mRNA_A-nodosum_M_contig1049.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1049.8.1
Unique NamemRNA_A-nodosum_M_contig1049.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: D8LB17_ECTSI (PINc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB17_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 8.350e-134
Identity = 190/200 (95.00%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            MGKAKKSRAVRVKFA+ KRLLSPKDCRLKGN EKEEAKRKK KEAETNHVKQVPT+MFFAHNTALGPPYHVL+DTNFINFSIKNKLDIVKAMMDCLLAKAIPC+T+CVVAELEKLGPKYRVALRLSKDPRFQRLPCSH GTYADDCLVQRAEQHRCYIVATCDK+LKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
Sbjct:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 200
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A836CF02_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF02_9STRA)

HSP 1 Score: 322 bits (825), Expect = 2.760e-109
Identity = 157/200 (78.50%), Postives = 180/200 (90.00%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            MG+AKK RAV+VKFA++KRL+SPKD RLK   +K E K  K KE ET  V Q P++MFF +NTALGPPYHV+VDTNFINFSIKNKLD+VK+MMDCLLAKA PCIT+CV+AELEKLGPKYR+ALRL+KD RFQRLPCSH+GTYADDC++QRAEQHRCYIVATCDK+LKRRIRKI GVPIMYISNRK++IERM EAFGAPP+
Sbjct:    1 MGRAKKQRAVKVKFAQSKRLISPKDPRLKEVAKKAEEKAAKAKEKETRQVTQTPSAMFFKYNTALGPPYHVIVDTNFINFSIKNKLDMVKSMMDCLLAKATPCITDCVIAELEKLGPKYRIALRLAKDERFQRLPCSHKGTYADDCILQRAEQHRCYIVATCDKELKRRIRKIAGVPIMYISNRKYTIERMPEAFGAPPS 200
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A397JSP6_9GLOM (PINc domain-containing protein n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397JSP6_9GLOM)

HSP 1 Score: 295 bits (754), Expect = 3.250e-98
Identity = 140/198 (70.71%), Postives = 176/198 (88.89%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAK++R    KFA+ KRLL+PKD RLK   EK++ K ++ +++E  +V QV +S+FF +NTALGPPYHVLVDTNFINFSI+NKL++V+AMMDCL AK+IPCIT+CV+AELEKLGPKYR+ALR+++DPRF+RLPC+H+GTYADDCLVQR  QH+CYIVATCD+DLKRRIRKIPG+PIMYIS RK++IER+ EA+GAP
Sbjct:   24 MGKAKRTR----KFAEAKRLLNPKDSRLKSVQEKQKTKEEQKRKSEVRNVPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVQAMMDCLYAKSIPCITDCVMAELEKLGPKYRIALRIARDPRFERLPCTHKGTYADDCLVQRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRKYTIERLPEAYGAP 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A812Y1D1_SYMMI (FCF1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1D1_SYMMI)

HSP 1 Score: 287 bits (735), Expect = 1.270e-95
Identity = 142/203 (69.95%), Postives = 169/203 (83.25%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAE---TNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            M K KK+R + VK     +++S KD R+K N EK+ A  +K  +A+   + HV Q PT++FF HNT LGPPYHVLVDTNFINF+IKNKL+I K+MMDCLLAK IPCIT+CV+AELEKLG KYR+ALRL+KDPRF+RLPCSH GTYADDCL+ R +QHRCYIVATCDKDLKRRIRK+PGVPIMYI++RKFS+ERM EAFGAP T
