mRNA_A-nodosum_M_contig1041.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1041.8.1
Unique NamemRNA_A-nodosum_M_contig1041.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.710e-58
Identity = 105/167 (62.87%), Postives = 123/167 (73.65%), Query Frame = 2
Query:    5 GVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            G GPE SV QPEE LLN EGK+RYQ+I G+ MYLAQV RY I++  +Q AR MS P K HMGAAK LLRYL+GS DFSITYK+GGF LTA  +A  G N DNGKS  SYI+M+S  P S K  +Q LTA ST+E +LVA+ L MKE +FC+NMM ELGF   F+S P
Sbjct:  536 GFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAP 702          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.070e-57
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            PG G E S  QPE+ LL+++  R+YQ I G+ MY+AQV RY I++   QLAR M+KP K HM AAK  LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ ML+N P+S +  +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F  +P
Sbjct:  194 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 361          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.640e-55
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            PG+GP PS  QPEE LLN+E  RRYQ I G  +YL+Q+ RY I++  +QLAR M+KP K HMGAAK+  RYLAG+T F I YK+GGFKLTAF D+ WG N DNGKST S++ ML + P++ K  +Q LT QST+E +LVAA L +KE VFCSN++ ELGF +    VP
Sbjct:  477 PGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVP 644          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 8.520e-55
Identity = 98/168 (58.33%), Postives = 121/168 (72.02%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            PG G E S  QPE+ LL+++  R+YQ I G+ MY+AQV RY I++   QLAR M+KP K HM AAK  LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ ML+N P+S +  +QGLTA ST+E +LVA+ L MKE VFCSNMM ELG  + F  +P
Sbjct:  415 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLP 582          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 9.000e-55
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            PG G E S  QPE+ LL+++  R+YQ I G+ MY+AQV RY I++   QLAR M+KP K HM AAK  LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ ML+N P+S +  +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F  +P
Sbjct:  754 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 921          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.960e-52
Identity = 96/168 (57.14%), Postives = 120/168 (71.43%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            PG G E S  QPE+ LL+++  R+YQ I G+ MY+AQV RY I++   QLAR M+KP K HM AAK  LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ +L+N P+S +  +QGLTA ST+E +LVA+ L M E VF SNMM ELGF + F  +P
Sbjct: 1423 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLP 1590          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.730e-50
Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 2
Query:   83 ITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            I G+ MY+AQV RY I++   QLAR M+KP K HM AAK  LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ ML+N P+S +  +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F  +P
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 238          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.850e-48
Identity = 82/136 (60.29%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   98 MYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            MY+AQV RY I++    LAR M+KP K H   AKQ LRYLAG+ DFSITYK+GGFKL  F D+ W  N DNGKST SY+ ML+N P+S +  +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F  +P
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 136          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.100e-48
Identity = 89/142 (62.68%), Postives = 105/142 (73.94%), Query Frame = 2
Query:   80 SITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
            +I G+ +YLAQ+ RY I++  +QLAR MS P K HMGAAK LLRYL+GS DFSITYK+GGF LTA  DA WG N DN KS  SYI+M+S  P+S K  +Q LTA STLE +LVAA L MKET+FC+NMM ELGF   F S P
Sbjct:  474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAP 615          
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.570e-45
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query:    2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETV 448
            PG G E S  QPE+ LL +E  RRYQ I G  MY+AQV RY I++   QLAR M KP K HM AAK  LRY+AG+T+F ITYK  GFKL  F D+ W  N DNGKST  Y+ ML N P+S K  IQG TA ST+E +L+A+ L MKE V
Sbjct:  285 PGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMKEAV 433          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.710e-5862.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE1.070e-5758.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE1.640e-5558.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE8.520e-5558.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE9.000e-5558.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE5.960e-5257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNV2_9PHAE1.730e-5060.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK0_9PHAE2.850e-4860.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE4.100e-4862.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPN4_9PHAE1.570e-4557.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1041contigA-nodosum_M_contig1041:89404..90015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.6164083-CDS-A-nodosum_M_contig1041:89403..897271680866413.6164083-CDS-A-nodosum_M_contig1041:89403..89727Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 89404..89727 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.6316426-UTR-A-nodosum_M_contig1041:89727..900151680866413.6316426-UTR-A-nodosum_M_contig1041:89727..90015Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1041 89728..90015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1041.8.1prot_A-nodosum_M_contig1041.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1041 89404..89727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1041.8.1

>prot_A-nodosum_M_contig1041.8.1 ID=prot_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
MGSKPRQREVYMIIHHNAFQRPDQLQGGHSRINCTIYIGDEIGGGGAHHE
GNSLLQQHDVGARLQGRVQQRAAFIDKTSTLHIAGNRTYSPRAKHIVLRY
FFEQELVE
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mRNA from alignment at A-nodosum_M_contig1041:89404..90015-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1041.8.1 ID=mRNA_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:89404..90015- (Ascophyllum nodosum dioecious)
CCCAGGAGTGGGACCTGAACCGTCCGTAGATCAACCAGAGGAGAACCTCT TGAACAAAGAAGGCAAGCGGAGATACCAATCAATCACGGGTGCGGCTATG TACCTTGCGCAGGTCTGCCGCTACGGCATCCTCTTTACCATCAACCAGTT GGCGAGGGTAATGTCCAAGCCATTTAAGGCACACATGGGGGCGGCCAAGC AGCTATTACGCTACTTGGCCGGGTCTACAGATTTCTCAATCACCTACAAG CAAGGAGGTTTCAAACTCACGGCCTTTTTCGACGCAAAATGGGGAGCAAA CCTCGACAACGGGAAGTCTACATGATCATACATCATAATGCTTTCCAACG GCCCGATCAGCTGCAAGGTGGACATTCAAGGATTAACTGCACAATCTACA TTGGAGACGAAATTGGTGGCGGCGGTGCTCACCATGAAGGAAACAGTCTT CTGCAGCAACATGATGTTGGAGCTAGGCTTCAAGGAAGGGTTCAACAGCG TGCCGCCTTCATCGACAAGACATCGACACTTCACATCGCCGGCAATCGCA CATACAGCCCCCGCGCGAAGCACATCGTGCTGAGGTACTTCTTTGAGCAG GAATTAGTGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1041:89404..90015-

>mRNA_A-nodosum_M_contig1041.8.1 ID=mRNA_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:89404..90015- (Ascophyllum nodosum dioecious)
ATGGGGAGCAAACCTCGACAACGGGAAGTCTACATGATCATACATCATAA
TGCTTTCCAACGGCCCGATCAGCTGCAAGGTGGACATTCAAGGATTAACT
GCACAATCTACATTGGAGACGAAATTGGTGGCGGCGGTGCTCACCATGAA
GGAAACAGTCTTCTGCAGCAACATGATGTTGGAGCTAGGCTTCAAGGAAG
GGTTCAACAGCGTGCCGCCTTCATCGACAAGACATCGACACTTCACATCG
CCGGCAATCGCACATACAGCCCCCGCGCGAAGCACATCGTGCTGAGGTAC
TTCTTTGAGCAGGAATTAGTGGAG
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