mRNA_A-nodosum_M_contig1044.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1044.3.1
Unique NamemRNA_A-nodosum_M_contig1044.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1044.3.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-10
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 3 
Query:    3 STMQLQLASLQFCVVCRSVSTLHLIMEEGMCTLLFED--APASDIKAK--------KLCRTRVPTIQPLKLTWMLPKSCLKRFSSEALENVEQLTFWD---KFNDEVNDVAWPSALK 314
            ST+QLQLAS++FCV CRSVSTLHL +EEG    L+ D  +  SD            +    RVP  +P ++TW LP S L   S +A +N+E ++F D   +  D  + VA P  LK
Sbjct:   16 STVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLK 132
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BLAST of mRNA_A-nodosum_M_contig1044.3.1 vs. uniprot
Match: D8LSQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.220e-7
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 3 
Query:    3 STMQLQLASLQFCVVCRSVSTLHLIMEEGMCTLLF-EDAPASDIKAKKLCR-TRVPTIQPLKLTWMLPKSCLKRFS-SEALENVEQLTFWD-KFNDEVNDVAWPSALK 314
            ST  LQLASLQFCV CRS ST+ L ++      L+ +D+     ++ ++CR +RVP +   ++ W+LP S L   S S  L N++ L+F    FND ++ VA P  LK
Sbjct:    2 STTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARVCRASRVPALHAREVLWILPASMLNATSDSLKLSNLQLLSFVGANFNDSLSGVALPRGLK 109
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BLAST of mRNA_A-nodosum_M_contig1044.3.1 vs. uniprot
Match: D8LRD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.450e-6
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 3 
Query:    9 MQLQLASLQFCVVCRSVSTLHLIMEEGMCTLLFEDAPASDIKAKKLCRT-RVPTIQPLKLTWMLPKSCLKRFSSEALENVEQLTFWDKFNDEVNDVAWPSALK 314
            MQLQLASLQ C+ CRSV  LH+ ++    T L+   P  + +  K  R  RVP +Q   +TW L    L   S E+L +V    F ++  D+V  + WP A++
Sbjct:    1 MQLQLASLQLCISCRSVPRLHVRVDRSTPTPLWARPPERETRRAKQRRVGRVPVVQARVVTWKLSSQRLG-LSGESLASVPCFIFGNQGIDQVGGMRWPPAIQ 102
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BLAST of mRNA_A-nodosum_M_contig1044.3.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.290e-6
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:    3 STMQLQLASLQFCVVCRSVSTLHLIMEEG-MCTLLFEDAPASDIK--AKKLCRTRVPTIQPLKLTWMLPKSCLKRFSSEALENVEQLTFWDKFNDEVNDVAWPSALKR 317
            ST +LQLASLQFCV CR V +LHL +    +   L+ D  A++ +  AK+   T VP  +P ++TW  P   L   S   L   +   F  + +  V+DV WP  LK+
Sbjct:   27 STKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLL---SDICLVFAKVERFLVRQDTVVDDVVWPCRLKK 131
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1044.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG83_9PHAE1.380e-1041.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ7_ECTSI6.220e-740.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRD1_ECTSI1.450e-637.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXS2_ECTSI7.290e-637.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1044contigA-nodosum_M_contig1044:110599..112766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2168
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1524
