATTTATTTGATTTGGCAGTAAGTGTA
AAACCGTCAGTGCCTGAAGCTTAGTGCTCAACCCTTCTGGAGACAACTCT
CCGTTTTCTGGGAACGAATAGTCGGGATGTGTCGCGGGATGTGTATACTG
TAGCAAAAATTACAGCCAAACCGCGTTGTGCCCCCTACTAGAAAATAGTT
TTTTACTTGTGCGGCGATCGGTTTTCGTTCTCCAGAGATGGTTCAGAGTC
TAGCAGCCTTCACGAGAACAATCTTTAGGAGAGCCCCGAAGCTGCTCAGA
CGGCCCTTACGCCAAAGCTCGACTGGCGGGCGTGTTTTTTCGTTGCTTAA
TCATCTAAGTCTAGGCCCGGTCGCATCTTGGATCACGATGGCATGGCACT
GCGCGCGGTCTTTTCACCAAAATCGCGGACGAGGTTTAGAGAACACACTG
TAACCTACTTGTTAGGTGTTTCAACGCTTTCATTACTCGCGTACAAGTTT
TAAAACAAAAGAGGGGTAAGAAAGGATCCCGATGCCACAGAAAATGAATC
GTTCTGTTTTTTCGTGTTTTTTTGTGGGCCATTTTTTTTCATTTTTTTTT
ATGTGTCCTTATCTTCGAGTTTAATGTTTttcTTCTTCTTTTGTATCGTC
GGTATCATCTGCGGTGCGCTTCCTCCTGCGATTTACAGTCATTCCTCGTA
TTCTTTTTTACCGTGAACGTTTCAGGTGGCGAAGAGAGTTGAGGGTCGTC
TGTGGCTAGAGGCGAAGGAGGAACAGAAGAGGGTGTTCCAGGAGATGCAG
GAGGCCGACAATAACGATGACAGTCCTCCGCCGCCCCCGCCGAAGCAGAG
GAGGATCACCACCACGCAGGTTGCACTGAACTACGTCAGGTGTGTTGTGT
GAGTGTGCGGTGATGGAGTGGCCCGTTGCGGTAGATTGTAGTGATGTATA
CGGTCAATGCATGATGCATGAGACGCCGAGAACCATCCCTCGGGAGGGTG
AAACATTTTTTGCGCGGCGATTTACGTGTGTCATTTGCAGATAAGTGTAT
GCCTGTACTTTATTGTACGGTTGGTTCCTTCCGCGCTGCAGCAAACGAGC
TTGAATCCTGCATTTGCTGTAGCGAAGAGGATTCAGTACATAGTAGAAGG
GAGTACACGTTCATCATTTTTTTGTATTCTGTAATTTCAATCGTGTTACT
GGCCTTGAAAAAACACCTTAAATTTTGATGTAAAACAGGAAGCACTTTTT
TTGTGAGTTCTCAATCTTTCCTTTTTGTACGCTTTTTTCGTTTTGATAAA
CACGCTCGGAAAAAGTTGTGGAAACGCCCATCGGTTCCGTGTAAGCTGTT
GTGTACACAGGTCTTATGTACTACAGCGTTGCTCGACCCTGGTGGCCGTT
GTGCGCTAATCTGGTTCTCTATGACGCTACCTATGGCGTTTGCGTTTTTC
TTTCTTTCTTTCTATGACGCTGCCTATGGCGTTTGCGTTTTTCTCTATGA
CGCTGCCTATGGCGTTTGCTTGTACAAAGGGCCAAGGGACTGGTCCCGCT
ACCTGGGGTAAAGACAAAAGCGCACGCGGACGAAGTGGTGGGGTGCTTGG
GTTGGTGGCTCCAGCAGGACGACGTGGGCATCCTGGACGATGCGTACAAC
GTGGGTGGACAGAGCAATCAATCCGTCTATCAATAGAATGGAGCTTGGCG
CTGAAAACAGAAACTTTTGTTCTTGCTCTCGGTGCTCCGTCGCAGTCTGT
CACAATCCCTTGGAAGGAGATGCCGTGTGGTTCATATCCCACGGGCAGCG
CGAGGAAAGACGGGTTTATGTCATAAGAGACACCACGTGATTTCTGTCCG
TACTTTATAATCGGCACTGGAACAAGACAACAAGACTCGTAAACTACTGG
TGATGTGGTGTTTTGCCGGACGCTTCCATGGCCCAGGGTGGATGCTGTTG
CGCAACGGCCTTGACAAAGTTTCGACTCTTGAGTTCCGAGTTTTTTCGCT
GCTCGGCGCATTCCGATTGTTTTTTCTTTTTCTTTATGATTGTGTGTGTG
TGTGTGCgtGTGTGTGCGTGTGTGTGTGTGTGTGTATTTACTAAACTGCA
CATAACCTCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGC
ATTGATCCTCCCAAGGGGGGTGTGTGTGTATGTGTGTGTTTTCTTTCTTC
TTAATGTGTGTCCTTTGTCTATCCTGTCCCGTTATGTCTGGTGTTGTCCT
TTGTCTCCGCTGTCCTCATCCTTCAGGCTTACAAATCCACAACGGGGGGG
AAAACGGTGAAGCGCGGCAGACAGCGTGATCCCATGAAGCGCCAGAACGT
GAAATTCTTGAATCGATCATGGATCCCGAATGATGAATAGTAGGTCAAGT
AGTGATATAATATAGTGATTTTTAGTACTGCCCCAAGAATATTTTATTTT