Sbjct:    1 MTKQKKTRKIAVK-----KIISGKDPRIKANQEKQAADAQKALKAQKEASRHVTQAPTALFFTHNTQLGPPYHVLVDTNFINFAIKNKLEIYKSMMDCLLAKCIPCITDCVMAELEKLGTKYRLALRLAKDPRFERLPCSHPGTYADDCLLHRCQQHRCYIVATCDKDLKRRIRKVPGVPIMYINSRKFSVERMPEAFGAPKT 198
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A1Y1ZF27_9FUNG (Fcf1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZF27_9FUNG)

HSP 1 Score: 285 bits (730), Expect = 6.800e-95
Identity = 136/198 (68.69%), Postives = 170/198 (85.86%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    +F   KR+L+PKD RLK N EK + K ++ +++   H+ QV +S+FF +NTALGPPYHVLVDTNFINFSI+NKL++VK+MMDCL AK IPCIT+CV+AELEKLGPKYRVALR+++DPRF+RLPC+H+GTYADDCLV R  QH+CYIVATCD+DLKRRIRKIPG+PIMYI+  K++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----QFGLVKRMLNPKDARLKENQEKLKKKEEEKEKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPCITDCVMAELEKLGPKYRVALRVARDPRFERLPCAHKGTYADDCLVNRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYIAQHKYTIERLPEAYGAP 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A397WAQ8_9GLOM (Fcf1-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397WAQ8_9GLOM)

HSP 1 Score: 284 bits (726), Expect = 2.670e-94
Identity = 136/196 (69.39%), Postives = 169/196 (86.22%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFG 588
            MGKAKK+R    +FA+ KRLL+PKD RLK   EK++ K ++ ++    +V QV +S+FF HN ALGPPYH+LVDTNFINFSI+NKL++V+AMMDCL AK IPCIT+CV+AELEKLGPKYR+ALR+++DPRF+RLPCSH+GTYADDCLV+R  QH+CYIVATCDKDLKRRIRKIPG+PIMYIS RK++IER+ E +G
Sbjct:    1 MGKAKKTR----RFAEVKRLLNPKDSRLKSVQEKQKKKNEEKEKETIRNVPQVASSLFFRHNAALGPPYHILVDTNFINFSIQNKLELVQAMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCSHKGTYADDCLVKRVMQHKCYIVATCDKDLKRRIRKIPGIPIMYISKRKYTIERLPENYG 192
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: UPI0009E60673 (rRNA-processing protein FCF1 homolog n=2 Tax=Scleractinia TaxID=6125 RepID=UPI0009E60673)

HSP 1 Score: 282 bits (721), Expect = 1.590e-93
Identity = 136/198 (68.69%), Postives = 164/198 (82.83%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    KFA  KR++SPKD R+K N E         ++ ET HV+Q  +++FF +NT LGPPY++LVDTNFINFSIKNKLDIVK+MMDCL AK +PCIT+CV+AELEKLG KYRVALR++KDPRF RLPC HRGTYADDC+V R +QH+CYIVATCD+DLKRRIRK+PGVPIMYIS  K++IERM +A+GAP
Sbjct:    1 MGKAKKTR----KFAAVKRMISPKDMRIKQNQEXXXXXXXXXEDNETRHVEQSSSALFFQYNTQLGPPYYILVDTNFINFSIKNKLDIVKSMMDCLYAKCVPCITDCVMAELEKLGSKYRVALRMAKDPRFDRLPCMHRGTYADDCIVNRIQQHKCYIVATCDRDLKRRIRKVPGVPIMYISQHKYTIERMPDAYGAP 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: U9SSR2_RHIID (Fcf1-domain-containing protein n=8 Tax=Eukaryota TaxID=2759 RepID=U9SSR2_RHIID)

HSP 1 Score: 281 bits (719), Expect = 3.090e-93