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.992682-UTR-A-nodosum_M_contig1044:110598..1112341680866418.992682-UTR-A-nodosum_M_contig1044:110598..111234Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1044 110599..111234 -
1680866419.0109682-UTR-A-nodosum_M_contig1044:112758..1127661680866419.0109682-UTR-A-nodosum_M_contig1044:112758..112766Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1044 112759..112766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.0016532-CDS-A-nodosum_M_contig1044:111234..1127581680866419.0016532-CDS-A-nodosum_M_contig1044:111234..112758Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1044 111235..112758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1044.3.1prot_A-nodosum_M_contig1044.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1044 111235..112758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1044.3.1

>prot_A-nodosum_M_contig1044.3.1 ID=prot_A-nodosum_M_contig1044.3.1|Name=mRNA_A-nodosum_M_contig1044.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=508bp
MQLQLASLQFCVVCRSVSTLHLIMEEGMCTLLFEDAPASDIKAKKLCRTR
VPTIQPLKLTWMLPKSCLKRFSSEALENVEQLTFWDKFNDEVNDVAWPSA
LKRLTFGHRFNQAVDKVMWPALLQQLTFEGYFNQPIDRVVWPVSLQKLEF
GHDFNQPIGRVVWPSSLQQLKFKCSFNQPIEGVVWPASLQKLEFGGCFNQ
PIGRVVWPASLQHLDLGEIFDQAIDGVMWPASLRQLEFGWAFNKAINGVI
WPASLHQLKFKYYFNQPIDGVLWPASLQKLEFGYHFNQPIGRVVWPVSLQ
ELKFRYGFNQPIEGVVWPASLQKLEFGCLFNQPIGRVVWPASLQRLDFGS
DFNQAIDSVLWPASLQQLNFGEDFDQAIDGVVWPASLQQLVLGVYFNQAI
DGVMWPASLRQLKLGTHFDQAIDGVMWPASLQQLEFGISFNQPIDGVVWP
ASLQQLKFGICFNQPIDRVIWPASLQLLKFGISFDQPIGGVVWPASLRRL
EFGTCIK*
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mRNA from alignment at A-nodosum_M_contig1044:110599..112766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1044.3.1 ID=mRNA_A-nodosum_M_contig1044.3.1|Name=mRNA_A-nodosum_M_contig1044.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2168bp|location=Sequence derived from alignment at A-nodosum_M_contig1044:110599..112766- (Ascophyllum nodosum dioecious)
CATCGACGATGCAACTCCAGCTGGCTTCGCTGCAGTTCTGCGTGGTTTGC
CGAAGCGTGTCCACGTTACACTTGATCATGGAGGAAGGCATGTGTACGTT
GCTGTTTGAGGATGCTCCCGCGTCTGATATCAAGGCCAAAAAGCTGTGCC
GTACGCGTGTTCCAACTATTCAGCCCCTCAAATTAACGTGGATGCTTCCG
AAGTCCTGTTTGAAGCGATTCTCGAGTGAGGCTTTGGAGAACGTCGAGCA
GCTTACGTTCTGGGACAAATTCAACGACGAAGTCAACGATGTTGCATGGC
CATCGGCACTCAAGCGACTCACGTTCGGGCATAGGTTTAATCAGGCAGTC
GACAAGGTCATGTGGCCAGCATTGCTCCAGCAGCTAACATTCGAGGGTTA
CTTTAACCAGCCGATCGACAGAGTCGTATGGCCGGTGTCGCTTCAGAAAC
TCGAGTTCGGGCATGATTTTAACCAGCCGATCGGCAGGGTCGTGTGGCCG
TCGTCGCTCCAGCAGCTAAAGTTCAAGTGTAGCTTCAACCAGCCGATCGA
GGGGGTCGTGTGGCCGGCGTCGCTCCAGAAGCTTGAGTTTGGGGGTTGTT
TCAACCAGCCGATCGGCAGGGTCGTGTGGCCAGCGTCGCTCCAGCATCTC
GATTTAGGGGAAATATTCGATCAGGCAATAGACGGCGTTATGTGGCCGGC
GTCGCTCCGGCAGCTCGAGTTCGGGTGGGCTTTCAATAAGGCGATCAACG
GCGTCATATGGCCGGCGTCGCTCCATCAGCTAAAATTCAAGTATTACTTC
AATCAGCCGATCGACGGAGTCTTATGGCCGGCGTCACTTCAGAAACTCGA
GTTCGGGTATCATTTCAACCAGCCGATCGGGAGGGTCGTGTGGCCGGTGT
CGCTCCAAGAGCTCAAGTTCAGGTATGGTTTCAACCAGCCGATCGAGGGG
GTCGTGTGGCCGGCGTCACTCCAGAAGCTTGAATTTGGGTGTCTTTTCAA
CCAGCCGATCGGCAGGGTCGTGTGGCCGGCATCACTACAGCGGCTTGACT
