mRNA_A-nodosum_M_contig105.62.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.62.1
Unique NamemRNA_A-nodosum_M_contig105.62.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:654106..654544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size439
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.2606275-UTR-A-nodosum_M_contig105:654105..6541111680866425.2606275-UTR-A-nodosum_M_contig105:654105..654111Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 654106..654111 -
1680866425.2790895-UTR-A-nodosum_M_contig105:654507..6545441680866425.2790895-UTR-A-nodosum_M_contig105:654507..654544Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 654508..654544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.2703986-CDS-A-nodosum_M_contig105:654111..6545071680866425.2703986-CDS-A-nodosum_M_contig105:654111..654507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 654112..654507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.62.1prot_A-nodosum_M_contig105.62.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 654112..654507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.62.1

>prot_A-nodosum_M_contig105.62.1 ID=prot_A-nodosum_M_contig105.62.1|Name=mRNA_A-nodosum_M_contig105.62.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MSGGASSSGVSNPVGLEISNATVIDVEKFPMLEALPCFLEERCRDTEDNN
EPRPRQVAFGGSGFSVRVEYPLVGRKASALHGLRVGRGRHGNEQVPFPGY
RFTGSGLSMRRVSLQLLCSWLSRNDSTGTTR*
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mRNA from alignment at A-nodosum_M_contig105:654106..654544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.62.1 ID=mRNA_A-nodosum_M_contig105.62.1|Name=mRNA_A-nodosum_M_contig105.62.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at A-nodosum_M_contig105:654106..654544- (Ascophyllum nodosum dioecious)
ATTTCGGGTTGAGTAAGCAACTGTCGTCGGCACAGACATGTCTGGTGGCG
CCTCCTCCAGCGGTGTCAGCAATCCTGTGGGGTTGGAAATCTCCAACGCC
ACAGTGATAGACGTGGAAAAATTTCCCATGCTAGAAGCTCTACCCTGTTT
CTTAGAGGAAAGGTGCCGGGACACCGAAGACAATAATGAACCTCGCCCGC
GTCAGGTTGCCTTCGGGGGAAGCGGTTTCAGCGTTCGCGTCGAATATCCA
CTTGTTGGGAGGAAAGCTTCAGCCCTTCATGGACTTCGCGTTGGGCGAGG
GCGCCACGGTAACGAACAGGTTCCGTTTCCGGGATATAGGTTTACAGGTA
GCGGGCTCTCAATGAGACGCGTCTCCCTACAACTGCTGTGTAGCTGGCTG
TCGAGAAATGACTCGACTGGCACTACTCGCTAACTCCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:654106..654544-

>mRNA_A-nodosum_M_contig105.62.1 ID=mRNA_A-nodosum_M_contig105.62.1|Name=mRNA_A-nodosum_M_contig105.62.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig105:654106..654544- (Ascophyllum nodosum dioecious)
ATGTCTGGTGGCGCCTCCTCCAGCGGTGTCAGCAATCCTGTGGGGTTGGA
AATCTCCAACGCCACAGTGATAGACGTGGAAAAATTTCCCATGCTAGAAG
CTCTACCCTGTTTCTTAGAGGAAAGGTGCCGGGACACCGAAGACAATAAT
GAACCTCGCCCGCGTCAGGTTGCCTTCGGGGGAAGCGGTTTCAGCGTTCG
CGTCGAATATCCACTTGTTGGGAGGAAAGCTTCAGCCCTTCATGGACTTC
GCGTTGGGCGAGGGCGCCACGGTAACGAACAGGTTCCGTTTCCGGGATAT
AGGTTTACAGGTAGCGGGCTCTCAATGAGACGCGTCTCCCTACAACTGCT
GTGTAGCTGGCTGTCGAGAAATGACTCGACTGGCACTACTCGCTAA
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