mRNA_A-nodosum_M_contig1048.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1048.1.1
Unique NamemRNA_A-nodosum_M_contig1048.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1048.1.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 85.9 bits (211), Expect = 5.690e-18
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:   81 EAYRGALILLELDAFNRAGVNGPFIDSDRQSGFVNFGTSHYFRL 212
            EAYRGALILL LDAFNRAGVNGPFID DRQ+GFVNFG SHYFRL
Sbjct:  283 EAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNFGISHYFRL 326
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BLAST of mRNA_A-nodosum_M_contig1048.1.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-17
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 3 
Query:   81 EAYRGALILLELDAFNRAGVNGPFIDSDRQSGFVNFGTSHYFRL 212
            EAYRG+LILLEL AF+R G+NGPFIDSDRQ+GFVNFGTSHYFRL
Sbjct:  402 EAYRGSLILLELGAFSRPGINGPFIDSDRQAGFVNFGTSHYFRL 445
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BLAST of mRNA_A-nodosum_M_contig1048.1.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-7
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   81 EAYRGALILLELD-------AFNRAGVNGPFIDSDRQSGFVNFGTSHYFRL 212
            EAYR ALILL+ D       A +  G+NGP+ DS RQ+GFVN+G SH  RL
Sbjct:  338 EAYRAALILLDPDQGADGRAAISAPGLNGPYADSSRQAGFVNYGVSHLMRL 388
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1048.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
PRXV_ASCNO5.690e-1890.91Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI1.080e-1786.36Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
Q4LDE6_9PHAE1.160e-754.90Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1048contigA-nodosum_M_contig1048:28688..29089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.534594-CDS-A-nodosum_M_contig1048:28687..287671680866423.534594-CDS-A-nodosum_M_contig1048:28687..28767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1048 28688..28767 +
1680866423.5449882-CDS-A-nodosum_M_contig1048:28956..290891680866423.5449882-CDS-A-nodosum_M_contig1048:28956..29089Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1048 28957..29089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1048.1.1prot_A-nodosum_M_contig1048.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1048 28688..29089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1048.1.1

>prot_A-nodosum_M_contig1048.1.1 ID=prot_A-nodosum_M_contig1048.1.1|Name=mRNA_A-nodosum_M_contig1048.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
EELDDVRRFVRNARDLARVSFTDNINTKLIAGLLSCSSWTPSTGPVSTAH
SSTVIASRASSTSARLTTSD*
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mRNA from alignment at A-nodosum_M_contig1048:28688..29089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1048.1.1 ID=mRNA_A-nodosum_M_contig1048.1.1|Name=mRNA_A-nodosum_M_contig1048.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig1048:28688..29089+ (Ascophyllum nodosum dioecious)
GAAGAGTTAGACGACGTGCGGCGTTTCGTCCGTAACGCCCGCGACCTGGC
CAGGGTCTCCTTCACAGACAATATCAACACGTGAGCTATTCTAACCAAAT
ACAATTGAGCACCTTGAAGTTTCCTTTAGCTCTCTAAACAGCCCTTTACG
ACACCATCCATGGATGCCTTCTTTGCTCATTTCCTAGTCTCAGGAGGTCA
TAACCTTGTTCTCACTCCGGAGGTCATAACCTTAACTACCGAATTTTTAC
ATGTTTTAAAAACCGCCAGGAAGCTTATCGCGGGGCTCTTATCCTGCTCG
AGCTGGACGCCTTCAACAGGGCCGGTGTCAACGGCCCATTCATCGACAGT
GATCGCCAGTCGGGCTTCGTCAACTTCGGCACGTCTCACTACTTCAGATT
GA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1048:28688..29089+

>mRNA_A-nodosum_M_contig1048.1.1 ID=mRNA_A-nodosum_M_contig1048.1.1|Name=mRNA_A-nodosum_M_contig1048.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig1048:28688..29089+ (Ascophyllum nodosum dioecious)
GAAGAGTTAGACGACGTGCGGCGTTTCGTCCGTAACGCCCGCGACCTGGC
CAGGGTCTCCTTCACAGACAATATCAACACGAAGCTTATCGCGGGGCTCT
TATCCTGCTCGAGCTGGACGCCTTCAACAGGGCCGGTGTCAACGGCCCAT
TCATCGACAGTGATCGCCAGTCGGGCTTCGTCAACTTCGGCACGTCTCAC
TACTTCAGATTGA
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