mRNA_A-nodosum_M_contig105.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.11.1
Unique NamemRNA_A-nodosum_M_contig105.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig105.11.1 vs. uniprot
Match: D7FQ74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 3.950e-49
Identity = 103/193 (53.37%), Postives = 109/193 (56.48%), Query Frame = 1 
Query:  256 FELPFGMSQRQPFLEKKKAAKRLSGELFDMLTEEDAQPDDAVVMAKIEELEGAPGVVFNTDNLFDGRPWRVLWKTNTAWQRFFDPSNDLADNRAYQKYEKDGSVTNIAQAFGHKLYVTVDGQGAPVSASTKLPYEVKVEVSRGWLHAFGVKVPLDFIKGTGTTIVVYSDARLRVFRSDTGGVVVQTKAQEVVP 834
            FE  FG  Q+           RLS ELFD LT E A+PDD  VM KIEELE                                                 DGSVTNIAQA G KLYVTVDGQG+P S  T LPYEV VEVSR WLHA G K+PLDFIKG GTT VVY+DARLR+FRSDTGGVVVQTKA EVVP
Sbjct:   59 FESLFG-GQKTKEQNNSGETARLSEELFDFLTAEGAKPDDVAVMEKIEELE-------------------------------------------------DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVP 201
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ74_ECTSI3.950e-4953.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:61810..65802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1080
Hectar predicted targeting categorysignal peptide
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007180.1
Cds size777
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.11.1prot_A-nodosum_M_contig105.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 62050..63967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.428578-UTR-A-nodosum_M_contig105:61809..620491680866425.428578-UTR-A-nodosum_M_contig105:61809..62049Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 61810..62049 -
1680866425.4948196-UTR-A-nodosum_M_contig105:63967..640061680866425.4948196-UTR-A-nodosum_M_contig105:63967..64006Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 63968..64006 -
1680866425.508951-UTR-A-nodosum_M_contig105:65778..658021680866425.508951-UTR-A-nodosum_M_contig105:65778..65802Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 65779..65802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.4375925-CDS-A-nodosum_M_contig105:62049..621601680866425.4375925-CDS-A-nodosum_M_contig105:62049..62160Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 62050..62160 -
1680866425.447354-CDS-A-nodosum_M_contig105:62397..624661680866425.447354-CDS-A-nodosum_M_contig105:62397..62466Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 62398..62466 -
1680866425.4555206-CDS-A-nodosum_M_contig105:62861..629661680866425.4555206-CDS-A-nodosum_M_contig105:62861..62966Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 62862..62966 -
1680866425.4633412-CDS-A-nodosum_M_contig105:63131..632781680866425.4633412-CDS-A-nodosum_M_contig105:63131..63278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 63132..63278 -
1680866425.474977-CDS-A-nodosum_M_contig105:63442..635651680866425.474977-CDS-A-nodosum_M_contig105:63442..63565Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 63443..63565 -
1680866425.4850135-CDS-A-nodosum_M_contig105:63745..639671680866425.4850135-CDS-A-nodosum_M_contig105:63745..63967Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 63746..63967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.11.1