Identity = 138/199 (69.35%), Postives = 173/199 (86.93%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRK-KTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    KFA+ KRL++P D RLK   EK++ +++ KTKE+  N V QV +S+FF +NTALGPPY V+VDTNFINFSI+NKL++V++MMDCL AK IPCIT+CV+AELEKLGPKYR+ALR+++DPRF+RLPC H+GTYADDCLVQR  QH+CYIVATCD+DLKRRIRKIPG+PIMYIS R+++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----KFAEVKRLINPADSRLKSIQEKQKKRQEEKTKESVRN-VPQVASSLFFRYNTALGPPYRVMVDTNFINFSIQNKLELVRSMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCMHKGTYADDCLVQRVSQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRRYTIERLPEAYGAP 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: A0A139AXY0_GONPJ (Fcf1-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AXY0_GONPJ)

HSP 1 Score: 280 bits (716), Expect = 8.260e-93
Identity = 132/194 (68.04%), Postives = 166/194 (85.57%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEA 582
            MGKAKK+R    KFA+ KR++SPKD RLK N +K++A+  K  +A   HV+QV +SMFF +NT+L PPY+VL+DTNFINFSI NKLDI+KAMMDCL AK +PC+TECV+ ELEKLGPKYR+AL  ++DPRF++LPCSH+GTYADDCLV+R  QH+CYIVATCD+DLKRRIRK+PG+PIMYISN K++IER+ +A
Sbjct:    1 MGKAKKTR----KFAEVKRMISPKDARLKHNQDKKKAEEAKKTQAVVRHVQQVASSMFFKYNTSLTPPYNVLIDTNFINFSISNKLDIIKAMMDCLFAKCVPCVTECVLGELEKLGPKYRLALMTARDPRFEKLPCSHKGTYADDCLVERVMQHKCYIVATCDRDLKRRIRKVPGIPIMYISNHKYAIERLPDA 190
[Close]
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Match: W2G0I5_PHYPR (PINc domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G0I5_PHYPR)

HSP 1 Score: 281 bits (718), Expect = 8.690e-93
Identity = 141/199 (70.85%), Postives = 170/199 (85.43%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAK--RKKTKEAETNHVKQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKAIPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQRAEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGA 591
            MGKAKK+R    KFA  KR++SP+D R+  ++ K  AK   KK KEAE   + Q+P++MFF +N+ALGPPY+VLVDTNFINFSIKNKL++V AMMDCLLAK+ PCIT+CV+AELEKLG KYRVALRL+KDPRF+RLPC+H+GTYADDCLVQR +QHRCYIVATCD++LKRRIRK+PGVPIMYISNRK+ IER+ EA  A
Sbjct:   19 MGKAKKTR----KFAAVKRMISPRDTRI-NSVRKAVAKVEEKKRKEAEPKQIDQIPSNMFFKYNSALGPPYNVLVDTNFINFSIKNKLEVVSAMMDCLLAKSTPCITDCVMAELEKLGHKYRVALRLAKDPRFERLPCTHKGTYADDCLVQRVQQHRCYIVATCDRELKRRIRKVPGVPIMYISNRKYVIERLPEANAA 212
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1049.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB17_ECTSI8.350e-13495.00PINc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CF02_9STRA2.760e-10978.50Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A397JSP6_9GLOM3.250e-9870.71PINc domain-containing protein n=2 Tax=Glomeromyce... [more]
