mRNA_A-nodosum_M_contig1052.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1052.18.1
Unique NamemRNA_A-nodosum_M_contig1052.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A6H5KWJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWJ3_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 2.940e-83
Identity = 170/338 (50.30%), Postives = 209/338 (61.83%), Query Frame = 1 
Query:   46 MRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLSSSRETP----------FQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEE----QVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVAS---QAVVTPVPRSHSEG-PGMSTRGVEVNGGR----------------TGHESGFGFLYEGGADDAGALAA--------EIAELFDAVSVALNTADPLQYDQIMEPSIKGL-RPGS---AHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGACCRARPYLP 921
            MRG+TYTIRSSLYVAVTNRC TTSLIASRGPGL MP SFHPL ADVEPS  E+L +VT RLS S              F E+VFAGVGEPLLRWP+V +VV SLRS HA LL+ PRS E ++ +       P G AA T+P++  V      MP+RLVTNGLWPV +   Q V  P P + + G  G +   V+  G R                    +  G     G+ + GA+A+        +IAE+FD+VSVALNTADP QY ++M+PS+ GL   G+   AH  VC  V+ECA+RG+ TECTVV+R  VD+  ARELA  +GA CR RPY+P
Sbjct:    1 MRGITYTIRSSLYVAVTNRCSTTSLIASRGPGLLMPPSFHPLPADVEPSPVEILQDVTERLSGSGGGSGESLRAGGGLFDELVFAGVGEPLLRWPVVRDVVMSLRSRHANLLR-PRSAENSKVDGSGADATPTGGAATTRPSQDVV------MPIRLVTNGLWPVVAVDEQVVGPPSPEADTSGYTGEAKSNVDRQGRRRVGXXXXXXXXXFKVRAASGTSGGIADRSGSAERGAVASPSAASVAKQIAEVFDSVSVALNTADPAQYQELMKPSLDGLVEEGAGPVAHGYVCDLVKECASRGVATECTVVHRHGVDLRRARELAEAMGASCRVRPYVP 331
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: D8LHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH4_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 8.320e-50
Identity = 121/261 (46.36%), Postives = 153/261 (58.62%), Query Frame = 1 
Query:  250 FQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAV---PEESNYMPLRLVTNGLWPVAS---QAVVTPVPRSH-SEGPGMSTRGVEVNGGRTGHESGF----------------GFLYEGGADDAGALAA--------EIAELFDAVSVALNTADPLQYDQIMEPSIKGLR------PGSAHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGACCRARPYLP 921
            F E+VFAGVGEPLLRWP+V +VV SLRS HA LL+ PRS E ++ +     GS+A   P  GA    P + + MP+RLVTNGLWPV +   Q V  P P +  S   G +   V+  G R    SG                 G     G+ + GA+A+        +IAE+FD+VSVALNTADP QY ++M PS  GL       PG AH+ VC  V+ECA+RG+ TECTVV+R  VD+  ARELA  +GA CR RPY+P
Sbjct:   11 FDELVFAGVGEPLLRWPVVRDVVMSLRSRHANLLR-PRSAENSKVD-----GSSADATPTGGAAATRPSQDDAMPIRLVTNGLWPVVAVDEQVVGPPSPEADTSRDIGEAKSNVDRQGRRRMGGSGGVGGGDFKVRAASGTSGGIADRSGSAERGAVASPSAASVARQIAEVFDSVSVALNTADPEQYQELMNPSPDGLLEEEGGGPG-AHSYVCDLVKECASRGVATECTVVDRHGVDLRRARELAEAMGASCRVRPYVP 264
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A835YXM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.990e-34