>prot_A-nodosum_M_contig105.11.1 ID=prot_A-nodosum_M_contig105.11.1|Name=mRNA_A-nodosum_M_contig105.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=259bp
MTVHAAALTTRSGCAYILFLTLLCSGVLVDALMTAPALDWGGRGAVGTRN
LGLRSTVSMGLPLPFELPFGMSQRQPFLEKKKAAKRLSGELFDMLTEEDA
QPDDAVVMAKIEELEGAPGVVFNTDNLFDGRPWRVLWKTNTAWQRFFDPS
NDLADNRAYQKYEKDGSVTNIAQAFGHKLYVTVDGQGAPVSASTKLPYEV
KVEVSRGWLHAFGVKVPLDFIKGTGTTIVVYSDARLRVFRSDTGGVVVQT
KAQEVVPT*
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mRNA from alignment at A-nodosum_M_contig105:61810..65802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.11.1 ID=mRNA_A-nodosum_M_contig105.11.1|Name=mRNA_A-nodosum_M_contig105.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3993bp|location=Sequence derived from alignment at A-nodosum_M_contig105:61810..65802- (Ascophyllum nodosum dioecious)
CTGCGGTCCTGGTGGCTCTGGCATGTAAGATTTCATGGATGTACATTGGC
GTTGAACCTGTCCGTCATTGCCTTGTCAGTAGTTTGTCTATGATTATGAT
TATATCTTGAATACCGTCTGTAGCATGATGAAGTATTTCATGCAACACAT
GACACATGCAAATGAAAAACGCAACCCGCGGCACCAATCCAAGTACTAAA
AACTGTACTATACCATCCCCTCCACAGGGACACATGATCAAAACGCTTGT
CTTTATTGTACTCTGGATTTTTGGTACGAAATACAGTACCTGGTACTACA
GTACAGCACGAACTATATGATAGCTCTATTACAGTAATGCTCTTCGTCTA
CTTCCAGGCGAATAACGGGGTCGTGTACTTGGATTATGAAGATTCTCATC
ATCATGGTCCTCTGCTGTCTTTATTGTTTGATGATGTATTGGTTTGTCTT
CCCTTTTGTTGGTGTCCCTGCATGGCGATTAAAGTAAGTGTACAGTATGT
ATGACGGTGGGCTTCTCCCCGACATTATACTGTTGACCCAATGTTATTAC
CATCGGGGAACCCGTTTAAATGCCATGAAGAGGTTTTGTATTTTCAGCTA
TTGATCCCACCTAAACGTTTTGACATTTTTTCCCCCAGACTGGGGGATGC
TCAGAAGGTCTAGGTGCATTCAGATTTTTTTTTTGTAAATACACCTAAAC
GTTTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTG
CGTTCTGATTTTTCTTTAAATACATTAATACATTCGTCTAAGATTTGTGG
GGATGTCGAGTAATGTAATGTAATTCGAGCCAGGTTCAGGTTTATCGAAG
ATTAGGTCTGCAACTCTAGTAGAGTAAGCAGTAATCAATAAACGTGTCTT
GCTCCTTTGTTGGTGAAAAGGAGGCCATTTTTTTTTAACAGCTTACCAAC
CGTGGTACAGCATGGAATTTAGCTCACAGGATGTTGTTGGTGGGGTACGT
AACGAGAGTGGAAGTCAAGGGATATCACACGCGAACAACATGTTTTCAGA
GAAAGATGAGATCGAAGGCATTGAAATATCCGGTGGAGTTTGGTAGGATT
CTCGTGTCAGCGTTGTTAAAAAGTACAATACTGCTATTTTGTCCACCGGT
GGGGTACTTCTTTATTTACCCCACCACCTGGATCTCGCGTCAGAAGACTC
GGTTGGTCACAGTACATGCATGAGTGTATTGACGCGTCGCAGGACTATCA
TGGGGTCTATCGTGCAGCCCAAACGGTCCTGTCTAGGTCTGTCTAGGTGC
TGCCACGTGTTGGTCACAGTACATGCAGGCGCGTCGCAGGGCTATGTGTT
GGGGATTCCGCTGTACCCCACCGGCCGTAGCAGCACCTAGACAGGGCCGT
TTGGGTTAGGATTAGAGTTAGGGTTATGGTTAGGGTTAGGGTTAGCACAC
TCATGCACGTACTGTGACCAACCGAGTCTTCTGACGCGAGATCCAGGTGG
TGGGGTAAATGAGGAAATACCCCACCGGTGGGCTAAACAGCCACACCGTA
AAAAGTACCGTATAATAAGTAATTTTTGTTTCGATGGCATGCAGTATTGT
GCACCATTTTGAAGAAAACGAACGCTCATACGCGACCTGCGGAAGAACAT
CGTCGCTGCCGTTCAGACTGAAGTCAGCAGGAAGCCAACTTCTCTATAGT
TCTCAAGCACGTTTACAGTCACATGTGCTTGGGAAGCCCTCATAAATGAT
GTCCGTACTCTCTTTACGACACCTCGGATTGCGTTCGTGTACACAGCAAA
CTCCCTCTGCTTTTGGAAGGAATAACGTGCGGGAGATGACAGTTCACGCG
GCTGCTTTGACCACGAGAAGTGGCTGTGCGTACATCCTATTCCTGACGCT
CCTGTGCTCTGGAGTCTTGGTGGATGCCTTGATGACTGCGCCCGCACTCG
ATTGGGGAGGCCGAGGAGCTGTTGGAACGAGAAACTTAGGTTTACGATCT
ACGGTATCGATGGGATTACCTCTTCCGTTTGAACTTCCCTTCGGAATGAG
CCAAAGGGTGAGTTTCTCTCGTGTTTTGACATCGAAATCCACCTAATGTC