A0A812Y1D1_SYMMI1.270e-9569.95FCF1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A1Y1ZF27_9FUNG6.800e-9568.69Fcf1-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A397WAQ8_9GLOM2.670e-9469.39Fcf1-domain-containing protein n=2 Tax=Gigaspora T... [more]
UPI0009E606731.590e-9368.69rRNA-processing protein FCF1 homolog n=2 Tax=Scler... [more]
U9SSR2_RHIID3.090e-9369.35Fcf1-domain-containing protein n=8 Tax=Eukaryota T... [more]
A0A139AXY0_GONPJ8.260e-9368.04Fcf1-domain-containing protein n=1 Tax=Gonapodya p... [more]
W2G0I5_PHYPR8.690e-9370.85PINc domain-containing protein n=7 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1049contigA-nodosum_M_contig1049:101508..108151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB17
Preferred nameFCF1
PFAMsFcf1
Model size753
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Exons4
Evalue1.3e-135
EggNOG OGsCOG1412@1|root,KOG3165@2759|Eukaryota
Ec32 ortholog descriptionrRNA-processing protein Fcf1/Utp23
Ec32 orthologEc-27_005600.1
EC2.6.1.62,6.3.3.3
DescriptionRRNA-processing protein FCF1
Cds size603
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.961296-CDS-A-nodosum_M_contig1049:101507..1016301680866423.961296-CDS-A-nodosum_M_contig1049:101507..101630Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 101508..101630 +
1680866423.973947-CDS-A-nodosum_M_contig1049:106738..1068641680866423.973947-CDS-A-nodosum_M_contig1049:106738..106864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 106739..106864 +
1680866423.9823294-CDS-A-nodosum_M_contig1049:107356..1075541680866423.9823294-CDS-A-nodosum_M_contig1049:107356..107554Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 107357..107554 +
1680866423.9929957-CDS-A-nodosum_M_contig1049:107845..1080011680866423.9929957-CDS-A-nodosum_M_contig1049:107845..108001Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 107846..108001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.0026636-UTR-A-nodosum_M_contig1049:108001..1081511680866424.0026636-UTR-A-nodosum_M_contig1049:108001..108151Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1049 108002..108151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1049.8.1prot_A-nodosum_M_contig1049.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1049 101508..108001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1049.8.1

>prot_A-nodosum_M_contig1049.8.1 ID=prot_A-nodosum_M_contig1049.8.1|Name=mRNA_A-nodosum_M_contig1049.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=201bp
MGKAKKSRAVRVKFAKTKRLLSPKDCRLKGNMEKEEAKRKKTKEAETNHV
KQVPTSMFFAHNTALGPPYHVLVDTNFINFSIKNKLDIVKAMMDCLLAKA
IPCITECVVAELEKLGPKYRVALRLSKDPRFQRLPCSHRGTYADDCLVQR
AEQHRCYIVATCDKDLKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
*
