mRNA_A-nodosum_M_contig10509.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10509.1.1
Unique NamemRNA_A-nodosum_M_contig10509.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 107 bits (268), Expect = 7.610e-26
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 GTGTVCQINNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGELGG 183
            GTGTVCQI NG+TDLA MFHKSLPHD LGQV A DFAILEDCILNGDFSICE VP G+  G
Sbjct:  159 GTGTVCQITNGETDLATMFHKSLPHDELGQVTADDFAILEDCILNGDFSICEDVPAGDPAG 219
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 103 bits (258), Expect = 1.520e-24
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 GTGTVCQINNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGE 174
            GTGTVCQINNG+TDLAA FHKSLPHD LGQVDA  FA LEDCILNGD SICE VP+G 
Sbjct:   36 GTGTVCQINNGETDLAAKFHKSLPHDDLGQVDADAFAALEDCILNGDLSICEDVPVGN 93
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.040e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   22 INNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGELG 180
            +NNGD   AA FHKSLPHD+LGQVD+A F  L +CI  GDF ICE VP G++G
Sbjct:  102 VNNGDRSSAATFHKSLPHDSLGQVDSAAFEALTECIAQGDFDICELVPAGDVG 154
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.180e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 GTVCQINNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGELG 180
            GT+  +NNGD   AA FHKSLPHD+LGQV++ DF +L +CI  GDF  CE VP G+ G
Sbjct:   98 GTL-HLNNGDRSSAATFHKSLPHDSLGQVNSEDFDLLMECIAQGDFDTCELVPAGDDG 154
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.070e-13
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 GTGTVCQINNGDTD----LAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGELGG 183
            G G  C I NGD +     A  +HKSLPHD  GQVDAAD+  L DC+   D ++C+ VP G  GG
Sbjct:   69 GVGPTCHITNGDEEDVPLFAGQYHKSLPHDKFGQVDAADYQKLLDCVFTSDINVCDKVPSGAAGG 133
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BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 62.4 bits (150), Expect = 7.340e-10
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   13 VCQINNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSICEGVPLGELGG 183
            V   N GD   AA FHKSLPHD LGQV + DF  L +C+ +GDF  C+ VP G + G
Sbjct:   92 VFHENLGDFSSAATFHKSLPHDELGQVFSFDFEELIECVASGDFDTCQEVPAGNVEG 148
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10509.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
O82433_FUCDI7.610e-2681.97Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.520e-2482.76Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE7.040e-1564.15Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE2.180e-1358.62Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
B7ZGM1_9PHAE4.070e-1349.23Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0A3G3BM28_SACJA7.340e-1052.63Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10509contigA-nodosum_M_contig10509:13260..14160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866429.036712-CDS-A-nodosum_M_contig10509:13259..133491680866429.036712-CDS-A-nodosum_M_contig10509:13259..13349Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10509 13260..13349 +
1680866429.0470026-CDS-A-nodosum_M_contig10509:14066..141591680866429.0470026-CDS-A-nodosum_M_contig10509:14066..14159Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10509 14067..14159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10509.1.1prot_A-nodosum_M_contig10509.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10509 13260..14159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10509.1.1

>prot_A-nodosum_M_contig10509.1.1 ID=prot_A-nodosum_M_contig10509.1.1|Name=mRNA_A-nodosum_M_contig10509.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
GTGTVCQINNGDTDLAAMFHKSLPHDALGQVDAADFAILEDCILNGDFSI
CEGVPLGELGG
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mRNA from alignment at A-nodosum_M_contig10509:13260..14160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10509.1.1 ID=mRNA_A-nodosum_M_contig10509.1.1|Name=mRNA_A-nodosum_M_contig10509.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at A-nodosum_M_contig10509:13260..14160+ (Ascophyllum nodosum dioecious)
GGGACAGGGACTGTCTGCCAAATCAATAACGGAGATACTGACTTGGCTGC
CATGTTCCACAAGTCTCTGCCACACGATGCTCTCGGACAGGTATTTTGTA
AATCATACGCGCCCCCCGCAAGCCATTTTGGTGGTGTAAAGCGATGGAAA
CAAGTCCTGCCGAGTAGATTGCTTGTCAACCAGAAAACAAAACCCCACTA
GTTTGAGTTGTATTTGTTCCTTGAATGCCTAGCGACAACGTACAAGGAGA
GCTGCAGTATGTTACGATTCTGCCAAATACCATTGAAAAAAGTTACTTGA
TAGCGCAAGTTGTAGACTTAACACAGACGTATGTCTATACAGGACGGTTT
CGAAAGTTCACTATAAATAGTGGAGGGAAGCTATAGCACAGAGGATGAGA
TCCGCTTGTAAAAGAAGGCAATGAAGATGGGACGATAGGTATTCCTCTCC
ATCGGAGAAACAGCACTACACAGTACACTACTATTATTAGTTGCAGGGAG
CCATGACGTGCCACAAGACGGCCACACAGCAGCTCTTCTCTCAGCCACAG
TACTTTTGCATGATTTGGGGATACCACAATCATAGCGTCGAATGGACTAA
TAAGGTAAATCCAAAATGCATGTACTCTGCATTACCAAATATCATAACAT
ACGGTTATTAACAGTTCCTAATGCATGACGCAGGGGATCTCATACTCAAA
AGTACTTAGAAATGACGGAGAAACCCCAGAAAAGGGAGTATGCTATCTTT
CGTTGTACAACTATAATGCATTGCCTTCCAAGAAACCATCTCACGCACGC
CTTGCAGGTAGACGCAGCTGACTTTGCTATCCTCGAGGACTGCATCTTAA
ATGGAGATTTCAGCATTTGCGAGGGCGTGCCTCTGGGGGAACTCGGAGGG
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10509:13260..14160+

>mRNA_A-nodosum_M_contig10509.1.1 ID=mRNA_A-nodosum_M_contig10509.1.1|Name=mRNA_A-nodosum_M_contig10509.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig10509:13260..14160+ (Ascophyllum nodosum dioecious)
GGGACAGGGACTGTCTGCCAAATCAATAACGGAGATACTGACTTGGCTGC
CATGTTCCACAAGTCTCTGCCACACGATGCTCTCGGACAGGTAGACGCAG
CTGACTTTGCTATCCTCGAGGACTGCATCTTAAATGGAGATTTCAGCATT
TGCGAGGGCGTGCCTCTGGGGGAACTCGGAGGG
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