mRNA_A-nodosum_M_contig1048.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1048.2.1
Unique NamemRNA_A-nodosum_M_contig1048.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 129 bits (325), Expect = 8.500e-34
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELDD 195
            RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAP VNY+VDFDEWLNIQNGGPP GPE LDD
Sbjct:  196 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPDVNYMVDFDEWLNIQNGGPPAGPELLDD 260          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 128 bits (322), Expect = 3.930e-33
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELDD 195
            RATFVGVETGPF+SQLLVNSFTID+ITVEPKQETFAP +NY+VDFDEWLNIQNGGPP GPEELD+
Sbjct:  315 RATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGPEELDE 379          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.550e-22
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELDD 195
            R++  GVETGPFISQLLV  FTIDSITV P Q+TFAPG +Y+ D+DEWL+IQNGG P    +LDD
Sbjct:  251 RSSAFGVETGPFISQLLVKDFTIDSITVTPMQKTFAPGADYMTDYDEWLSIQNGGSPDSEADLDD 315          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 95.1 bits (235), Expect = 2.650e-21
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELD 192
            R++ VGVE GP +SQLLVN+FTIDSITVE KQ TFAPG +Y+ +FDEWL+IQNG  PV PE LD
Sbjct:  244 RSSAVGVEIGPHVSQLLVNNFTIDSITVEAKQNTFAPGEDYMAEFDEWLSIQNGEFPVEPEILD 307          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.840e-18
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELDD 195
            R +  GVETGPFISQLLV  FTIDSITV P Q+TF PG +Y+ D+DEWL IQNGG P   + L D
Sbjct:  250 RTSAFGVETGPFISQLLVQDFTIDSITVAPIQKTFEPGADYMADYDEWLFIQNGGVPDHDDVLFD 314          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: UPI00187FF134 (vanadium-dependent haloperoxidase n=1 Tax=unclassified Nodularia TaxID=2656917 RepID=UPI00187FF134)

HSP 1 Score: 66.6 bits (161), Expect = 2.780e-11
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNG-GPPVGPEELD 192
            R  + G   GP+ISQ L+      S+T+  +Q+T  P +NYL D+D+WLN+QNG   P+G ++ D
Sbjct:  201 RGNYAGDLVGPYISQFLLKDIPYGSLTISQRQKTVLPDINYLTDYDDWLNVQNGDSDPIGKDKFD 265          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: A0ZCI9_NODSP (Uncharacterized protein n=2 Tax=Nodularia spumigena TaxID=70799 RepID=A0ZCI9_NODSP)

HSP 1 Score: 66.2 bits (160), Expect = 3.790e-11
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGG 165
            R  + G   GP+ISQ L+      S+T+  +Q+T  P +NYL D+DEWLN+QNGG
Sbjct:  198 RGNYAGDLVGPYISQFLLKDIPYGSLTISQRQKTVQPDINYLTDYDEWLNVQNGG 252          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: UPI0013E8E755 (NTTRR-F1 domain n=1 Tax=Longirhabdus pacifica TaxID=2305227 RepID=UPI0013E8E755)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-10
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELD 192
            R +  G   GP+ISQ L     + S T E +  T  PG N+L D+ EWLN+QNG PP  PE+ D
Sbjct:  345 RGSTPGDLKGPYISQFLFQDIPMGSATFEQRYRTTLPGTNFLTDYKEWLNVQNGEPPSFPEQFD 408          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: UPI0019EFA36E (Vanadium-dependent haloperoxidase n=1 Tax=Nostocales cyanobacterium LEGE 11386 TaxID=1828825 RepID=UPI0019EFA36E)

HSP 1 Score: 63.5 bits (153), Expect = 3.390e-10
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGGPPVGPEELD 192
            R  + G   GP+ISQ L+      S+T+  +QET    V+Y+ ++DEWLN+QNGG  VG ++ D
Sbjct:  216 RGNYAGDLVGPYISQFLLKDIPYGSLTISQRQETVVANVDYMTEYDEWLNVQNGGS-VGQDKFD 278          
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Match: A0A2R5FTI7_NOSCO (Twin-arginine translocation pathway signal n=1 Tax=Nostoc commune NIES-4072 TaxID=2005467 RepID=A0A2R5FTI7_NOSCO)