TCTCTTTATGTGCCGAGAGGAGGGCCGGGCGACCAGGACCATAGAGTGCA
ATCGGAGACGTCTTGTGCCGTACCGTGCAGTACGGTACGCAATTTTTTAG
ACAATCGCTGTTTTATGACTAGAAAAAGCCTTTTCTGGAGCAAGAGATGA
TGTCACCAGGGGGATTGGGGGCCTGGCTCTACTCCAGATCTATACTGGTT
CAGTACATCGCTCTCTACGTTAGCTTTTGCCGTGTCAATCGGAAACACGA
TTCCGTAAAAAACATGTACAGTACTGTACCGTACCAGAGGATACTGAAGA
AGGGATCTCCTGTCCTGGAGTCGTGGGAGTTCCGTGACTCCTCTCGCAAG
GGAAATTGGTTGCCGTGTCAATCGGAAACACGATTCCGTAAAAAAACATG
TACAGTACTGTACAGTACCAGAGGATACTGAAGAAGGGATCTCCTGTCCT
GGAGTCGTGGGAGTTCCGTCACTCCTCTCGCAAGGGAAATTGGTTGCTGT
GTCAATCGGAAACACGATTCAGTAAAAAAACATGTACTGTTGTACCAGAA
GGTGTGTGAAAAAGGTGTCTTTGGTCCTGGAGTCCTGGGAGAAATTGGTT
GCTGTGTCAATCGGAAACACGATTCCGTCAAAAACATGTACTATACCAGG
GTATGTGAAGGAGTCTTGCCTGGAGTACCGGGAGTCGCGTGACTCCTCTC
TCGAGGAAAATTGATTACTCGTAGGTAAAGAATCGGCACTATAATATTAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1052:241248..255947+

>mRNA_A-nodosum_M_contig1052.25.2 ID=mRNA_A-nodosum_M_contig1052.25.2|Name=mRNA_A-nodosum_M_contig1052.25.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:241248..255947+ (Ascophyllum nodosum dioecious)
ATGCCGCCCTCAAAGGTACTAGTGCTGCTGTGCCTGTGGGGACCGATAAC
GACCGGAGCGTTCGTCACGCCTTCAATTCACGCTGCTATAGCTGTGAGGC
GACATAGGACTCCAACATGGAACTCTCGACCCGTACTCCGCATGTCCCCG
GAAAACGGACGACTGGGTGAGGAACATGAGACGCCGCTGGTATTTCCAAG
GAGCATGCTCAAGAGGGAAAAGCTGAAAATCTCGAACGACATGGGTGTGG
GCACCATGGCTTGGGGGGACGAAAAGGCGGGCTTCGTGAGCGATCCCAAG
CATCGCCCCAGGCGCGGCGAGTTCAACCCCGCCGATCTTCAGGGAGCATA
CAACGCTTTGATGAACGCGGGGATCACTTTCTTCGACACGTCCGACGTGT
ACGGTCACAGGTCGGCCAGGGCTGGCCTGAGCGCGGAGCAACTGCTTGGA
CGTTTCGCAGAGGAAAACTCTATGGGTCAACCGGTGATTGCCGCCAAGTA
CATGCCGATCCTGTGGACCAAGGTTTTGATCGGGGGCCCTTGGCGAGCGG
GCCGACGGGCCGTCGCGAAGGCGCTTTCTAACACCCTTGAGCGAGGCGGC
TGGGGTTACGTGGACCTCTATCAGTTGCATTTTCCTTTCCCGTACGTGGG
AGGAATGGAGGCCTTGGCGGAAGGGCTGGCCGCGGCGTGCGAGCGGGGCA
TGTGTCGCTCCGTGGGGGTGTCGAACTTCAACGCGCAGCAGATGCGCGAG
TTTTCGGAAAAGCTGCAAAAACACGGCATCTCCCTCGCTTCCAACCAGAT
TGAGTTTTCCCTGGTGAACCAGGACGCGAAGGAGAACGGAACCCTGGACG
AGTGCAGGCGGCTAGGTGTCGTGCCTATGGCCCACACGCCATTGGCGAAG
GGCCTAGCGACCGGCGTGTACACAGCCTCAAACCCCACCGGCGGAGCCGC
CGGGCTCCCCAAGTACAACTTCCAGGACCTCATGCCTCTCGCTCCCATAC
ACACGGCTCTCGTCGAGGTGGCGAAGAGAGTTGAGGGTCGTCTGTGGCTA
GAGGCGAAGGAGGAACAGAAGAGGGTGTTCCAGGAGATGCAGGAGGCCGA
CAATAACGATGACAGTCCTCCGCCGCCCCCGCCGAAGCAGAGGAGGATCA
CCACCACGCAGGTTGCACTGAACTACGTCAGGGCCAAGGGACTGGTCCCG
CTACCTGGGGTAAAGACAAAAGCGCACGCGGACGAAGTGGTGGGGTGCTT
GGGTTGGTGGCTCCAGCAGGACGACGTGGGCATCCTGGACGATGCGTACA
ACGCTTACAAATCCACAACGGGGGGGAAAACGGTGAAGCGCGGCAGACAG
CGTGATCCCATGAAGCGCCAGAACGTGAAATTCTTGAATCGATCATGGAT
CCCGAATGATGAATAG
back to top