mRNA_A-nodosum_M_contig10435.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10435.1.1
Unique NamemRNA_A-nodosum_M_contig10435.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 60.1 bits (144), Expect = 4.990e-9
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 KADESHTPEEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYK 171
            K+    TP+E + M + PY  AVG+L+Y+A M RPDIA+ A  + RF  NPG+ H+K
Sbjct:  368 KSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWK 424
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BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2P6C4_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2P6C4_ARAVE)

HSP 1 Score: 55.5 bits (132), Expect = 3.250e-8
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E K+M KFPYRE +G+L+++A   RP+I F    + ++  NPG+ H+K A+
Sbjct:   17 QERKFMEKFPYRELIGSLMFLASQTRPNIQFAVTFLSQYCSNPGLNHWKAAL 68
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BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2Q2G9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q2G9_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 4.380e-8
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+L+++A   RPDI F    + ++  NPG+ H+K A+
Sbjct:   28 QEKKFMEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 79
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2KSY9_ARAVE (Copia protein (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KSY9_ARAVE)

HSP 1 Score: 57.4 bits (137), Expect = 4.490e-8
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+LI++A   RPDI F    + ++  NPG+ H+K A+
Sbjct:  684 QEKKFMEKFPYRQLIGSLIFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 735
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2WQ03_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WQ03_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-7
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+L+++A   RPDI F    + ++  NPG+ H+K A+
Sbjct:  396 QEKKFMEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 447
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2LHN7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LHN7_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-7
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+L+++A   RPDI F    + ++  NPG+ H+K A+
Sbjct:  838 QEKKFMEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 889
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2D7A5_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2D7A5_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-7
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+L+++A   RPDI F    + ++  NPG+ H+K A+
Sbjct:  683 QEKKFMEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 734
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: A0A4Y2LAB9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAB9_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-7
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 EEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYKNAM 180
            +E+K+M KFPYR+ +G+L+++A   RPDI F    + ++  NPG+ H+K A+
Sbjct: 1120 QEKKFMEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAAL 1171
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 54.7 bits (130), Expect = 1.720e-7
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   19 TPEEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYK 171
            T +E + M + PY+EAVGAL+Y++   RPDI++    V +F  NPGV H+K
Sbjct:    5 TDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWK 55
[Close]
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 54.7 bits (130), Expect = 3.120e-7
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   28 EEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKNPGVVHYK 171
            E++ M   PY+EAVGAL+Y++   RPDI++    V +F +NPG+ H+K
Sbjct:   28 EKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWK 75
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10435.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E2LZP6_MONPE4.990e-947.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2P6C4_ARAVE3.250e-842.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2Q2G9_ARAVE4.380e-842.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2KSY9_ARAVE4.490e-844.23Copia protein (Fragment) n=1 Tax=Araneus ventricos... [more]
A0A4Y2WQ03_ARAVE1.140e-742.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LHN7_ARAVE1.150e-742.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2D7A5_ARAVE1.150e-742.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LAB9_ARAVE1.160e-742.31Retrovirus-related Pol polyprotein from transposon... [more]
UPI001E1BB9B01.720e-747.06secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BCD313.120e-745.83secreted RxLR effector protein 161-like n=1 Tax=Da... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10435contigA-nodosum_M_contig10435:11351..11536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65672.G4TYN6
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size186
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.26e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size186
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.508347-CDS-A-nodosum_M_contig10435:11350..115361680866418.508347-CDS-A-nodosum_M_contig10435:11350..11536Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10435 11351..11536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10435.1.1prot_A-nodosum_M_contig10435.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10435 11351..11536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10435.1.1

>prot_A-nodosum_M_contig10435.1.1 ID=prot_A-nodosum_M_contig10435.1.1|Name=mRNA_A-nodosum_M_contig10435.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
KADESHTPEEEKYMLKFPYREAVGALIYMAKMARPDIAFVARAVVRFWKN
PGVVHYKNAMM*
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mRNA from alignment at A-nodosum_M_contig10435:11351..11536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10435.1.1 ID=mRNA_A-nodosum_M_contig10435.1.1|Name=mRNA_A-nodosum_M_contig10435.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig10435:11351..11536- (Ascophyllum nodosum dioecious)
AAAGCGGATGAATCGCACACCCCGGAAGAGGAGAAATATATGTTAAAGTT
CCCGTACCGGGAGGCAGTGGGGGCACTCATTTATATGGCAAAGATGGCAC
GGCCGGATATTGCGTTCGTGGCACGCGCTGTGGTCAGGTTCTGGAAAAAC
CCTGGAGTGGTGCATTACAAAAATGCGATGATGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10435:11351..11536-

>mRNA_A-nodosum_M_contig10435.1.1 ID=mRNA_A-nodosum_M_contig10435.1.1|Name=mRNA_A-nodosum_M_contig10435.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig10435:11351..11536- (Ascophyllum nodosum dioecious)
AAAGCGGATGAATCGCACACCCCGGAAGAGGAGAAATATATGTTAAAGTT
CCCGTACCGGGAGGCAGTGGGGGCACTCATTTATATGGCAAAGATGGCAC
GGCCGGATATTGCGTTCGTGGCACGCGCTGTGGTCAGGTTCTGGAAAAAC
CCTGGAGTGGTGCATTACAAAAATGCGATGATGTAG
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