HSP 1 Score: 60.5 bits (145), Expect = 3.960e-9
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLNIQNGG 165
            R    G   GP+ISQLL+      S+T+  KQ+T    +NYL D++ WLNIQNGG
Sbjct:  198 RGIHTGDLVGPYISQLLLKDIPFGSLTISQKQKTVQRDINYLTDYETWLNIQNGG 252          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1048.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PRXV_ASCNO8.500e-3493.85Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI3.930e-3389.23Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
Q4LDE6_9PHAE7.550e-2267.69Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA2.650e-2170.31Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM6_9PHAE1.840e-1864.62Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
UPI00187FF1342.780e-1141.54vanadium-dependent haloperoxidase n=1 Tax=unclassi... [more]
A0ZCI9_NODSP3.790e-1147.27Uncharacterized protein n=2 Tax=Nodularia spumigen... [more]
UPI0013E8E7551.330e-1045.31NTTRR-F1 domain n=1 Tax=Longirhabdus pacifica TaxI... [more]
UPI0019EFA36E3.390e-1042.19Vanadium-dependent haloperoxidase n=1 Tax=Nostocal... [more]
A0A2R5FTI7_NOSCO3.960e-947.27Twin-arginine translocation pathway signal n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1048contigA-nodosum_M_contig1048:66057..66830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog313624.NSP_46940
Model size197
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.22e-12
EggNOG OGsCOG0671@1|root,COG0671@2|Bacteria,1G24P@1117|Cyanobacteria,1HK6H@1161|Nostocales
Descriptionphosphoesterase, PA-phosphatase related
Cds size195
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.5754735-CDS-A-nodosum_M_contig1048:66056..661011680866423.5754735-CDS-A-nodosum_M_contig1048:66056..66101Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1048 66057..66101 +
1680866423.5851467-CDS-A-nodosum_M_contig1048:66358..664691680866423.5851467-CDS-A-nodosum_M_contig1048:66358..66469Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1048 66359..66469 +
1680866423.6000576-CDS-A-nodosum_M_contig1048:66789..668281680866423.6000576-CDS-A-nodosum_M_contig1048:66789..66828Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1048 66790..66828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1048.2.1prot_A-nodosum_M_contig1048.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1048 66057..66828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1048.2.1

>prot_A-nodosum_M_contig1048.2.1 ID=prot_A-nodosum_M_contig1048.2.1|Name=mRNA_A-nodosum_M_contig1048.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
RATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPGVNYLVDFDEWLN
IQNGGPPVGPEELDD
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mRNA from alignment at A-nodosum_M_contig1048:66057..66830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1048.2.1 ID=mRNA_A-nodosum_M_contig1048.2.1|Name=mRNA_A-nodosum_M_contig1048.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at A-nodosum_M_contig1048:66057..66830+ (Ascophyllum nodosum dioecious)
CGAGCGACCTTCGTTGGCGTCGAAACGGGGCCCTTTATCTCTCAGGTGTG GTGATGATGTACAGCTCATGAGACTGACACTCATATTTCGTTTAATTATA ACCACACAAAACGGCGCATCTCCTCGGCAGGGCACCTTCATTTTGCAAAG ACTAGTTAGAAGGTGCACAGTAAGCAGTCCTCAGTCTCATATCTACACGG CTGTTCATTTTTTATATAAGACAGGCTATTCACATTTTTCGACGCCCCCC TTCTCCTCCCCTCTTCATTTCTGCTCGACTCACGTCGTCGCTTTCTAAAC AGCTGCTCGTGAACAGCTTCACCATCGACTCTATTACGGTCGAACCGAAG CAGGAGACATTCGCCCCCGGCGTGAACTACTTGGTCGATTTTGACGAATG GCTAAACATTCAGGTAAGTCCAGTCCAACCGTCTCGTCTTTGAACGAGTC CTTGATGAGACGCGACTTATTTTTAAGTTTATCTTTCAAAAAGAAGCTTC CATTACGCCCTGCAAACCGCGTTTTCGGGGTTCAGAACGGCATTTTTTAA AGTATTTTGACTTACATAGCATTTCCGCTTGTGGTCATTGCAGAGTTTAC AGTACACGACGACAATAACACAAATGTGCCTTAGTATTGTTTGCCTGTCA CTAGCTGACCTTCAAGCAGTATCATCTATATTTGTGGCGAATGGTCCTTG CTTGCACTTTCTTGTTGTTGTCTTGTTGTGCAGAATGGTGGGCCCCCGGT CGGCCCCGAAGAGTTAGACGACGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1048:66057..66830+

>mRNA_A-nodosum_M_contig1048.2.1 ID=mRNA_A-nodosum_M_contig1048.2.1|Name=mRNA_A-nodosum_M_contig1048.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig1048:66057..66830+ (Ascophyllum nodosum dioecious)
CGAGCGACCTTCGTTGGCGTCGAAACGGGGCCCTTTATCTCTCAGCTGCT
CGTGAACAGCTTCACCATCGACTCTATTACGGTCGAACCGAAGCAGGAGA
CATTCGCCCCCGGCGTGAACTACTTGGTCGATTTTGACGAATGGCTAAAC
ATTCAGAATGGTGGGCCCCCGGTCGGCCCCGAAGAGTTAGACGAC
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