mRNA_A-nodosum_M_contig1047.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.14.1
Unique NamemRNA_A-nodosum_M_contig1047.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.030e-17
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:  667 WLKELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            +LK  GL++KLD FHAMQR+SKL+LKSHGACRA+L RLRDAFFKV   DL  VE ALRQ G
Sbjct:  696 FLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAG 756
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-7
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  655 DDGFWLKELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            DD    ++  L ++LD FHA+QR+S+L  KSHGA + F+ RLRDA F V + D+ EVE AL  +G
Sbjct:  488 DDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKG 552
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-7
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  712 AMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            A   +SKL+LKSHGACRA+L RLRD FFKV   DL  VE ALRQ G
Sbjct:  313 AAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAG 358
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 2.100e-7
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  658 DGFWLKELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            DGF LK     ++LD FHAM R++K +LKSHGA + F+ RLRDAFF + + DL  V  AL+  G
Sbjct:  429 DGFILK-----VRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAG 487
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.050e-7
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  655 DDGFWLKELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            DD    ++  L ++LD FHA+QR+S+L  KSHGA + F+ RL+DA F V + D+ EVE AL  +G
Sbjct:  774 DDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLKDACFIVNQDDIKEVEQALGSKG 838
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.060e-6
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  655 DDGFWLK--ELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVE---VETALRQQG 849
            D  +W+   E  L ++LD FHA+QR+SKL  KSHGA R F+ RLRDA F V   D+ E   VE AL  +G
Sbjct:  164 DMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKG 233
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.490e-5
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  655 DDGFWLK--ELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVE---VETALRQQG 849
            D  +W+   E  L ++LD FHA+QR+SKL  KSHGA + F+ RLRDA F V   D+ E   VE AL  +G
Sbjct:  164 DMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKG 233
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.740e-5
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  691 IKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETALRQQG 849
            ++LD FHA+ RLS+ + K HGA R  + RLRDA F V R D++++E  L ++G
Sbjct:  545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRG 597
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BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Match: A0A6H5KWT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.640e-5
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  655 DDGFWLK--ELGLLIKLDPFHAMQRLSKLVLKSHGACRAFLTRLRDAFFKVYRSDLVEVETA 834
            D  +W+   E  L ++LD FHA+QR+SKL  KSHGA + F+ RLRDA F V   D+ E   A
Sbjct:  276 DMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASRA 337
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE9.030e-1772.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI1.180e-749.23Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5KEU8_9PHAE1.500e-767.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG2.100e-751.563'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV2_ECTSI3.050e-747.693'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KLP1_9PHAE7.060e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE1.490e-548.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI1.740e-547.173'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KWT5_9PHAE3.640e-548.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:59327..60341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIV1