GATATCTGAATTGCGACTTAAACAACGAGGATACAGTACAGACTATCAAT
AGACTGGCTTTTTGCCAATCTATCCGTCATTATAAGTATGCCCGTACCGT
ATGTCCACGTTTCACGTTTCGTCTTCTCTATTAATAGCAGCCATTTCTAG
AAAAAAAGAAGGCGGCGAAACGACTGAGCGGGGAGCTATTCGACATGTTA
ACGGAGGAAGATGCGCAGCCGGATGACGCGGTAGTGATGGCAAAGATCGA
GGAGCTCGAGGTAACTCGTAAGGTTCACCCCGTACCAGGGCCTGTCTTCT
AGGTTTAGGCTCACATCACCCCCCCTATGATCCCTACGCTATCGTCATGC
CTCGCCACGGATTATCTCTGCTCATCCAAAGCCCCGAGAGCTTACTAGCT
TAAGTCCTGTAACACGTGAAGCAGGGCGCGCCGGGGGTTGTCTTCAACAC
GGACAATCTTTTCGACGGCCGACCGTGGCGAGTCCTCTGGAAGACCAACA
CGGCGTGGCAGCGTTTTTTTGACCCATCCAACGACCTGGCGGACAATAGA
GCATACCAGAAGTATGAGAAGGTAATGAGAAGGTGCAGCGCGCTGTGTTG
CTGTGCCGATAGATACTGGTCACGCGTGTAGAACTGCTTCCATTCACGCC
GATGGATTCTTTCGGCGACGCAGCGTTATCTAAAAGGCTGGCTCGACTCT
CTTGCGTCGGCACCATGCGCTTCTTTGCGCGAGCAGGACGGTTCCGTCAC
GAACATTGCTCAGGCGTTCGGACACAAACTGTACGTGACTGTGGATGGGC
AGGGGGCACCAGTATCCGCGAGTACCAAATTGCCATACGAGGTGAGTGTG
TGTATGGGTCTGAAGTTACGCCGATTTTCGAGCTAGACAGTGCCATCGTG
ACAGGTTCTCCCATTGTTTTCGTCCTCCGTGGTTCATTTTGCTATTGTAG
AGCTCTTGCGTGTACGATGATGCGTACAAGTTCGTGCGTGGATGAGCCGT
TTATGCGTGCCTTCGAACATCGCGTGGTTCTAATTAGAGGTGTCGATGAG
TCAACTGCCGTGGAGCTGTGTCCCTCGTACCGTTCCTGTCGAGGCTGCAA
TCCTACATGCCCTGGGCGTTCCGGTTCTTGATCTTGAGATACTAGCAAAG
CTTCACCTGTGGAATAAGATGTCAAATCCGCCGTTGTTGACGCTGATGTG
ATGAAATCGTCCATTATCGTGACCTCGTCGTGGCAGGTCAAAGTGGAAGT
GTCTCGCGGGTGGCTACACGCGTTCGGGGTGAAGGTGCCCCTTGACTTCA
TCAAGGTTCGTCAGTTTCAATGAGTAGCAGCCCCGCCAAGAAGCAGCCGT
CACGGTGATCTTGCGCATATGTTGTCACCCTCCTTGTGTTAAGCAGTCGA
CTCTGTTCATGCTACAGAGTAGTCCTGCGGTGAGTTGTCTTCGATGCGTC
GTTACCGTGGCTACTTATACTGGATGTGTGTATGAGGTGACCTCCGCGGA
AATGTGCACGCTGTGCGTTTCACCTCCGTGCTTCGCTTTCAGGGAACGGG
TACTACAATCGTTGTATACAGCGACGCCAGGCTCAGGGTGTTTCGGTCCG
ATACCGGTGGAGTGGTGGTTCAGACTAAGGCCCAAGAAGTGGTGCCCACG
TGACTTTTCGACCATCAGCTGAGCAACAAATGAAGCCCCCAGGGATGAGA
AACGCCAACCTCGCCCTTGGGCAGGTATTCTAGTAAAACTTCCACACCGC
GGACCATACGATGCCTCAGCGCATTACGCTGCATTTCGTTTCGTTACGTA
ATACTGGTACAAGGTCGACCGAATCCCGGCGGTGGTATGAAATCGCTTGG
GCCGTACAATTGGTTACTGAAGGCAAGTTCTTGGAGATACTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:61810..65802-

>mRNA_A-nodosum_M_contig105.11.1 ID=mRNA_A-nodosum_M_contig105.11.1|Name=mRNA_A-nodosum_M_contig105.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=777bp|location=Sequence derived from alignment at A-nodosum_M_contig105:61810..65802- (Ascophyllum nodosum dioecious)
ATGACAGTTCACGCGGCTGCTTTGACCACGAGAAGTGGCTGTGCGTACAT
CCTATTCCTGACGCTCCTGTGCTCTGGAGTCTTGGTGGATGCCTTGATGA
CTGCGCCCGCACTCGATTGGGGAGGCCGAGGAGCTGTTGGAACGAGAAAC
TTAGGTTTACGATCTACGGTATCGATGGGATTACCTCTTCCGTTTGAACT
TCCCTTCGGAATGAGCCAAAGGCAGCCATTTCTAGAAAAAAAGAAGGCGG
CGAAACGACTGAGCGGGGAGCTATTCGACATGTTAACGGAGGAAGATGCG
CAGCCGGATGACGCGGTAGTGATGGCAAAGATCGAGGAGCTCGAGGGCGC
GCCGGGGGTTGTCTTCAACACGGACAATCTTTTCGACGGCCGACCGTGGC
GAGTCCTCTGGAAGACCAACACGGCGTGGCAGCGTTTTTTTGACCCATCC
AACGACCTGGCGGACAATAGAGCATACCAGAAGTATGAGAAGGACGGTTC
CGTCACGAACATTGCTCAGGCGTTCGGACACAAACTGTACGTGACTGTGG
ATGGGCAGGGGGCACCAGTATCCGCGAGTACCAAATTGCCATACGAGGTC
AAAGTGGAAGTGTCTCGCGGGTGGCTACACGCGTTCGGGGTGAAGGTGCC
CCTTGACTTCATCAAGGGAACGGGTACTACAATCGTTGTATACAGCGACG
CCAGGCTCAGGGTGTTTCGGTCCGATACCGGTGGAGTGGTGGTTCAGACT
AAGGCCCAAGAAGTGGTGCCCACGTGA
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