mRNA_A-nodosum_M_contig1041.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.710e-58 Identity = 105/167 (62.87%), Postives = 123/167 (73.65%), Query Frame = 2
Query: 5 GVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
G GPE SV QPEE LLN EGK+RYQ+I G+ MYLAQV RY I++ +Q AR MS P K HMGAAK LLRYL+GS DFSITYK+GGF LTA +A G N DNGKS SYI+M+S P S K +Q LTA ST+E +LVA+ L MKE +FC+NMM ELGF F+S P
Sbjct: 536 GFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAP 702
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.070e-57 Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
PG G E S QPE+ LL+++ R+YQ I G+ MY+AQV RY I++ QLAR M+KP K HM AAK LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ ML+N P+S + +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F +P
Sbjct: 194 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 361
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.640e-55 Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
PG+GP PS QPEE LLN+E RRYQ I G +YL+Q+ RY I++ +QLAR M+KP K HMGAAK+ RYLAG+T F I YK+GGFKLTAF D+ WG N DNGKST S++ ML + P++ K +Q LT QST+E +LVAA L +KE VFCSN++ ELGF + VP
Sbjct: 477 PGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVP 644
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 194 bits (492), Expect = 8.520e-55 Identity = 98/168 (58.33%), Postives = 121/168 (72.02%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
PG G E S QPE+ LL+++ R+YQ I G+ MY+AQV RY I++ QLAR M+KP K HM AAK LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ ML+N P+S + +QGLTA ST+E +LVA+ L MKE VFCSNMM ELG + F +P
Sbjct: 415 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLP 582
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 197 bits (500), Expect = 9.000e-55 Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
PG G E S QPE+ LL+++ R+YQ I G+ MY+AQV RY I++ QLAR M+KP K HM AAK LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ ML+N P+S + +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F +P
Sbjct: 754 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 921
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 5.960e-52 Identity = 96/168 (57.14%), Postives = 120/168 (71.43%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
PG G E S QPE+ LL+++ R+YQ I G+ MY+AQV RY I++ QLAR M+KP K HM AAK LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ +L+N P+S + +QGLTA ST+E +LVA+ L M E VF SNMM ELGF + F +P
Sbjct: 1423 PGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLP 1590
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.730e-50 Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 2
Query: 83 ITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
I G+ MY+AQV RY I++ QLAR M+KP K HM AAK LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ ML+N P+S + +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F +P
Sbjct: 98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 238
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.850e-48 Identity = 82/136 (60.29%), Postives = 99/136 (72.79%), Query Frame = 2
Query: 98 MYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
MY+AQV RY I++ LAR M+KP K H AKQ LRYLAG+ DFSITYK+GGFKL F D+ W N DNGKST SY+ ML+N P+S + +QGLTA ST+E +LVA+ L MKE VFCSNMM ELGF + F +P
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLP 136
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 178 bits (451), Expect = 4.100e-48 Identity = 89/142 (62.68%), Postives = 105/142 (73.94%), Query Frame = 2
Query: 80 SITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETVFCSNMMLELGFKEGFNSVP 505
+I G+ +YLAQ+ RY I++ +QLAR MS P K HMGAAK LLRYL+GS DFSITYK+GGF LTA DA WG N DN KS SYI+M+S P+S K +Q LTA STLE +LVAA L MKET+FC+NMM ELGF F S P
Sbjct: 474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAP 615
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 165 bits (417), Expect = 1.570e-45 Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query: 2 PGVGPEPSVDQPEENLLNKEGKRRYQSITGAAMYLAQVCRYGILFTINQLARVMSKPFKAHMGAAKQLLRYLAGSTDFSITYKQGGFKLTAFFDAKWGANLDNGKST*SYIIMLSNGPISCKVDIQGLTAQSTLETKLVAAVLTMKETV 448
PG G E S QPE+ LL +E RRYQ I G MY+AQV RY I++ QLAR M KP K HM AAK LRY+AG+T+F ITYK GFKL F D+ W N DNGKST Y+ ML N P+S K IQG TA ST+E +L+A+ L MKE V
Sbjct: 285 PGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMKEAV 433 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1041.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1041.8.1 >prot_A-nodosum_M_contig1041.8.1 ID=prot_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp MGSKPRQREVYMIIHHNAFQRPDQLQGGHSRINCTIYIGDEIGGGGAHHEback to top mRNA from alignment at A-nodosum_M_contig1041:89404..90015- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1041.8.1 ID=mRNA_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:89404..90015- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1041:89404..90015- >mRNA_A-nodosum_M_contig1041.8.1 ID=mRNA_A-nodosum_M_contig1041.8.1|Name=mRNA_A-nodosum_M_contig1041.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:89404..90015- (Ascophyllum nodosum dioecious)back to top |