Identity = 110/312 (35.26%), Postives = 138/312 (44.23%), Query Frame = 1 
Query:   55 VTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLS---SSRETP-------------------FQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAGALAAEIAELFDAVSVALNTADPLQYDQIMEPSIKGLR----PGSAHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGA----CC 900
            +TY ++SSLYV+VTN   T +L ASRGPG  MP  F PL  D EPS  EVL+++T  LS   +S   P                   +QEIVFAG+GEP LRW +V     +LR  H                                       ++PLRL TNG+  +A  A  +PV                                     D   LA E   LF+  ++ALNTAD  QYD IM+P ++G       G+AHA VC FV  CA  G++TECTVV    VDV +A  LA  LGA    CC
Sbjct:    6 ITYALKSSLYVSVTNLSNTITLPASRGPGFKMPAVFKPLPDDFEPSATEVLESLTKELSRQPTSLSCPRFFTNTQSNSPTFSLPAGAYQEIVFAGLGEPTLRWGVVRHAAEALRRSHP--------------------------------------HLPLRLTTNGIGALADAA--SPVL------------------------------------DVDTLALEACALFEGAAIALNTADAAQYDAIMKPRLRGGSGGGGSGTAHARVCRFVEACAEGGMKTECTVVEAPGVDVAAAMALARVLGAGQQSCC 241
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A7S4CR33_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CR33_9EUGL)

HSP 1 Score: 134 bits (338), Expect = 8.590e-34
Identity = 101/290 (34.83%), Postives = 130/290 (44.83%), Query Frame = 1 
Query:   46 MRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLSSSRETPFQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAGALAAEIAELFDAVSVALNTADPLQYDQIMEPSIKGLRPGSAHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGACCRARPY 915
            ++G+ YT+RSSLYVA+TN   T +L+ SRG G  M +SF PL A  EP+  +VL+ V    +  RE PF+ IVFAG GEP LR P++ EV R+L+                                A+GA       M LRL TNGL  +  Q  + P                                             E+    DAVSVALNTADP QY ++M P   G     A   V  FV+ C A GL+ ECT V R  VD+ + R LA  L A  R+R +
Sbjct:    4 VKGIVYTVRSSLYVALTNHSNTLTLLDSRGSGFKMNSSFEPLPAGFEPTASQVLEAVEAACNE-REPPFESIVFAGKGEPTLRLPVMLEVARALK--------------------------------AKGA-------MTLRLNTNGLCNLHHQRDIVP---------------------------------------------ELQGSIDAVSVALNTADPRQYHELMTPECSGREALDA---VAQFVQRCVAAGLKVECTAVERPGVDLDAVRALAESLKASFRSRTF 205
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A4D9DFL6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFL6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.390e-27
Identity = 104/330 (31.52%), Postives = 137/330 (41.52%), Query Frame = 1 
Query:   37 EGNMRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLSSSRET---PFQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAGALAAEIAELFDAVSVALNTADPLQYDQIMEPSIKGLRPGSAHAI--------------------------------VCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGACCRARPYLP 921