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mRNA from alignment at A-nodosum_M_contig1049:101508..108151+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1049.8.1 ID=mRNA_A-nodosum_M_contig1049.8.1|Name=mRNA_A-nodosum_M_contig1049.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6644bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:101508..108151+ (Ascophyllum nodosum dioecious)
ATGGGGAAGGCAAAAAAGTCTCGGGCGGTCCGAGTCAAGTTCGCCAAAAC
GAAGCGCCTCTTAAGCCCGAAAGACTGTCGCCTCAAGGGCAACATGGAGA
AGGAGGAAGCTAAGCGAAAAAAGGTGAGAGGTTTTTCTTGGGAGAACCGA
GGTTTCGGATGGCACTCCAGTACCTCCAAGTAGTACGCTACTGTTTTCGT
GGCATGTGTGGATAGATACCCTAAGCGGGAGGGCCTCATGGGTCTGAACT
TATATGTGGATGTGCGTCGAGCTCTGCTGTTTGTACTGCCCTACACTTAC
ATTACGGAGTACTGAATACGAGTGTGTGTGTTTTGTTCCCATTCGTTCTG
GACATCAAGTTCGTTGAGTACAGTCCTGTAATCGTAAACCTTAACGTATG
TAAACCTTCTGAGCATCTACCTAATCAGGTGGGGGAATTGTCAAAACGTT
TAGGTGGGAACATAGGCTGTAAGAATAAAAACTCTTCTTGGGATTTCACT
GGGTTAAAGTTCCTCAATGGCGGTAGCATCGGGTCGACAGCATGATGTTG
TATTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATACGC
GGTTGCCAATCCGGTACGTGGTCACAAAGAGGTACCAAGGTCAACGTGGC
ACATCATGGTGACAACCCGCTACTCGGACCAACAGGGATCCAAATCGCGA
CAAAAAGTTATGCAACTCTACAAGCGATGGCACCGACCAATAACAAAACG
GTACATCGAACCTCCTTTACTCCATATCGAGAGTAGCCTCGATCGACTCG
GATTGTTGTCGCCTACCCACGGCCAGCGTTCTCAGCAACAAATCGGACAA
ATACGTTCCAACCAGTTTTGATCAACAATATTCCAAGTTTCTCAAGGCCA
CACATCGTACAAAAATAAGGAAAATTGAAATACGGAGGTCCATGGTATGA
TCTGGGAGAAACCCGCCGTTATATTGTCATATGATGCAGGTACACCAAAA
CAGAGGCAAAAATCCACGCTGAACAAAAATAAAACTCGTTTCCATGTACC
AGGTACGTATCTTGTATCATGTTCGACATCGGGTTTCAAGTATTGGTGAA
TCCAAGTCGATTGTACGATGTGCTTGTCGCATAGTCTAGTCTAGTAGGGC
AAATGCCGTAATATCGGGGGGGGAGTGTAAAAGCTAGTCCCTGGTAGGTG
GGAACATAGTCTGCCAAGACGAAAGGTCTTCCATGGGATTTCATTGGGTT
CTCCAATGACATACAAGTAGAGGTATAACCGGGGAGAAACTTACAATTAT
ACTGTACAACGCATGCTGGGCGCGCATCAGGCGGTACTCACGGGAGCTCT
ACGGCCAACCGAAAGTCGCGCTCTCTCTCAAGACCCGGATGGTAAAGGCC
GAAGCAATCGAAGCCCTCCTGTATGGATGCAGTACGTGGACCCTCCGCCA
GGAACACTACGCTAAACTTCGTACCGTACACCACCGGGTCTTGCTTCGCA
TAATCGGAGCGCAGCGCAAGAGACCAGACCACCGGATGACCTCGTACAAC
CGTGCCCTTGAGATTACCGGGTGCGAGAGCATTGAGACAACGTTGCGCAC
GAGAAGACTTTTGTGGGCGGGAACGCTCCTCCGAATGAGCGGCGGGCGGT
TGCCAAAGCGAATCATGTTCGGAAACCTTGAGGGCGCAGTGCGTAGAGGA
CGGGGTGGGAAGGAGAAAGAATGGACCGACTGTGTACAGAGCGACATCCG
GGCGTTTGGCATTACGGGCGATTGGGAAACGATGGCGGTAAAGGCTGAGG
TTTGGGTTGAGGCGGTCACGAAGGGTGGGCGGAGGTTCATGGCCGCGTGG
AGGGAAGAAGAGGAAGACGCGGCTAGACATCGCCAGGAGAAGAGAGAGGC
AACGAGACTGGGAAAGTTGCAATCGCACACGGAAGCGTAGAGTTTTGCGA
AGCGACACCTATTGGCCTAGCTGACGAGTCGTAGGAATCCTTGTACGGAT
GCGAGACGGACCGAGACCACCTGCGTAACGCCGGCTTGCGTAGCGCCTAG
ACATGTGGATGCGCCGCGTGATTTTCTAATTTTTTATTTTATTATTTTTT
TTTTTTTCGAACGAGCAGCGAGCAGCGGGGGTGCGCTGCCAGACTTTTTC
TTTTTCTTTTTTCCCTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTG
TAAAGTAGTTTTTTCGGGTTGGCAACCAATGCGCTGAATGTGAGAAACAA
CAACAACAACAACACTGAACTTGATGTCCAGAATGAATGGGAAGAAAACA
CACACACACACACTTACATAAACGACATTGCAAATACACCAAAAACAGAG