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size853
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue7.63e-09
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size684
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.441876-UTR-A-nodosum_M_contig1047:59326..594641680866421.441876-UTR-A-nodosum_M_contig1047:59326..59464Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 59327..59464 +
1680866421.4532692-UTR-A-nodosum_M_contig1047:59477..595071680866421.4532692-UTR-A-nodosum_M_contig1047:59477..59507Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 59478..59507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.4643679-CDS-A-nodosum_M_contig1047:59507..600141680866421.4643679-CDS-A-nodosum_M_contig1047:59507..60014Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 59508..60014 +
1680866421.4759736-CDS-A-nodosum_M_contig1047:60164..603411680866421.4759736-CDS-A-nodosum_M_contig1047:60164..60341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 60165..60341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.14.1prot_A-nodosum_M_contig1047.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 59508..60341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.14.1

>prot_A-nodosum_M_contig1047.14.1 ID=prot_A-nodosum_M_contig1047.14.1|Name=mRNA_A-nodosum_M_contig1047.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=228bp
MRKRPTSTAAPVPGAVEHGTVQEVGDAIGTPRGGTEQDRGQASAGGSSTG
AACTTSGDSDPLFTTPSESFFSGRLAGMEKLSFAVAGERKDEEEDGGEYG
EPTVGLGSPDGEGVGYGAKAEGDDNSDVEVMEMSDVEEEAERDDANAAPE
KGKGKSRSRKKEDDGFWLKELGLLIKLDPFHAMQRLSKLVLKSHGACRAF
LTRLRDAFFKVYRSDLVEVETALRQQGK
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mRNA from alignment at A-nodosum_M_contig1047:59327..60341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.14.1 ID=mRNA_A-nodosum_M_contig1047.14.1|Name=mRNA_A-nodosum_M_contig1047.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1015bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:59327..60341+ (Ascophyllum nodosum dioecious)
CCTTCTCGTACCTGCGATAACCACTCGCGCTAGGGTGCGGAGATGGATCG
TCCGGGTTGATGAGGTCTTGATGCCGGGCGCGCATACCCTGTACCCGAAC
AGCGACGAGGTAGGCACGGGCAACGCGAGAGGACAGATGGAGGGCAAAGA
GGGGGGGCTTGTGCTGTGGGACGCTAGCCGCATGCGCAAGCGCCCAACCA
GCACCGCTGCTCCAGTCCCCGGGGCTGTAGAGCACGGCACCGTTCAGGAA
GTGGGAGATGCGATAGGCACGCCTAGAGGTGGCACGGAGCAGGACAGGGG
GCAGGCGAGCGCGGGAGGCAGTTCGACCGGAGCCGCCTGCACAACGTCTG
GCGACAGTGACCCACTGTTTACTACGCCTTCGGAGAGCTTTTTCAGCGGG
CGCCTAGCTGGCATGGAAAAGCTCAGCTTTGCAGTGGCTGGGGAAAGGAA
GGACGAAGAGGAGGATGGCGGAGAGTATGGAGAACCAACTGTAGGTTTGG
GCTCCCCCGACGGAGAAGGGGTGGGCTATGGTGCCAAGGCCGAGGGCGAT
GACAATAGTGACGTCGAGGTCATGGAGATGAGCGATGTCGAAGAGGAGGC
CGAGAGGGATGATGCGAACGCTGCTCCCGAAAAGGGAAAAGGAAAGTCTC
GTTCGAGGAAGAAGGAAGACGACGGCTTCTGGCTCAAGGTGAGTGTTGTA
TTGTACTTCCCGCCGCAGAAGTGTTGTTATGTGCGTTTGCGTTGCACATT
TTGTCTCCAGCGAGTTGTCCCTCGTCGCTTCCATCGCGAGAATCTTACCA
GTATTCCTTTTCTTGTCTTGCTCTATCCCTAATTACAGGAGCTCGGCCTT
TTGATAAAGCTCGACCCCTTTCATGCGATGCAGCGATTGAGCAAGCTCGT
CCTCAAGAGTCATGGAGCGTGTCGTGCTTTTCTAACGCGCTTGCGTGACG
CTTTCTTCAAAGTTTACCGATCTGATCTCGTGGAAGTCGAGACGGCGCTC
CGTCAGCAGGGAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:59327..60341+

>mRNA_A-nodosum_M_contig1047.14.1 ID=mRNA_A-nodosum_M_contig1047.14.1|Name=mRNA_A-nodosum_M_contig1047.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:59327..60341+ (Ascophyllum nodosum dioecious)
ATGCGCAAGCGCCCAACCAGCACCGCTGCTCCAGTCCCCGGGGCTGTAGA
GCACGGCACCGTTCAGGAAGTGGGAGATGCGATAGGCACGCCTAGAGGTG
GCACGGAGCAGGACAGGGGGCAGGCGAGCGCGGGAGGCAGTTCGACCGGA
GCCGCCTGCACAACGTCTGGCGACAGTGACCCACTGTTTACTACGCCTTC
GGAGAGCTTTTTCAGCGGGCGCCTAGCTGGCATGGAAAAGCTCAGCTTTG
CAGTGGCTGGGGAAAGGAAGGACGAAGAGGAGGATGGCGGAGAGTATGGA
GAACCAACTGTAGGTTTGGGCTCCCCCGACGGAGAAGGGGTGGGCTATGG
TGCCAAGGCCGAGGGCGATGACAATAGTGACGTCGAGGTCATGGAGATGA
GCGATGTCGAAGAGGAGGCCGAGAGGGATGATGCGAACGCTGCTCCCGAA
AAGGGAAAAGGAAAGTCTCGTTCGAGGAAGAAGGAAGACGACGGCTTCTG
GCTCAAGGAGCTCGGCCTTTTGATAAAGCTCGACCCCTTTCATGCGATGC
AGCGATTGAGCAAGCTCGTCCTCAAGAGTCATGGAGCGTGTCGTGCTTTT
CTAACGCGCTTGCGTGACGCTTTCTTCAAAGTTTACCGATCTGATCTCGT
GGAAGTCGAGACGGCGCTCCGTCAGCAGGGAAAG
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