mRNA_A-nodosum_M_contig10448.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10448.1.1
Unique NamemRNA_A-nodosum_M_contig10448.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10448.1.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.310e-22
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1 
Query:    7 WHLRFRAHLDGMGLGYTLDHAATP--VPVKG--DQRDLILRYGEQPVQHAQAAWACLLDATAGAAFEERVLSAVTVRDAWCQILSWTGPSSEAETFFLERQLETVPNYGDENPKFFFSRVDQLLTRLRSANIHKTERQIVNILVRNLSDHYEIEKRSRL 471
            W  R R  L   GL  TLDH      V + G  D+  L   +G   V     AW  L+++T+G+  EE + +   V +AW  I  W+ P+++AE   LERQLETV     ENPK FF+RVD ++  +R+  I K+ERQIV  +VR LS  Y++E+++ L
Sbjct:  395 WSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTL 553
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10448.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE1.310e-2239.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10448contigA-nodosum_M_contig10448:12271..12831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.1280327-UTR-A-nodosum_M_contig10448:12270..122731680866419.1280327-UTR-A-nodosum_M_contig10448:12270..12273Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10448 12271..12273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.1370041-CDS-A-nodosum_M_contig10448:12273..128311680866419.1370041-CDS-A-nodosum_M_contig10448:12273..12831Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10448 12274..12831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10448.1.1prot_A-nodosum_M_contig10448.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10448 12274..12831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10448.1.1

>prot_A-nodosum_M_contig10448.1.1 ID=prot_A-nodosum_M_contig10448.1.1|Name=mRNA_A-nodosum_M_contig10448.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MWHLRFRAHLDGMGLGYTLDHAATPVPVKGDQRDLILRYGEQPVQHAQAA
WACLLDATAGAAFEERVLSAVTVRDAWCQILSWTGPSSEAETFFLERQLE
TVPNYGDENPKFFFSRVDQLLTRLRSANIHKTERQIVNILVRNLSDHYEI
EKRSRLDSPLLRRQDVEHIVRASWATRKTRQLEHRS
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mRNA from alignment at A-nodosum_M_contig10448:12271..12831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10448.1.1 ID=mRNA_A-nodosum_M_contig10448.1.1|Name=mRNA_A-nodosum_M_contig10448.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at A-nodosum_M_contig10448:12271..12831+ (Ascophyllum nodosum dioecious)
GCGATGTGGCATTTGCGTTTTAGGGCCCACTTGGATGGCATGGGTCTGGG
GTACACGTTGGACCACGCGGCCACTCCTGTCCCTGTGAAGGGGGACCAGC
GTGATTTGATTTTGCGGTACGGTGAGCAGCCCGTGCAGCATGCTCAAGCG
GCATGGGCGTGTCTCTTGGACGCCACCGCGGGAGCTGCTTTTGAGGAGAG
AGTGCTGTCGGCCGTAACGGTGAGGGATGCATGGTGCCAAATTTTGAGTT
GGACCGGGCCTTCCAGCGAGGCCGAAACATTCTTTCTCGAGAGGCAGCTC
GAAACTGTTCCTAACTACGGGGATGAGAACCCCAAATTTTTCTTTTCTAG
AGTGGACCAGTTACTTACGCGCCTGCGATCGGCCAATATCCACAAAACCG
AGAGGCAGATCGTTAACATCCTCGTCCGCAATCTTTCCGATCACTACGAG
ATCGAGAAGCGCTCCCGACTTGACTCTCCTCTTCTCCGGCGCCAAGACGT
GGAGCATATTGTTCGTGCCTCCTGGGCCACCCGCAAGACGCGCCAGCTCG
AACATCGGTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10448:12271..12831+

>mRNA_A-nodosum_M_contig10448.1.1 ID=mRNA_A-nodosum_M_contig10448.1.1|Name=mRNA_A-nodosum_M_contig10448.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig10448:12271..12831+ (Ascophyllum nodosum dioecious)
ATGTGGCATTTGCGTTTTAGGGCCCACTTGGATGGCATGGGTCTGGGGTA
CACGTTGGACCACGCGGCCACTCCTGTCCCTGTGAAGGGGGACCAGCGTG
ATTTGATTTTGCGGTACGGTGAGCAGCCCGTGCAGCATGCTCAAGCGGCA
TGGGCGTGTCTCTTGGACGCCACCGCGGGAGCTGCTTTTGAGGAGAGAGT
GCTGTCGGCCGTAACGGTGAGGGATGCATGGTGCCAAATTTTGAGTTGGA
CCGGGCCTTCCAGCGAGGCCGAAACATTCTTTCTCGAGAGGCAGCTCGAA
ACTGTTCCTAACTACGGGGATGAGAACCCCAAATTTTTCTTTTCTAGAGT
GGACCAGTTACTTACGCGCCTGCGATCGGCCAATATCCACAAAACCGAGA
GGCAGATCGTTAACATCCTCGTCCGCAATCTTTCCGATCACTACGAGATC
GAGAAGCGCTCCCGACTTGACTCTCCTCTTCTCCGGCGCCAAGACGTGGA
GCATATTGTTCGTGCCTCCTGGGCCACCCGCAAGACGCGCCAGCTCGAAC
ATCGGTCG
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