GTCAAAAGCACACGGTGAACCAAAATACAAGACAGTCGTAGTTTCATACC
ATGTTATTGGGTTTGTTACCGTCTTGAAGGATTTAAAAGTGGTGAACGAA
GTCAATCGTAAGATAATAATAAATACCTAAACAATTTGTAAAGTTGTTGT
TTGAAGAAAAATGAGAACGTTGTTTCTCACATTCAGCGTATTGGTTGCCA
ATCCGAAAAAAACTAGTACTTTACACCGTGGCCAATCCCGCTCGTGGTCT
GCTGAACGAGGGAAAAAAAAAAAGTCTGGCAGCGCACCAGTATTAATACT
ACTGTAGTTGAAGTTTACCTTCTCTACATAGACCAAACCAGATTTGTGTA
GTCCGGATTTCTTAGTCCAAATATGTTGTACACCTTGACTCACTTCTCCC
CGATATGATAACTGTTTACCCTATGTGGCTACATTGGGGATCCCTTTTGA
TACGATAAAGGAGTTTTTGTCCCTACAGCCAATGTTCCCACCCAAATGTT
TTGACATTTTTTTCCCTGGGGATGGATTCACAGAAGGTTTATAGAGAGAT
GCGTTCAGATGTTTCTTAAACAGTCACATAGGGTCAAAGCCATTCTAGCT
GTAGCGGGAGAGATCCCCTCTCCTTACAGTACTCTTGTGTTATAATAAAT
AGGAATTTACTGTTATCACCACGCGGGAGGCTAGAATGTATACTGTACAC
AGCAATCTAAAGATAAATCTGAACACGTCTAAACCTTCTCTGAGCATATT
TGGTGAAGTAATAAGGTCGGTTGTTGATTAACCACCTCGTACCTCTGGTA
GGTTTTTAACGAAAAAGCTGAACGCATCTAGAAATTCTGAGCATCACCCA
GTCTATAGGAATTATTAATAGCATGGTACTACCAGTATTATCTTATTTTG
CCTACTTTTTACTATTAATAGTTGATACGGGGCCAGGCTACCTTAGAGTA
GAGGTATGTTTGTATACAGGTGCATACATACGGGAGGTAAGGATGTTGAC
GAATTTGAAAAGAGACTTTTATATTAGAGATTCCCCAAGCGGTCTTCTTT
CTTATTTTGTGCGTTGGCATTATTATTAGCATGGTGCCACTACTGTACCA
TAGATTGCACTGTACTTATTGCTAATAGTGTACCGGTAGAAGGTTACACC
TTCGCGAGCACAAAGCTTTGTACTGTACTTATGTATGTATGTATGTATGT
ATGGTGGTGACACATATAGCAAGAGTAAGGATCAACCGGGTAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAAATACTTCCCTGCCCG
CGTTCACGCCTGAGAATTTGGTCTCGCGAGACGGATTCGGCAGTCCCGTC
CCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTT
CCGGGATTCCTCCCGAGTTCCGCGGCGACGTCCATTATTTCTTTAAAACC
GTCATACGCCATCGGGTAAGTCCCGAGTTTATCGGGTCACGCAAGTGCGT
ACCGATGGCGTTCACTGCGTAGAGTCCGCGGGCACAGGGCCAGTAAACCT
CAAGGCAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAAGT
AATATGCGCCTCTCTTTCCCACACCCACTATTGGTATAAAGTGGCTATAT
CATGTTGAAAGTACCGGTGTTACTGTGGCTTGATTCGGCACAGTGGACCT
CGGATGCTTTCTGTAGCGCACGCCTCCAGCTCCCTTCTACGGAATGGTCT
AATAATATTGTAACTTCGCATACCCGCTATTAATACAGTATCAAAAGAGT
AGTACGGAAGTCGTGAGTTCGATTCTTGTCAAAGCAGAATTTTGAGAACG
TGAGTAAAAGTCGACCATTGGTTGACGAGTTGGAAGCGTGCTGAACTATC
AATAGCGTCGCGATAAAAAAAATCAAGGCGTGAACCGGAGAGAGATGGGA
AGATCCTTTGTGACCACACGCAGGATGGCAACGTTGCAGTAGGTGGGATT
GGTAGCCTAGCTCGTTTGGGCCCATCTGCCGTACGCTACGTGAGTTAGTG
GGTGTGGGAAAAGAGAGACACATGAATTGGTCTATCCATGGTGATACCTG
AAATGGCAATACCCGTTACTCGGACTATCTTGAGGGCTACTGGCCCTGTG
CCGGCGGACTCTTGGCAGTGAACGTCATCGGTACGCATTGCGTGACCTGA
TAAAGTCGGGACTGACCCGACGGCGGTTGACGGTGTAAATAATGAATGCC
GTCGCGGAAAGCGAGAGGAATCCTTTGAGTAAGCACCAGAGTCAGCCTGG
ATATGGAGGATAAGCAGGCTGACGCGGGACGAGACGGCCGAACCTGTCTC
GTGAGGCCAAATTCTCGGGCGCGAACGAGGACAGGGAAATGATCATTTTC
CCTATTCAGCTGACCACGAGCAGGATTGGCAACCCAGAACCTTACTTGGT
TGATCCATACTCTGCTATAAGTTGTGACTATACCTGGTACATACATACAT
ACGAGCAGGATTGGCAACCCAGAACCTTACTCGGTTGATCCATATTCTGC
TATAAGTTATGACAAAAGCTACAAGAACAAAAGCCACGTCTGTAGCAACG
