mRNA_A-nodosum_M_contig10502.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10502.3.1
Unique NamemRNA_A-nodosum_M_contig10502.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10502.3.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.030e-11
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 AQTCPAYYATWD---DSPTGHVAHEVSSYLKRSDPRETLLRSFIDKEGGAPAPAKLNVFRVIDAATPGAIVKVIPGVSVV 231
            A++CPAYYA  +   D  + H  HE+SSYL+R+D RETL+ +F D   G PAP +L V   I A+ PG  V V PGVSV+
Sbjct: 1041 AESCPAYYACCEQGKDKSSTH--HEISSYLQRTDNRETLIGAFNDGVPGYPAPVRLVVTGRIAASNPGVAVYVEPGVSVI 1118
[Close]
BLAST of mRNA_A-nodosum_M_contig10502.3.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.350e-10
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 AQTCPAYYATWD---DSPTGHVAHEVSSYLKRSDPRETLLRSFIDKEGGAPAPAKLNVFRVIDAATPGAIVKVIPGVSVV 231
            A++CPAYYA  +   D  + H  HE+SSYL+R+D RETL+ +F D   G  AP +L V   I A+ PG  V V PGVSV+
Sbjct:  540 AESCPAYYACCEQGKDKSSAH--HEISSYLQRTDNRETLIGAFNDGVPGYHAPVRLVVTGRIAASNPGVAVCVDPGVSVI 617
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10502.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE3.030e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI3.350e-1048.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10502contigA-nodosum_M_contig10502:6992..7448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size458
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866428.9961429-CDS-A-nodosum_M_contig10502:6991..74411680866428.9961429-CDS-A-nodosum_M_contig10502:6991..7441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10502 6992..7441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866429.005042-UTR-A-nodosum_M_contig10502:7441..74481680866429.005042-UTR-A-nodosum_M_contig10502:7441..7448Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10502 7442..7448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10502.3.1prot_A-nodosum_M_contig10502.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10502 6992..7441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10502.3.1

>prot_A-nodosum_M_contig10502.3.1 ID=prot_A-nodosum_M_contig10502.3.1|Name=mRNA_A-nodosum_M_contig10502.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=150bp
AQTCPAYYATWDDSPTGHVAHEVSSYLKRSDPRETLLRSFIDKEGGAPAP
AKLNVFRVIDAATPGAIVKVIPGVSVVRLGWYHDASAGGSEVGSQASSNA
AKSATTIAWRKKTTTNISEEELSVLLLFWWVGVIRLLVFVQDTDDVARG*
back to top

mRNA from alignment at A-nodosum_M_contig10502:6992..7448+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10502.3.1 ID=mRNA_A-nodosum_M_contig10502.3.1|Name=mRNA_A-nodosum_M_contig10502.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=457bp|location=Sequence derived from alignment at A-nodosum_M_contig10502:6992..7448+ (Ascophyllum nodosum dioecious)
GCGCAGACATGCCCCGCATACTACGCCACGTGGGACGACTCGCCCACAGG
ACATGTGGCGCATGAAGTCTCCAGCTATCTGAAGAGGAGCGACCCGCGCG
AGACGCTGTTAAGATCCTTCATCGACAAAGAAGGGGGAGCGCCAGCACCG
GCAAAATTAAATGTCTTCAGAGTGATCGACGCTGCGACTCCGGGTGCTAT
TGTCAAGGTCATTCCTGGTGTGAGCGTCGTCCGTCTAGGGTGGTACCATG
ACGCCTCTGCTGGAGGGTCGGAGGTAGGATCACAAGCTTCTTCTAATGCC
GCGAAGAGTGCTACTACTATAGCGTGGCGCAAGAAGACCACAACTAATAT
AAGTGAAGAAGAGTTATCCGTCTTGCTTCTTTTTTGGTGGGTGGGTGTCA
TTCGCTTACTAGTTTTCGTTCAAGATACAGATGATGTAGCGAGAGGGTGA
AGGCATA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10502:6992..7448+

>mRNA_A-nodosum_M_contig10502.3.1 ID=mRNA_A-nodosum_M_contig10502.3.1|Name=mRNA_A-nodosum_M_contig10502.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at A-nodosum_M_contig10502:6992..7448+ (Ascophyllum nodosum dioecious)
GCGCAGACATGCCCCGCATACTACGCCACGTGGGACGACTCGCCCACAGG
ACATGTGGCGCATGAAGTCTCCAGCTATCTGAAGAGGAGCGACCCGCGCG
AGACGCTGTTAAGATCCTTCATCGACAAAGAAGGGGGAGCGCCAGCACCG
GCAAAATTAAATGTCTTCAGAGTGATCGACGCTGCGACTCCGGGTGCTAT
TGTCAAGGTCATTCCTGGTGTGAGCGTCGTCCGTCTAGGGTGGTACCATG
ACGCCTCTGCTGGAGGGTCGGAGGTAGGATCACAAGCTTCTTCTAATGCC
GCGAAGAGTGCTACTACTATAGCGTGGCGCAAGAAGACCACAACTAATAT
AAGTGAAGAAGAGTTATCCGTCTTGCTTCTTTTTTGGTGGGTGGGTGTCA
TTCGCTTACTAGTTTTCGTTCAAGATACAGATGATGTAGCGAGAGGGTGA
back to top