            EG M  +TY I+ +LYVAVTNRC T  L A+RGPG SM   F PL    EPS  E++ ++TG L++S       + E+ FAG GEP LRWP V  +   LR                 EE V  RG              E   + LRL TNGL  V  +                                              ++  ++AE F++V+VA+NTAD  QYD +M P +     G A A+                                V +FV+EC   G+ T+ T V R DVDV + R +A  +GA  R RPY P
Sbjct:   73 EGPM--LTYWIKDTLYVAVTNRCNTVPLHATRGPGFSMG-DFSPLPPSYEPSEDELMASITGALAASHSLLNRAWTEVCFAGWGEPTLRWPTVLALAERLRH----------------EESVGKRG--------------EGGRLRLRLSTNGLGNVVQRK---------------------------------------------SIVRDVAEAFESVTVAVNTADASQYDSLMRPDLSMC--GDAEAMQPYTFSCTDQGGTEXXXXXXXXXXXXXETLGEVLAFVKECVGSGIDTQITAVARPDVDVEAVRSMAKGVGATFRERPYFP 322
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: I2CPP1_NANGC (Radical sam domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPP1_NANGC)

HSP 1 Score: 90.9 bits (224), Expect = 4.710e-17
Identity = 77/239 (32.22%), Postives = 102/239 (42.68%), Query Frame = 1 
Query:   37 EGNMRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLSSSRET---PFQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAGALAAEIAELFDAVSVALNTADPLQYDQIMEPSI 744
            EG M  +TY I+ +LYVAVTNRC T  L  +RGPG SM   F PL    EPS  E++ ++TG L++S       + E+ FAG GEP LRWP V  +   LR                 EE V  RG              E   + LRL TNGL  V  +                                              ++  ++AE F++V+VA+NTAD  QYD +M P +
Sbjct:  104 EGPM--LTYWIKDTLYVAVTNRCNTVPLHVTRGPGFSMG-DFSPLPPSYEPSEDELMASITGALAASHSLLNRAWTEVCFAGWGEPTLRWPTVLALAERLRH----------------EESVGKRG--------------EGGRLRLRLSTNGLGNVVQRK---------------------------------------------SIVRDVAEAFESVTVAVNTADASQYDSLMRPDL 264
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: W7UCC3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCC3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:   37 EGNMRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSVGEVLDNVTGRLSSSRET---PFQEIVFAGVGEPLLRWP 300
            EG M  +TY I+ +LYVAVTNRC T  L  +RGPG SM   F PL    EPS  E++ ++TG L++S       + E+ FAG GEP LRWP
Sbjct:   91 EGPM--LTYWIKDTLYVAVTNRCNTVPLHVTRGPGFSMG-DFSPLPPSYEPSEDELMASITGALAASHSLLNRAWTEVCFAGWGEPTLRWP 178
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: C1N6B4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N6B4_MICPC)

HSP 1 Score: 75.1 bits (183), Expect = 9.410e-12
Identity = 81/302 (26.82%), Postives = 122/302 (40.40%), Query Frame = 1 
Query:   49 RGVTYTIRSSLYVAVTNRCCTTSLIASRGPG--LSMPTSFHPLSAD--VEPSVGEVLDNVTGRLSSSRETPFQE----IVFAGVGEPLLRWPIVGEVVRSLRSHHAQLLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWPVASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAGALAAEIAELFDAVSVALNTADPLQYDQI--MEPSIKGLRPGSAHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGAC-CRARPYLP 921