TCGGGAGTGATTTCAACCAGGCAATCGACAGCGTCTTGTGGCCGGCGTCG
CTCCAGCAACTTAATTTTGGGGAAGATTTTGATCAGGCAATCGACGGGGT
TGTGTGGCCGGCGTCGCTCCAGCAGCTCGTGCTCGGGGTTTATTTCAACC
AGGCGATCGACGGGGTCATGTGGCCGGCTTCCCTCCGGCAACTCAAATTA
GGGACGCATTTTGATCAGGCAATCGACGGCGTTATGTGGCCAGCGTCGCT
CCAGCAGCTCGAGTTCGGGATTTCTTTCAACCAGCCGATTGACGGGGTCG
TATGGCCGGCATCACTCCAGCAGCTGAAGTTCGGGATTTGTTTCAACCAG
CCGATCGACAGGGTCATATGGCCGGCGTCACTCCAGCTGCTCAAGTTCGG
GATTAGTTTCGACCAGCCGATCGGGGGGGTCGTGTGGCCGGCGTCGCTCC
GGCGGCTCGAATTCGGGACTTGTATTAAATAGGCGATCTAAGGGTTCGTT
CGGCCGGCATCGCTTCAGGTGCTCAAGTCCGGGCGCAAGACTTTGACCAA
GCGATCCGACGGGGTTATGTGGCCGGTGTCGATCCAGTAGCAATGTTTTG
GGGATCAATCTAACTAGGGCACTGACGTTGTCTCACGTCCGATGTCACTT
CAGCCGCTCACGGCAGGGACAAAATGCAAACCGGCGATCGACGAGGTTGT
ATTGTCGCCTTCGTTCCAGCGTCTCACGTTCGAGTACTAGTTCAAGCAGG
CGGTAGACGAAGTCACTTGGCCATTGAAGCACGGTATGCTTCATGTTTGT
AAATTGTTTTTTGCTAGTGATTGAGGTGATTCCGAGAGTGGCAATGCTCA
GGAAGGTTTGGGTTTATATAGATGGTGGCCGGATCGTTGGTTGAATGGAA
TTTCATGCGCGTGTACTTCTTGTTTCCTGGTCCGCCTCTGCCTAATGGCT
GGTAATACATCGCACACGAATTCTTCCACTTCTGGCATGCTGGCGTCTAC
ATTCGTTATGGCCCTATCATTATCTTCTTCCAATCGCCAATGGACAGTCA
TCGCTGCGCTCCGCTGGTCGGGAAAATGTCGAAAGGTTGTGATCCGAGAT
AAGGTCGGTACAAGTGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1044:110599..112766-

>mRNA_A-nodosum_M_contig1044.3.1 ID=mRNA_A-nodosum_M_contig1044.3.1|Name=mRNA_A-nodosum_M_contig1044.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at A-nodosum_M_contig1044:110599..112766- (Ascophyllum nodosum dioecious)
ATGCAACTCCAGCTGGCTTCGCTGCAGTTCTGCGTGGTTTGCCGAAGCGT
GTCCACGTTACACTTGATCATGGAGGAAGGCATGTGTACGTTGCTGTTTG
AGGATGCTCCCGCGTCTGATATCAAGGCCAAAAAGCTGTGCCGTACGCGT
GTTCCAACTATTCAGCCCCTCAAATTAACGTGGATGCTTCCGAAGTCCTG
TTTGAAGCGATTCTCGAGTGAGGCTTTGGAGAACGTCGAGCAGCTTACGT
TCTGGGACAAATTCAACGACGAAGTCAACGATGTTGCATGGCCATCGGCA
CTCAAGCGACTCACGTTCGGGCATAGGTTTAATCAGGCAGTCGACAAGGT
CATGTGGCCAGCATTGCTCCAGCAGCTAACATTCGAGGGTTACTTTAACC
AGCCGATCGACAGAGTCGTATGGCCGGTGTCGCTTCAGAAACTCGAGTTC
GGGCATGATTTTAACCAGCCGATCGGCAGGGTCGTGTGGCCGTCGTCGCT
CCAGCAGCTAAAGTTCAAGTGTAGCTTCAACCAGCCGATCGAGGGGGTCG
TGTGGCCGGCGTCGCTCCAGAAGCTTGAGTTTGGGGGTTGTTTCAACCAG
CCGATCGGCAGGGTCGTGTGGCCAGCGTCGCTCCAGCATCTCGATTTAGG
GGAAATATTCGATCAGGCAATAGACGGCGTTATGTGGCCGGCGTCGCTCC
GGCAGCTCGAGTTCGGGTGGGCTTTCAATAAGGCGATCAACGGCGTCATA
TGGCCGGCGTCGCTCCATCAGCTAAAATTCAAGTATTACTTCAATCAGCC
GATCGACGGAGTCTTATGGCCGGCGTCACTTCAGAAACTCGAGTTCGGGT
ATCATTTCAACCAGCCGATCGGGAGGGTCGTGTGGCCGGTGTCGCTCCAA
GAGCTCAAGTTCAGGTATGGTTTCAACCAGCCGATCGAGGGGGTCGTGTG
GCCGGCGTCACTCCAGAAGCTTGAATTTGGGTGTCTTTTCAACCAGCCGA
TCGGCAGGGTCGTGTGGCCGGCATCACTACAGCGGCTTGACTTCGGGAGT
GATTTCAACCAGGCAATCGACAGCGTCTTGTGGCCGGCGTCGCTCCAGCA
ACTTAATTTTGGGGAAGATTTTGATCAGGCAATCGACGGGGTTGTGTGGC
CGGCGTCGCTCCAGCAGCTCGTGCTCGGGGTTTATTTCAACCAGGCGATC
GACGGGGTCATGTGGCCGGCTTCCCTCCGGCAACTCAAATTAGGGACGCA
TTTTGATCAGGCAATCGACGGCGTTATGTGGCCAGCGTCGCTCCAGCAGC
TCGAGTTCGGGATTTCTTTCAACCAGCCGATTGACGGGGTCGTATGGCCG
GCATCACTCCAGCAGCTGAAGTTCGGGATTTGTTTCAACCAGCCGATCGA
CAGGGTCATATGGCCGGCGTCACTCCAGCTGCTCAAGTTCGGGATTAGTT
TCGACCAGCCGATCGGGGGGGTCGTGTGGCCGGCGTCGCTCCGGCGGCTC
GAATTCGGGACTTGTATTAAATAG
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