mRNA_A-nodosum_M_contig1043.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1043.5.1
Unique NamemRNA_A-nodosum_M_contig1043.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 140 bits (352), Expect = 3.380e-37
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1
Query:    1 ECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            ECFPNPVFP DDGLELI FEG+CLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGL+LGETIT+RTLHQ
Sbjct:  559 ECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQ 627          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 133 bits (334), Expect = 5.390e-35
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 1
Query:    1 ECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            +C+P+PV+PDDDGL+LI F GSCLT+EGEINKLAVNVAFGRQMLGIHYRFDGIQGL+LGETIT+RTLHQ
Sbjct:  440 DCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQ 508          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.510e-22
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 ECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            +CF +P  PDD+GL L+ F G CLT+EGEINKLAVNVAFGR M G+H+R D  QGL+LGE   +R L Q
Sbjct:  498 DCFRDPKVPDDEGLTLLDFTGDCLTFEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRILQQ 566          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.810e-21
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    4 CFPNPVFPDDDGLELIAFEG----SCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            CF +PVFPDD+GL L+ + G    +CLT+EGEINKLAVNVA GR MLG+H+R D   GL+LGET  +R L Q
Sbjct:  506 CFNDPVFPDDEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQ 577          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 91.7 bits (226), Expect = 5.180e-20
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 ECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            ECF +PV P DDGL L+ F+G CLT+EGEINK A NVA GR  +G+H+R D  +GL+LGET+ +R L Q
Sbjct:  487 ECFNDPVVPSDDGLTLLPFDG-CLTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQ 554          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: A0A4Y7RBA7_9FIRM (PAP2 superfamily protein n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RBA7_9FIRM)

HSP 1 Score: 79.7 bits (195), Expect = 8.110e-16
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   10 PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTL 201
            PNPV    DGL L+ +EG  LT  GE+NKLAVN+A GR   GIH+R DG +GL LGET+ IR L
Sbjct:  498 PNPVVAGPDGLSLLPYEGPPLTVGGELNKLAVNIAMGRDFAGIHWRTDGSEGLKLGETVAIRIL 561          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: A0A2N2EFB6_9FIRM (Phosphoesterase n=1 Tax=Firmicutes bacterium HGW-Firmicutes-1 TaxID=2013770 RepID=A0A2N2EFB6_9FIRM)

HSP 1 Score: 78.2 bits (191), Expect = 2.800e-15
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   10 PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTL 201
            P+PV P  +GL L AF+G  LT  GE+NKLA N++ GR M G+H+R DG++G+ LGET+ IR L
Sbjct:  439 PDPVVPSSNGLSLSAFKGKPLTIGGELNKLASNISLGRDMSGVHWRSDGMEGMKLGETVAIRLL 502          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: A0A1H9CXN4_9BACI (Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein n=2 Tax=Piscibacillus halophilus TaxID=571933 RepID=A0A1H9CXN4_9BACI)

HSP 1 Score: 74.3 bits (181), Expect = 5.640e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   10 PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITI 192
            PNPV    DG  L+ + G+ LT  GE+NKLA N+A GR   G+H+RFDG++GL LGE + I
Sbjct:   89 PNPVEASSDGTSLLPYSGTSLTIGGELNKLATNIAHGRDTAGVHWRFDGVEGLKLGERVAI 149          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: S4XN83_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4XN83_SORCE)

HSP 1 Score: 77.0 bits (188), Expect = 7.140e-15
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   10 PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 207
            PNPV   DDGL L+ + G  LT  GE+NKLA N+A GR   G+HYR DG+ G++LGE I +  L +
Sbjct:  437 PNPVVASDDGLSLVPYTGPALTVGGELNKLATNIAHGRDGGGVHYRSDGVAGMLLGEAIALSILSE 502          
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Match: UPI001BC9DC0A (vanadium-dependent haloperoxidase n=1 Tax=Bacillus sp. FJAT-50051 TaxID=2833578 RepID=UPI001BC9DC0A)