            +GV YT+   LY+A+T+R  + +++ASRGPG  +S  ++F PL      EPS  E+   V             E    + FAG+GEPLLR   + E + ++R                                      E  + +P R++T+GL+     A +           G++T  V++                  A D  A AA +           +  +PL    I  +  S   +     H +VC+F+   A RG+  ECTVVN   V+  +AR LA  LGA   RAR Y P
Sbjct:   11 KGVAYTVGRGLYLALTDRTNSRTVVASRGPGFVMSRESNFSPLGGQGAAEPSATELAAVVDRAYDGLDIVGMGENDPGVTFAGLGEPLLRMETIVETIATVR--------------------------------------ERRHGVPFRVMTSGLFSPDVAAALAEA--------GVNTATVDLV-----------------AQDPSAYAAVMRRHRH------SPPNPLSNGGIGGVYTSSANMIREDGHGVVCAFIATLAERGVEVECTVVNEPGVETAAARALAFDLGAVRFRAREYFP 243
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A8J2SM46_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM46_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.500e-11
Identity = 49/116 (42.24%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:   49 RGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTS--FHPLSAD--VEPSVGEVLDNV---------------TGRLSSSRETPFQEIVFAGVGEPLLRWPIVGEVVRSLRSHH 339
            RGV Y + S LYV +TNR    SL+ASRGP   MP S  F PL A+  V+  V  VLD                 T R       P   + FAG+G+PLLRWP V E+ R +R HH
Sbjct:    9 RGVVYWLGSQLYVQLTNRARGLSLVASRGPAFQMPASSGFAPLEAEPTVDAVVAAVLDAYANDERKKALGQDVGRTRRADGGATDP--GVAFAGLGDPLLRWPDVAEITRRVREHH 122
[Close]
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Match: A0A7S0SPP3_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SPP3_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.870e-8
Identity = 38/79 (48.10%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  682 VSVALNTADPLQYDQIMEPSIKGLRPGSAHAIVCSFVRECAARGLRTECTVVNRDDVDVTSARELATKLGAC-CRARPY 915
            V+VAL TADP QY+ +M+P          HA VC FV      G+  ECTVV    VDVT+AR+LA  LGA   RAR +
Sbjct:  207 VTVALATADPRQYEALMQPEAGS----GGHAAVCGFVVNLVEAGVEVECTVVKAPGVDVTAARQLAEALGAVEFRAREF 281
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1052.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KWJ3_9PHAE2.940e-8350.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH4_ECTSI8.320e-5046.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXM5_9STRA3.990e-3435.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4CR33_9EUGL8.590e-3434.83Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4D9DFL6_9STRA1.390e-2731.52Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CPP1_NANGC4.710e-1732.22Radical sam domain protein (Fragment) n=1 Tax=Nann... [more]
W7UCC3_9STRA1.060e-1249.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
C1N6B4_MICPC9.410e-1226.82Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A8J2SM46_9STRA2.500e-1142.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0SPP3_9CHLO2.870e-848.10Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1052contigA-nodosum_M_contig1052:133148..139869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog38833.XP_003063503.1