AGTGCGCGAAGGCTCCCGTTGTCTTATTATGTTATGTTACAATAACGCCC
CACCCCTCTTTATTATGTTATGTTACAATAACCCCCCCCCGCCTCTTTCT
TATGTTATTTTACAATAACCCCCCCTCGTTCTTATGTTATGTTACAATAC
CCCCCCCTCGTTCGTATGTTATGTTACAATAACCCCCCCCCCCCTCGCCC
CCCCTTCCCTTCCCCTCCCGTCGTTTGTCCAAACCCCGCAAACGCCCTGC
TTGCTTCGGCCGTCGACGTCGACCACCAAAGACCAAGGAGGCGGAGACCA
ACCACGTGAAGCAGGTTCCCACCTCAATGTTCTTCGCCCACAACACTGCT
CTCGGACCTCCGTACCACGTTCTCGTCGACACCAACTTCATCAACTTCTC
CATCAAGGTCGGTCTGTTGCCAGCTCCACCATGCGCACGGCCGCTCTAGT
GGTGTGACCCCGCGTCAGGAGTCCGACAAAGCCGTCGAATGATTCCTTGA
CGTGCTCTAGTGGTGTGGCCCCGCGTCTTTCCTGTGGTTTCCTTGACATG
CAGCTTCGCCTGTCGGTAGATACACATCCCTATCCTTTTTCCAGTAACAC
GAGTGTATTGTGTGGATGTATGGAGCTACTCAAGGCGTTGGAGACGATCC
TTCACCTGCCCTGCGCGGGGTCTCGGATCTTGAATGTTCGGCTTTGGAGC
TCGAATCCGTACACGATTCCGCACACGATGTCGGTAGCGCGCGGAAGAAG
TCATGAGAAATCGGGAAAAGGTAGCGAGCACGTGAACGACAAGGTTCGAT
TCTCACGCCCGCGAACCTCTACACGGGGCGATCCTTTGGCTTGTTTTTTG
GTACAGTAAAACCCCCCGGGTTGTCGATTTTTGCGCTTTCGCTGAACAGA
ACAAGTTGGATATCGTGAAGGCCATGATGGACTGCTTGCTGGCGAAGGCC
ATACCGTGCATCACAGAGTGCGTCGTGGCCGAGCTTGAGAAACTCGGGCC
CAAGTATCGCGTGGCCCTGCGGCTGTCCAAGGACCCGAGGTTCCAGCGGC
TGCCATGTTCACACCGGGGAACGTACGCCGATGACTGTCTCGTCCAGGTG
AGGAACAATCACAAAATACTTTTACTCGGGCGGAGAGGGGCGAAGTCTGA
CTGAAGTGCTTGACTTTCTCCCACGCGCGCGTCCAATATACAACCCCGGA
CTGTCCTCGCTAGTACCTAATCAAGACGATTGAAATGTTTGTCCAGTAAA
CGGCAACAGGACGGCTTCGTGGAGTGGTCATAAAAAGGAGGCGTTACTCT
AAAGGAAGACACAGTTCGGTTTTGACGGTTGGTCTACTGTTTCCTCATTT
TGACATATTTTTTCTCTCTCTGCACTCTCCTCTCACAGCGCGCGGAGCAG
CACCGGTGCTACATCGTGGCGACCTGCGACAAGGACCTCAAGCGGCGGAT
ACGCAAGATCCCCGGGGTGCCGATCATGTACATCTCCAACCGAAAGTTCT
CGATCGAGCGGATGGCCGAGGCTTTCGGGGCACCCCCGACGTAGCGGCGT
GCTTGCGCTCGACATCACAGCTCTAAGGAAAATCGTTGGTCGCGCCCAAT
AACGTCTCTTGAAAAAGCCACGCTACTAATAAATATGAACACACTAATAA
AAATACTGTTCCGTACTTTTATCTTGTCTTTTTCCCCATTCAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1049:101508..108151+

>mRNA_A-nodosum_M_contig1049.8.1 ID=mRNA_A-nodosum_M_contig1049.8.1|Name=mRNA_A-nodosum_M_contig1049.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=603bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:101508..108151+ (Ascophyllum nodosum dioecious)
ATGGGGAAGGCAAAAAAGTCTCGGGCGGTCCGAGTCAAGTTCGCCAAAAC
GAAGCGCCTCTTAAGCCCGAAAGACTGTCGCCTCAAGGGCAACATGGAGA
AGGAGGAAGCTAAGCGAAAAAAGACCAAGGAGGCGGAGACCAACCACGTG
AAGCAGGTTCCCACCTCAATGTTCTTCGCCCACAACACTGCTCTCGGACC
TCCGTACCACGTTCTCGTCGACACCAACTTCATCAACTTCTCCATCAAGA
ACAAGTTGGATATCGTGAAGGCCATGATGGACTGCTTGCTGGCGAAGGCC
ATACCGTGCATCACAGAGTGCGTCGTGGCCGAGCTTGAGAAACTCGGGCC
CAAGTATCGCGTGGCCCTGCGGCTGTCCAAGGACCCGAGGTTCCAGCGGC
TGCCATGTTCACACCGGGGAACGTACGCCGATGACTGTCTCGTCCAGCGC
GCGGAGCAGCACCGGTGCTACATCGTGGCGACCTGCGACAAGGACCTCAA
GCGGCGGATACGCAAGATCCCCGGGGTGCCGATCATGTACATCTCCAACC
GAAAGTTCTCGATCGAGCGGATGGCCGAGGCTTTCGGGGCACCCCCGACG
TAG
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