mRNA_A-nodosum_M_contig10436.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10436.5.1
Unique NamemRNA_A-nodosum_M_contig10436.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A6Q2ZCJ0_ESOLU (Rho-associated protein kinase 2 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2ZCJ0_ESOLU)

HSP 1 Score: 72.4 bits (176), Expect = 3.820e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL   +QD  H+++  + M GGDL   +  + N   P   VRFYTA +V AL +IHAMGF HRDVKP+N+
Sbjct:   72 PWVVQLCCAFQDNRHLYMVMEYMAGGDL---VTLTMNYDMPEKWVRFYTAELVLALDAIHAMGFIHRDVKPDNI 142
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A6Q2Y264_ESOLU (Rho-associated protein kinase 2 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2Y264_ESOLU)

HSP 1 Score: 72.4 bits (176), Expect = 3.820e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL   +QD  H+++  + M GGDL   +  + N   P   VRFYTA +V AL +IHAMGF HRDVKP+N+
Sbjct:  113 PWVVQLCCAFQDNRHLYMVMEYMAGGDL---VTLTMNYDMPEKWVRFYTAELVLALDAIHAMGFIHRDVKPDNI 183
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A6Q2Y7W4_ESOLU (Rho-associated protein kinase 2 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2Y7W4_ESOLU)

HSP 1 Score: 72.4 bits (176), Expect = 3.820e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL   +QD  H+++  + M GGDL   +  + N   P   VRFYTA +V AL +IHAMGF HRDVKP+N+
Sbjct:  139 PWVVQLCCAFQDNRHLYMVMEYMAGGDL---VTLTMNYDMPEKWVRFYTAELVLALDAIHAMGFIHRDVKPDNI 209
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A6Q2WYJ9_ESOLU (Rho-associated protein kinase n=10 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2WYJ9_ESOLU)

HSP 1 Score: 72.4 bits (176), Expect = 3.820e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL   +QD  H+++  + M GGDL   +  + N   P   VRFYTA +V AL +IHAMGF HRDVKP+N+
Sbjct:  136 PWVVQLCCAFQDNRHLYMVMEYMAGGDL---VTLTMNYDMPEKWVRFYTAELVLALDAIHAMGFIHRDVKPDNI 206
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: UPI001CD83B53 (rho-associated protein kinase 2-like isoform X2 n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001CD83B53)

HSP 1 Score: 71.2 bits (173), Expect = 9.750e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL  ++QD SH+++  + M GGDL   +  + N   P    RFYTA +V AL +IH+MGF HRDVKP+N+
Sbjct:  135 PWVVQLCCSFQDDSHLYMVMEFMPGGDL---VTLTMNYDMPEKWARFYTAEVVMALDTIHSMGFIHRDVKPDNM 205
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: UPI001CD82C98 (rho-associated protein kinase 2-like isoform X1 n=2 Tax=Solea senegalensis TaxID=28829 RepID=UPI001CD82C98)

HSP 1 Score: 71.2 bits (173), Expect = 9.760e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P+V QL  ++QD SH+++  + M GGDL   +  + N   P    RFYTA +V AL +IH+MGF HRDVKP+N+
Sbjct:  135 PWVVQLCCSFQDDSHLYMVMEFMPGGDL---VTLTMNYDMPEKWARFYTAEVVMALDTIHSMGFIHRDVKPDNM 205
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: Q4T429_TETNG (Chromosome undetermined SCAF9846, whole genome shotgun sequence (Fragment) n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4T429_TETNG)

HSP 1 Score: 70.9 bits (172), Expect = 1.280e-12
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P++ QLL  +QD  HV++A + + GGDL   L    ++ F  S  +FY A +VEA+ S+H +G+ HRD+KPENV
Sbjct:  156 PWIPQLLYAFQDKEHVYLAMEYLPGGDLMSLLNRYEDQ-FDESMAQFYLAELVEAINSVHQLGYVHRDIKPENV 228
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A8C5BRT0_GADMO (Citron Rho-interacting kinase n=4 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BRT0_GADMO)

HSP 1 Score: 70.9 bits (172), Expect = 1.340e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P++ QL   +QDT HV++A + + GGDL   L    ++ F  S  +FY A +VEA+ S+H +G+ HRDVKPENV
Sbjct:  157 PWIPQLFYAFQDTEHVYLAMEYLPGGDLSSLLIRYEDQ-FDESMAQFYLAELVEAIHSVHQLGYVHRDVKPENV 229
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: A0A8C4ZPF5_GADMO (Citron Rho-interacting kinase n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZPF5_GADMO)

HSP 1 Score: 70.9 bits (172), Expect = 1.340e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P++ QL   +QDT HV++A + + GGDL   L    ++ F  S  +FY A +VEA+ S+H +G+ HRDVKPENV
Sbjct:  153 PWIPQLFYAFQDTEHVYLAMEYLPGGDLSSLLIRYEDQ-FDESMAQFYLAELVEAIHSVHQLGYVHRDVKPENV 225
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Match: UPI0011B6F052 (citron Rho-interacting kinase-like isoform X1 n=3 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B6F052)