PFAMsRadical_SAM
Model size1237
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons5
Evalue2.02e-13
EggNOG OGsCOG0535@1|root,2SGDK@2759|Eukaryota
Descriptionpyrroloquinoline quinone biosynthetic process
Cds size879
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1052.18.1prot_A-nodosum_M_contig1052.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1052 133193..139556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866430.6617928-UTR-A-nodosum_M_contig1052:133147..1331921680866430.6617928-UTR-A-nodosum_M_contig1052:133147..133192Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 133148..133192 +
1680866430.7321942-UTR-A-nodosum_M_contig1052:139556..1398691680866430.7321942-UTR-A-nodosum_M_contig1052:139556..139869Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 139557..139869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866430.6776829-CDS-A-nodosum_M_contig1052:133192..1332271680866430.6776829-CDS-A-nodosum_M_contig1052:133192..133227Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 133193..133227 +
1680866430.685918-CDS-A-nodosum_M_contig1052:137675..1378341680866430.685918-CDS-A-nodosum_M_contig1052:137675..137834Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 137676..137834 +
1680866430.6993196-CDS-A-nodosum_M_contig1052:138265..1383381680866430.6993196-CDS-A-nodosum_M_contig1052:138265..138338Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 138266..138338 +
1680866430.711224-CDS-A-nodosum_M_contig1052:138522..1389361680866430.711224-CDS-A-nodosum_M_contig1052:138522..138936Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 138523..138936 +
1680866430.7224827-CDS-A-nodosum_M_contig1052:139358..1395561680866430.7224827-CDS-A-nodosum_M_contig1052:139358..139556Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 139359..139556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1052.18.1

>prot_A-nodosum_M_contig1052.18.1 ID=prot_A-nodosum_M_contig1052.18.1|Name=mRNA_A-nodosum_M_contig1052.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=293bp
MRGVTYTIRSSLYVAVTNRCCTTSLIASRGPGLSMPTSFHPLSADVEPSV
GEVLDNVTGRLSSSRETPFQEIVFAGVGEPLLRWPIVGEVVRSLRSHHAQ
LLQLPRSTEIAEEEQVQPRGSAACTKPAEGAVPEESNYMPLRLVTNGLWP
VASQAVVTPVPRSHSEGPGMSTRGVEVNGGRTGHESGFGFLYEGGADDAG
ALAAEIAELFDAVSVALNTADPLQYDQIMEPSIKGLRPGSAHAIVCSFVR
ECAARGLRTECTVVNRDDVDVTSARELATKLGACCRARPYLP*
back to top

mRNA from alignment at A-nodosum_M_contig1052:133148..139869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1052.18.1 ID=mRNA_A-nodosum_M_contig1052.18.1|Name=mRNA_A-nodosum_M_contig1052.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6722bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:133148..139869+ (Ascophyllum nodosum dioecious)
