mRNA_A-nodosum_M_contig105.57.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.57.1
Unique NamemRNA_A-nodosum_M_contig105.57.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:627265..627864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.2103293-UTR-A-nodosum_M_contig105:627264..6272891680866425.2103293-UTR-A-nodosum_M_contig105:627264..627289Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 627265..627289 -
1680866425.2287924-UTR-A-nodosum_M_contig105:627727..6278641680866425.2287924-UTR-A-nodosum_M_contig105:627727..627864Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 627728..627864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.2198608-CDS-A-nodosum_M_contig105:627289..6277271680866425.2198608-CDS-A-nodosum_M_contig105:627289..627727Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 627290..627727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.57.1prot_A-nodosum_M_contig105.57.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 627290..627727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.57.1

>prot_A-nodosum_M_contig105.57.1 ID=prot_A-nodosum_M_contig105.57.1|Name=mRNA_A-nodosum_M_contig105.57.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=146bp
MLGIAVVALRQGARNVGRYECPVGHFREVLLAMEGRANANGLAEEILLLR
TIRSRGDRILQNADFNHLLTMAVVRNRLLLPGAGIAPEITKGDEDRRSRP
LRGTPYALSGREPRVPHHRMSQLGLETTSRQEGFRGSSRFGGMCY*
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mRNA from alignment at A-nodosum_M_contig105:627265..627864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.57.1 ID=mRNA_A-nodosum_M_contig105.57.1|Name=mRNA_A-nodosum_M_contig105.57.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig105:627265..627864- (Ascophyllum nodosum dioecious)
CACCGCACGATCTGAAAAATTGATAAGGGGACGCTGACCCGTGTAACTGT
GCCCTCACTCATATTCCCGTCTTGTTTGCCAGTCGGTGTGCCTGCTCGAC
CGTGGTACGCGGCGTGGGGTAATTGGGGGGGCCGGTGATGCTCGGGATAG
CTGTTGTTGCTCTGCGACAAGGCGCACGAAATGTTGGCCGATACGAGTGC
CCTGTTGGTCATTTTCGCGAGGTTCTTCTGGCCATGGAAGGCAGGGCGAA
CGCAAATGGGCTGGCAGAGGAAATCTTGCTTTTACGTACGATTCGCTCCA
GGGGTGACCGTATCCTGCAGAATGCAGACTTCAATCACTTGCTCACGATG
GCGGTGGTCCGTAACCGCTTGCTGCTGCCCGGGGCAGGGATCGCCCCCGA
GATCACAAAAGGGGATGAAGACCGGCGCTCGAGGCCGCTTCGTGGGACTC
CATACGCTTTGAGTGGGAGGGAGCCGCGTGTACCGCACCATAGGATGTCC
CAGTTAGGGTTGGAGACGACTTCGCGCCAGGAGGGCTTTCGCGGGAGTTC
CCGTTTTGGAGGGATGTGTTATTGACCGACTACCCGGACCGTACCACCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:627265..627864-

>mRNA_A-nodosum_M_contig105.57.1 ID=mRNA_A-nodosum_M_contig105.57.1|Name=mRNA_A-nodosum_M_contig105.57.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig105:627265..627864- (Ascophyllum nodosum dioecious)
ATGCTCGGGATAGCTGTTGTTGCTCTGCGACAAGGCGCACGAAATGTTGG
CCGATACGAGTGCCCTGTTGGTCATTTTCGCGAGGTTCTTCTGGCCATGG
AAGGCAGGGCGAACGCAAATGGGCTGGCAGAGGAAATCTTGCTTTTACGT
ACGATTCGCTCCAGGGGTGACCGTATCCTGCAGAATGCAGACTTCAATCA
CTTGCTCACGATGGCGGTGGTCCGTAACCGCTTGCTGCTGCCCGGGGCAG
GGATCGCCCCCGAGATCACAAAAGGGGATGAAGACCGGCGCTCGAGGCCG
CTTCGTGGGACTCCATACGCTTTGAGTGGGAGGGAGCCGCGTGTACCGCA
CCATAGGATGTCCCAGTTAGGGTTGGAGACGACTTCGCGCCAGGAGGGCT
TTCGCGGGAGTTCCCGTTTTGGAGGGATGTGTTATTGA
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