HSP 1 Score: 70.9 bits (172), Expect = 1.340e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTANIVEALTSIHAMGFAHRDVKPENV 222
            P++ QL   +QDT HV++A + + GGDL   L    ++ F  S  +FY A +VEA+ S+H +G+ HRDVKPENV
Sbjct:  157 PWIPQLFYAFQDTEHVYLAMEYLPGGDLSSLLIRYEDQ-FDESMAQFYLAELVEAIHSVHQLGYVHRDVKPENV 229
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10436.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6Q2ZCJ0_ESOLU3.820e-1348.65Rho-associated protein kinase 2 n=2 Tax=Esox luciu... [more]
A0A6Q2Y264_ESOLU3.820e-1348.65Rho-associated protein kinase 2 n=1 Tax=Esox luciu... [more]
A0A6Q2Y7W4_ESOLU3.820e-1348.65Rho-associated protein kinase 2 n=1 Tax=Esox luciu... [more]
A0A6Q2WYJ9_ESOLU3.820e-1348.65Rho-associated protein kinase n=10 Tax=Esox lucius... [more]
UPI001CD83B539.750e-1347.30rho-associated protein kinase 2-like isoform X2 n=... [more]
UPI001CD82C989.760e-1347.30rho-associated protein kinase 2-like isoform X1 n=... [more]
Q4T429_TETNG1.280e-1244.59Chromosome undetermined SCAF9846, whole genome sho... [more]
A0A8C5BRT0_GADMO1.340e-1245.95Citron Rho-interacting kinase n=4 Tax=Gadus morhua... [more]
A0A8C4ZPF5_GADMO1.340e-1245.95Citron Rho-interacting kinase n=1 Tax=Gadus morhua... [more]
UPI0011B6F0521.340e-1245.95citron Rho-interacting kinase-like isoform X1 n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10436contigA-nodosum_M_contig10436:4913..5495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8010.XP_010887783.1
PFAMsPkinase,Rho_Binding
Model size224
Max annot lvl33208|Metazoa
KEGG koko:K17388
KEGG Pathwayko04022,ko04024,ko04062,ko04071,ko04270,ko04310,ko04360,ko04510,ko04530,ko04611,ko04670,ko04810,ko04921,ko05130,ko05131,ko05132,ko05200,ko05205,map04022,map04024,map04062,map04071,map04270,map04310,map04360,map04510,map04530,map04611,map04670,map04810,map04921,map05130,map05131,map05132,map05200,map05205
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.27e-14
EggNOG OGsCOG0515@1|root,KOG0612@2759|Eukaryota,38BFH@33154|Opisthokonta,3BXP5@33208|Metazoa,3DECC@33213|Bilateria,48J83@7711|Chordata,49ESI@7742|Vertebrata,4A743@7898|Actinopterygii
EC2.7.11.1
DescriptionRho-associated, coiled-coil containing protein kinase
Cds size222
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.819011-CDS-A-nodosum_M_contig10436:4912..50271680866418.819011-CDS-A-nodosum_M_contig10436:4912..5027Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 4913..5027 +
1680866418.8328767-CDS-A-nodosum_M_contig10436:5386..54931680866418.8328767-CDS-A-nodosum_M_contig10436:5386..5493Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 5387..5493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10436.5.1prot_A-nodosum_M_contig10436.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10436 4913..5493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10436.5.1

>prot_A-nodosum_M_contig10436.5.1 ID=prot_A-nodosum_M_contig10436.5.1|Name=mRNA_A-nodosum_M_contig10436.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
PFVAQLLETWQDTSHVFVATKLMLGGDLEGRLKTSPNKGFPASHVRFYTA
NIVEALTSIHAMGFAHRDVKPENV
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mRNA from alignment at A-nodosum_M_contig10436:4913..5495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10436.5.1 ID=mRNA_A-nodosum_M_contig10436.5.1|Name=mRNA_A-nodosum_M_contig10436.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=583bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:4913..5495+ (Ascophyllum nodosum dioecious)
CCGTTTGTGGCGCAGCTGCTGGAGACATGGCAAGATACAAGCCATGTCTT
CGTCGCCACCAAGCTCATGCTTGGGGGTGATCTAGAGGGGAGGCTTAAAA
CCTCCCCGAACAAGGGTGAGCCCGTCCTGCACCCCAAGGAACCAGTCATA
CAGTGTTACTGGTACTATATACTGTACTTAAAAGTTGTCTTGAGAAGTAC
CGTTGACCTATTTATAGTGTAATCCTGTGTGTGTTTGTACTTGTAAATTG
TATTAGACTGTACTCGTACTCGTACTCGTATAATTTAGTACTGCAGTTTG
TTAATATTCATATTCATATTCATATTCATATTAATAGTGAGACATTCCAC
GCGTGTCGCGAGGGCCTGGCCTGTACTTGCTCTGAAAATACCTAACCCTC
GCGATGACCGATGACCGACGACCGACTTTGACTGACCCCGCGATGCCGCG
ATACCGTGTGATCATTCCCAACAGGATTTCCCGCCTCGCACGTGCGGTTC
TATACCGCGAACATCGTGGAAGCTCTCACGAGCATCCACGCTATGGGGTT
CGCCCATAGAGACGTGAAGCCGGAAAACGTTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10436:4913..5495+

>mRNA_A-nodosum_M_contig10436.5.1 ID=mRNA_A-nodosum_M_contig10436.5.1|Name=mRNA_A-nodosum_M_contig10436.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:4913..5495+ (Ascophyllum nodosum dioecious)
CCGTTTGTGGCGCAGCTGCTGGAGACATGGCAAGATACAAGCCATGTCTT
CGTCGCCACCAAGCTCATGCTTGGGGGTGATCTAGAGGGGAGGCTTAAAA
CCTCCCCGAACAAGGGATTTCCCGCCTCGCACGTGCGGTTCTATACCGCG
AACATCGTGGAAGCTCTCACGAGCATCCACGCTATGGGGTTCGCCCATAG
AGACGTGAAGCCGGAAAACGTT
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