AGAGCACTCTTACCTTTTGGGCCTTCGTCAGTCAGGGAGGGAAACATGAG
GGGAGTGACATACACCATCCGCTCGTCCCTGTGAGTCTACCCTTTTTTTA
GTGACCGTCTCAAACCCAAAGTCCAGAAACGCAAGCATACGGCTGCTACT
CGCGTGCAACTGATACACGCAGCACTATCCATACAATCACAACACGTCTC
GTTAGGTGTTAGTGTCTGGCATCCTAAACGTGTAATAGATCGACGCTGTA
AGACGCTGGTGCTACGTACGGTACACGGACTTTACTTCACAACAGAAAAT
TATTTGGTACTGGTAGTTGACAGTCCCGTGCCCAGTTCGTTAGCCAACAG
CTACAGTACTTGGAAAGGGCTATTAATAGTATTTTCTTGTACATAGCTGG
AGCCATGACACCACACAGGGCTCACGAAAGATTGTATAGTCATCACTTAT
AGCCGAGTATGGATCAACCGGGTCAGGTTGCCACCCTGCTCGTGGTCAGT
TGAACAGAGAACATGAATATTTCCCTGTCCCCGTTCGCGCCTCAGAAATC
GGTCTCGCGAGACAGGTTCGACCGTCCCGTCCCGCATTACCCCGCCGGTA
CTTTCATCATGCCCGCTTCATACCATTAGTGGGTGTGGGAAAGAGAGGCG
AATATTAATTGGTCCACGGTGATCTGCCAAGGCAGCACCCGTTCGGAACT
ACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCC
ATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCG
TATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCGGGCGGAATCCCG
TAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCG
GGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGCAC
GGGGACAGGGGAATGTTAATTTTCCCTGTTCAGCTGACCACGAGCAGGAT
TGGCGACCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATAC
ATACGTCGCATGGTTTGATGGGGGGGGCGAGATTTTTGGGTTTGGAGCGG
GAGGTTACAAGGAGAGTTGGTCATGGTGCTCCCTGTTTGTCGAATATCCG
TCTCTATTTGTTGCGACAAGCGGCGAGAAACCAGCTTTACGGTTCCGGCC
GAGAGCGGTCGTAGCGGGGAGAGGAGTCGTAGCTGTGTGCACGCGCATTT
CTAGCCAAGAATATGTTTACGATAAGTAACCCCCAGGTGGGTAATATGCA
GTAGCATAGAATGAGTAGATTACAGGGCCGAATTGCGCGGTTATGTGCAA
TTTGATAAATATACATACATACCCTGCTCATTCTCCTCACTCAGCCTGAA
TCTGGTGCTTGGACCAACCGCTATGTTGCCACTAAAATACAAAAAAGAAA
CACAAAAAAATGTTCATTTCCGCGGCAAATATTTCTGTATTTTCTTTTTT
GAATGTGCCCCGCTATGGGCTGAGCGAATGAACGAAAAAAATAATACAAA
AATAAGACGAAGGTCCGTGGAATACTAGCCAACCAAGTCTCTAGCCCCCT
AGTTTGAAATTTGAAATTTGAAAATGAGGCCCACCGTGGGCACATCTCGT
CCTCAGAGGCAGGTTTTGTACAGCGCTTAGAAAGGCATGAAAAGTTCCGT
AGGTCTGTGTGTTTTTTTTGTGGCCACCTACGGAAATGAGGCTCATTTCC
GTGGGTGGCCACaaAAAAAACACAGACCTACAAGAAAAAAATGGAACATT
TCCGTTTTTTTGCTCCCATAGCGTGCTTCCCACAAAAATGACCTACGGAA
ATTTGTTCATTTTTGTTTTCTTGGAGTCCCATAGCGGTTGGCCAATACAA
AAATGAAACACAAAATTTGTTCATTTCCGCGGCGATTAGTTCTGTATTTT
CTTTTTTCTATGTGCCCCGTTATGGGCTGGGCGAGTGAACAGAAAAAATA
ATATAAAAGTATCGAGGTCTTGGCAGACCCCTTAGACTGACTTTCCAGGC
TCGATTGTTGCACAACCAACAGAGTGCCAATTCAATGCCGAAAAGGGCGG
TTTTTGAAAGATCTCGTCGAGAGCTTTCTTTAGACGAATCGGTCGGTGTT
CACATCCTCTTGGTTGTGGAGCAATCGAGCCTGGAAAGTCAGTCTAGGGG
GTGTGCCAAGACTGTTAATAATACCGATATACTAACGGTACTGGTCATGC
AAGTCTCTAGCCCCCTAGTTTGTAATTTGAAAGTGAGGCCCACCTTGGGC
ACATCAATTTGAAAACGAGGCCCACCGTGGGCACATCTCGTCCTCATAGT
TGCTGATATTTGGCCCACCTTGGGCACATCTCGTCCGGTTTTATATAGTG
CTTCGAAAGGCGTGAACAGTTCCGTAGGTCTGTGTTTTTTTTGTGGCCAC
CTACAAAAATGACCTACAAAAAAAAAATTAGATTATTTGCGTTTTTTTTT
GCTCCCATAGCGTGCTTCCTGAAAAAACGACCTACAAAAATTTCTTCATT
TTTGTTTTTTTTTAGTCCCATAGCGGTTGGCCTTAGCGTGCTTCCCACAA
