mRNA_A-nodosum_M_contig1047.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.16.1
Unique NamemRNA_A-nodosum_M_contig1047.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:61637..62200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size419
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.5066013-CDS-A-nodosum_M_contig1047:61636..616711680866421.5066013-CDS-A-nodosum_M_contig1047:61636..61671Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 61637..61671 +
1680866421.5205324-CDS-A-nodosum_M_contig1047:61817..621991680866421.5205324-CDS-A-nodosum_M_contig1047:61817..62199Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 61818..62199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.16.1prot_A-nodosum_M_contig1047.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 61637..62199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.16.1

>prot_A-nodosum_M_contig1047.16.1 ID=prot_A-nodosum_M_contig1047.16.1|Name=mRNA_A-nodosum_M_contig1047.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
KTQSHLESYWKTHNENRNARETLSGVPNIIRPLREPGVIEGPAATAAVVW
PPPGPTPAQEPGAAGLPTGPAPAQQAQGVMYNAGHNGSHFINEGAQEGGG
RMKRRRAPQHCSDCGHLKQTGPFSRYHVPSLPRARHSPS
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mRNA from alignment at A-nodosum_M_contig1047:61637..62200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.16.1 ID=mRNA_A-nodosum_M_contig1047.16.1|Name=mRNA_A-nodosum_M_contig1047.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:61637..62200+ (Ascophyllum nodosum dioecious)
AAGACGCAGTCGCATCTCGAGTCGTACTGGAAAACGTGAGTGATCTAAGC
ACTTTTATTTGTTTTGTCGCGTCTTGCCGGTCAACCTTTTGTGTCGCGCG
TCCGGACGACGTACATGTGTTGTCAGCGGACACGTGATTCACCTGTACTC
CCTTTCGGCGGCGCTGTTAATTTTTTGCAAGGCACAACGAGAACCGCAAC
GCGAGGGAGACGCTGAGCGGAGTGCCGAACATAATTCGCCCGCTCCGTGA
ACCTGGAGTTATTGAGGGCCCTGCTGCTACCGCAGCGGTGGTGTGGCCGC
CTCCGGGGCCCACCCCAGCACAAGAACCAGGGGCGGCGGGGCTGCCTACG
GGACCTGCCCCAGCCCAGCAAGCACAAGGCGTGATGTACAATGCTGGACA
TAACGGTTCCCACTTCATCAACGAGGGCGCGCAAGAGGGGGGGGGGAGGA
TGAAGAGACGGCGTGCCCCCCAGCACTGTTCCGACTGCGGTCACTTGAAG
CAGACGGGGCCCTTCAGCCGGTACCACGTGCCATCGTTGCCTAGAGCTCG
ACATAGCCCTTCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:61637..62200+

>mRNA_A-nodosum_M_contig1047.16.1 ID=mRNA_A-nodosum_M_contig1047.16.1|Name=mRNA_A-nodosum_M_contig1047.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:61637..62200+ (Ascophyllum nodosum dioecious)
AAGACGCAGTCGCATCTCGAGTCGTACTGGAAAACGCACAACGAGAACCG
CAACGCGAGGGAGACGCTGAGCGGAGTGCCGAACATAATTCGCCCGCTCC
GTGAACCTGGAGTTATTGAGGGCCCTGCTGCTACCGCAGCGGTGGTGTGG
CCGCCTCCGGGGCCCACCCCAGCACAAGAACCAGGGGCGGCGGGGCTGCC
TACGGGACCTGCCCCAGCCCAGCAAGCACAAGGCGTGATGTACAATGCTG
GACATAACGGTTCCCACTTCATCAACGAGGGCGCGCAAGAGGGGGGGGGG
AGGATGAAGAGACGGCGTGCCCCCCAGCACTGTTCCGACTGCGGTCACTT
GAAGCAGACGGGGCCCTTCAGCCGGTACCACGTGCCATCGTTGCCTAGAG
CTCGACATAGCCCTTCC
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