HSP 1 Score: 75.9 bits (185), Expect = 1.820e-14
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   10 PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITI 192
            PNPV    DGL LI F+G  LT  GE+NKLA N+A GR   G+H+R DGI+GL LGE + I
Sbjct:  432 PNPVAASSDGLSLIPFQGPSLTIGGELNKLASNIALGRDAAGVHWRSDGIEGLKLGEAVAI 492          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1043.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI3.380e-3792.75Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO5.390e-3585.51Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE6.510e-2262.32Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE5.810e-2161.11Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA5.180e-2059.42Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
A0A4Y7RBA7_9FIRM8.110e-1659.38PAP2 superfamily protein n=2 Tax=Pelotomaculum Tax... [more]
A0A2N2EFB6_9FIRM2.800e-1554.69Phosphoesterase n=1 Tax=Firmicutes bacterium HGW-F... [more]
A0A1H9CXN4_9BACI5.640e-1552.46Glyoxalase/Bleomycin resistance protein/Dioxygenas... [more]
S4XN83_SORCE7.140e-1551.52Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]
UPI001BC9DC0A1.820e-1457.38vanadium-dependent haloperoxidase n=1 Tax=Bacillus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1043contigA-nodosum_M_contig1043:136173..136796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog767817.Desgi_2766
PFAMsPAP2
Model size208
Max annot lvl1239|Firmicutes
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.57e-16
EggNOG OGsCOG0671@1|root,COG0671@2|Bacteria,1USD9@1239|Firmicutes
DescriptionPAP2 superfamily
Cds size207
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.1699557-CDS-A-nodosum_M_contig1043:136173..1362581680866418.1699557-CDS-A-nodosum_M_contig1043:136173..136258Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1043 136174..136258 -
1680866418.2381878-CDS-A-nodosum_M_contig1043:136674..1367961680866418.2381878-CDS-A-nodosum_M_contig1043:136674..136796Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1043 136675..136796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1043.5.1prot_A-nodosum_M_contig1043.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1043 136174..136796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1043.5.1

>prot_A-nodosum_M_contig1043.5.1 ID=prot_A-nodosum_M_contig1043.5.1|Name=mRNA_A-nodosum_M_contig1043.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=69bp
ECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRF
DGIQGLILGETITIRTLHQ
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mRNA from alignment at A-nodosum_M_contig1043:136173..136796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1043.5.1 ID=mRNA_A-nodosum_M_contig1043.5.1|Name=mRNA_A-nodosum_M_contig1043.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at A-nodosum_M_contig1043:136173..136796- (Ascophyllum nodosum dioecious)
GAGTGCTTTCCCAACCCCGTGTTCCCAGACGATGACGGCCTGGAACTAAT CGCCTTCGAAGGGAGTTGCCTCACGTATGAGGGAGAGATCAACAAACTCG CGGTCAACGTTGCATTCGGGAGGTAAAAACTAGGGGGGGGTTTGCGAGCT TCGTACAAAACTGTTTAAACTATGTTATTCTAAGTTAAACCACGAGGTAT ATCATACAAAGGCATGCACTGTAGCATGCACAACACACAAACGGGAATGT CGGCTAGCATATAAAATATACGTTATAGTCTATCTACATAATCAGCGTGC TCGTAAGTACTAAATAAATGAAGCCATAGTTGATATTATTTTCATTCACT GTGCTGGTGTAACCTCCGACAAGTTGATGGACGCGCAGTAAATCATTCCA GGTGGAAAGAGCATATACAACACATCATATGACTCCGTATTGACTCAGCA GATAGTTGATGAAATCGTTAGCGTGGTCATGATTTAGATGTTTGACTGCC AGATGTCACGCTGTTTCCGTTTTGTTTGGTGATTGCAGGCAGATGCTGGG CATCCACTATCGGTTTGACGGCATTCAAGGCCTGATCCTCGGAGAGACAA TCACTATACGAACACTTCACCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1043:136173..136796-

>mRNA_A-nodosum_M_contig1043.5.1 ID=mRNA_A-nodosum_M_contig1043.5.1|Name=mRNA_A-nodosum_M_contig1043.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig1043:136173..136796- (Ascophyllum nodosum dioecious)
GAGTGCTTTCCCAACCCCGTGTTCCCAGACGATGACGGCCTGGAACTAAT
CGCCTTCGAAGGGAGTTGCCTCACGTATGAGGGAGAGATCAACAAACTCG
CGGTCAACGTTGCATTCGGGAGGCAGATGCTGGGCATCCACTATCGGTTT
GACGGCATTCAAGGCCTGATCCTCGGAGAGACAATCACTATACGAACACT
TCACCAG
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