AAATGACCTACGGAAATTTATTCATTTTTGTCTTTTTGGAGTTCCATAGC
GGTTGGCCTTACTCGTGGAATTCCTCCCGCTTTCCGCGGCCGCATCCAAT
TACTTATACCGCCAACCGCCATCGGGCCAGTCCCGAGTTTATCGTGTCAC
GCAGTTGCGTACCGATGGCGTTCACTGCCGAGAGTTCACGGGTACAGTGC
CAGTAGTACTGTACTCAAGATAGTTCCAGTCACGGGTGCTGCCTTTTCAA
TTACAGTATCACCATGGGCCAAATAACGTGCGCCTCTCTTTTCCCACATC
GACTATACTAACATTGGTATGAAGTAATATTAATAGTAGAAATGTGTGAT
ACAGAAAATGTCTGAGGCTTCGTGCGGATTCCCGTTACGCAAACCTCAAC
GTGACCTCGATCGGGATGTGAAGATACGGGAAGATACGCAGCGCGCGCTT
ACATCCGAAGAAGTTTATAGTGTATCTAGCATTGGGCGACGCGTGGACTG
GATTGGAGGCAACATCCGGCGCAAGTTATCCTCTCGGATATCATTCAATT
GTCCGAGCCAGACTCTTTCCAATTAGAGCTAAGCATACCTACCTGTTCCA
TTTCCCCTCGCCACCCCGTGCCTCCGCGCTGCCCCTGCTGCTCCTCATCT
TCGCCACTCTCTACCTCATAACTGTAGTCGTTCAGTGGCGTCAATCGTTG
CAGTCACCGACCGGGTGTTGCCGCGCAGCTATAAATAGCCAGCTGAAGGT
GCCTGAGCTCGCTACTGTAAGTGTCGTTACTGTAACGCCCTTATCTCTCA
AATAGCACCTTTCTTTCAAATAGCACCGATGGGAACAGTCAACTTGCGAG
GTACGGAGTACAAACCGCTCGAAATTGCGTCGCCACGCTCTCTGTTGGAG
TTCTTTCAGGTGACAACTGGCTGGCAGAACGCGTTATCGATATATTTTGG
AAGCCATCGAGTGAGAGAGTTAAGACCACAGAAACATTTCAAGCGATCAC
AAGCAAATGATTATCGCTACTTGTATCTCTGCGGGGAGGCCATTCGAGGT
CGACGTTGGGAAAACCTCCTTGGTTGAGAGGCTACCTTGCCGATTCTATT
GCCTCTCTTGTATGCCATTGTAGAGCTCGAGTGTTGATCATCCTACCTCG
AGATGAGAGCCCTCCTAAGCTTCGAGATCAACCAGACCAACACAACAGAG
TAGTCGGTTGTTGGCCCTCGGTTTGAAGTTCCTGCTTGAAACTCCCTCCT
CCGCAACAATAGAAGACGTCCTCGAGAACGAGGACGTTCCCCTGCTGAAC
GACCCCGGGCGTAGCTTGCAGTAACCACTGGTGACGCTTGTATCACTCGC
AACGCAAGGAATGGTGACGCTGCACGCACGCCCGAGACCGATCCCGCCGT
TTGAGAAGCGTGGCTCGGCCCTCGCTTTTAGGGGAGCGCTCGAAAAGTCG
CTGCTGCCCTTGCATTTCCAGCGTGTAAATTCGAAGTGATGCACGGCCTG
TCGAGCTTAGTCACTCTTGGCTAGTATTGCGGTCGTGTCGTGGGTCACTT
TCTTTAAAAATGCTGAGGTCAGCGGTACGCAGAAATAACTTCCCCTACGG
AATAATATATACCCCGGCATGGTGCTTTGGAAATGAAAAAATCAGGCCAC
GAACGTCTCGGCTTACATGGTCAAATATACCCTCCCCCCACCCTTGGTTG
CGTAGAAAACCAGAAGAAGTGTTCGTGCTTTGGTGTAGGAGGCAGGCGTT
CCACTCCATCGCCCCTAACGATCACGCACCACGCTCTTGAAAAAATGTTG
TCGTAAGTTTTCCACTAACTGCGTTATCGGTAACAACCCGCCGGCGTACA
GGATTTTAGGAGCGAGTGACGACCCTCGGTCCTTCCGGTTGCCCATTGCT
GCTGCACTAATATACCCCCTCCCGCCAGATACGTTGCGGTGACCAATCGC
TGCTGCACGACGAGCTTGATAGCCTCGCGAGGTCCTGGACTCTCCATGCC
GACGTCATTTCACCCACTCTCGGCCGATGTCGAGCCTTCGGTTGGGGAGG
TCCTTGACAACGTGACCGGTAGACTCTCCAGCAGCCGGTGAGAACATACT
TATACGTGTGTTGCGCATACTCGGGTATAGCATATTGACGAATAAGCGGC
GGCGCGGTCAAAAAGATTTCGAGATTATGAACGGTAATCTCGCCCCACAA
AGAATGGGCCAAGGAAAAAACGCGTCAAGGGATCAATCTGAAATGAATTT
AAGACCTTTTTTGCGCGACACGTATCTGCTTGCTCAGATTTCGCTATGTC
ATTCATTGTGCAGATATGCTGAGTGAACGAATCAGCACAAGAACTATTAC
AATGAAGAGATTCCCATCCGCTAACGCCCAACAGGGGGTGGGTGTCCCAG
GTTTTGTTGATCCTACGTGTCGTTTGTTATCAGCAAACTTTCGCTCTTGC
CGAATATTGCGTTCGCCAGCGCTTTACTTTATGTCATCCCTCCGGATCGC
TGCTTGCCGTTGACAAAGCGAGACTCCGTTCCAAGAGATCGTTTTCGCCG
GGGTTGGTGAGCCCCTGCTGCGATGGCCCATCGTTGGAGAGGTGAGCACG
TCGAACGCCGCCATCCTGTGCCCCCCTTTGAGGATTCAATTTCCCTCTGC
CTTGTCGGAAATCTCGTTTCTTTTATGCTCTTTTGGGTGTTGGGCGCTCG
GCATGGCATCATAAAGCGCAGGATGTTCGGTGACGCCAGAGCGCGCACCG
TGCGCTGAATACCTGCGCCCGCCAGGTGGTGCGTTCTCTGCGGTCTCACC
ATGCTCAGCTTCTCCAACTACCAAGGTCGACGGAAATTGCCGAGGAAGAG
CAGGTACAACCTCGTGGAAGCGCAGCCTGTACGAAGCCTGCGGAAGGGGC
GGTGCCCGAAGAATCTAACTACATGCCACTACGCCTAGTCACCAACGGCC
TTTGGCCGGTGGCTTCCCAAGCTGTCGTCACTCCTGTGCCCCGATCTCAC
AGCGAAGGGCCGGGCATGAGCACCCGCGGCGTTGAAGTAAACGGTGGCCG
CACAGGACATGAATCTGGCTTTGGTTTCCTCTACGAAGGGGGTGCGGACG
ATGCCGGCGCTCTTGCGGCAGAGATAGCCGAGCTGTTCGACGCCGTTTCG
GTTGCGCTCAACACAGCAGATCCGCTTCAGTACGATCAGGTGCGAAATGG
TGCATTTTGAGTTTCGTCTTTCGGTAGCCGCGCGACGAAATGATCGCGCC
GAGTAGCGCTGGGCACCTTTTTGGCCATTCAATCAGATGTTTCGTTCTTT
GGTCAAATCGTCCCACCTGTAAGCCGCGAGTAGTCCGCAAGTCGTGGCCG
CCCACGCACTTTTGTAGGAAGAACATGCTCCTGTCCATCTATCCGAACCA
CCAGCCTTGAAGCGGATTTTGTAGCCCGTTTGCTCCACTATGCCCGAGCA
CCTCCCTTCTCCCTTCTATACTTTGCCGGTTCTGATTTCGGTTCTGTGTC
ATGGCTAAGCACTTTCGCTTGGTGGACCTTGTCCCTAACATACAAAACCT
TGAGGCGGTTTTACCTATAAATATTCCCCCGGATGTGCCTTATTTTTGTG
TGTATCGACAGATTATGGAGCCTTCCATCAAGGGACTCCGGCCAGGAAGC
GCTCACGCGATCGTGTGCAGCTTCGTTCGGGAGTGTGCAGCCCGCGGGCT
GCGGACAGAGTGCACGGTTGTCAACCGTGACGACGTCGATGTGACTAGCG
CCCGGGAGTTGGCTACAAAACTTGGGGCATGTTGTCGAGCGCGCCCCTAT
CTTCCGTAGTTGGACTCCTTAACGTTTGTTGTTAAGTTGAAACTGTTCTG
GTCAGAAATCGCCGTTTCTGAGCACTTGTAGGAAAACTCTCTGGCTCGAA
AGCTGAGAGCATCATGAGAACCGTTTCACAACCTCACCAGCCCCCTGCGG
TCCAAAGACGTCTCTCCAATTGAGACACGGATAAATAGTGACGGGACTCT
TGCGGCAGGATAACTGCTAACAGCGGAGCTAGTAGTAAGCTCCAAAAACA
CCGTACTACCATAAGACGCTCTCAGGAAGGAGACAAACATTTTGCACACA
TTATTACATACAAATATGTGCA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1052:133148..139869+

>mRNA_A-nodosum_M_contig1052.18.1 ID=mRNA_A-nodosum_M_contig1052.18.1|Name=mRNA_A-nodosum_M_contig1052.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=879bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:133148..139869+ (Ascophyllum nodosum dioecious)
ATGAGGGGAGTGACATACACCATCCGCTCGTCCCTATACGTTGCGGTGAC
CAATCGCTGCTGCACGACGAGCTTGATAGCCTCGCGAGGTCCTGGACTCT
CCATGCCGACGTCATTTCACCCACTCTCGGCCGATGTCGAGCCTTCGGTT
GGGGAGGTCCTTGACAACGTGACCGGTAGACTCTCCAGCAGCCGCGAGAC
TCCGTTCCAAGAGATCGTTTTCGCCGGGGTTGGTGAGCCCCTGCTGCGAT
GGCCCATCGTTGGAGAGGTGGTGCGTTCTCTGCGGTCTCACCATGCTCAG
CTTCTCCAACTACCAAGGTCGACGGAAATTGCCGAGGAAGAGCAGGTACA
ACCTCGTGGAAGCGCAGCCTGTACGAAGCCTGCGGAAGGGGCGGTGCCCG
AAGAATCTAACTACATGCCACTACGCCTAGTCACCAACGGCCTTTGGCCG
GTGGCTTCCCAAGCTGTCGTCACTCCTGTGCCCCGATCTCACAGCGAAGG
GCCGGGCATGAGCACCCGCGGCGTTGAAGTAAACGGTGGCCGCACAGGAC
ATGAATCTGGCTTTGGTTTCCTCTACGAAGGGGGTGCGGACGATGCCGGC
GCTCTTGCGGCAGAGATAGCCGAGCTGTTCGACGCCGTTTCGGTTGCGCT
CAACACAGCAGATCCGCTTCAGTACGATCAGATTATGGAGCCTTCCATCA
AGGGACTCCGGCCAGGAAGCGCTCACGCGATCGTGTGCAGCTTCGTTCGG
GAGTGTGCAGCCCGCGGGCTGCGGACAGAGTGCACGGTTGTCAACCGTGA
CGACGTCGATGTGACTAGCGCCCGGGAGTTGGCTACAAAACTTGGGGCAT
GTTGTCGAGCGCGCCCCTATCTTCCGTAG
back to top