mRNA_A-nodosum_M_contig10400.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10400.1.1
Unique NamemRNA_A-nodosum_M_contig10400.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10400contigA-nodosum_M_contig10400:5854..6238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.5747566-CDS-A-nodosum_M_contig10400:5853..59491680866413.5747566-CDS-A-nodosum_M_contig10400:5853..5949Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10400 5854..5949 -
1680866413.5836847-CDS-A-nodosum_M_contig10400:6157..62381680866413.5836847-CDS-A-nodosum_M_contig10400:6157..6238Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10400 6158..6238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10400.1.1prot_A-nodosum_M_contig10400.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10400 5854..6238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10400.1.1

>prot_A-nodosum_M_contig10400.1.1 ID=prot_A-nodosum_M_contig10400.1.1|Name=mRNA_A-nodosum_M_contig10400.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=59bp
MSAAHGCFAMSFIRRSTACAQHFMPVNLTMGTGARGSSAFLHTRHPPSLH
PCRGPCTA*
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mRNA from alignment at A-nodosum_M_contig10400:5854..6238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10400.1.1 ID=mRNA_A-nodosum_M_contig10400.1.1|Name=mRNA_A-nodosum_M_contig10400.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=385bp|location=Sequence derived from alignment at A-nodosum_M_contig10400:5854..6238- (Ascophyllum nodosum dioecious)
ATGTCCGCAGCCCACGGCTGCTTCGCGATGTCCTTCATCAGGAGGTCGAC
TGCGTGTGCGCAACACTTCATGCCTGTCAACCTGCACAAGAGCAACGGCG
GGGGGTAGACAAACACCGCGCGTCGAGATTAGAACTGCTGTACATGCTTA
AAGCTTAAAAGCGTAAAGCGGCAGAGGGTGCAGTCAACGTGTCTATGCAG
ACAGACAAATCACAACGCAAAATATAACGCAAACCAGACAGCAATGCACA
GATCAAAGAGGAACGAAAAAGAGAGAATCGGTTGATCGCCTTACCATGGG
AACAGGCGCTCGAGGATCTTCAGCATTCCTGCACACGCGCCATCCGCCAT
CACTACATCCGTGTCGCGGTCCATGTACGGCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10400:5854..6238-

>mRNA_A-nodosum_M_contig10400.1.1 ID=mRNA_A-nodosum_M_contig10400.1.1|Name=mRNA_A-nodosum_M_contig10400.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig10400:5854..6238- (Ascophyllum nodosum dioecious)
ATGTCCGCAGCCCACGGCTGCTTCGCGATGTCCTTCATCAGGAGGTCGAC
TGCGTGTGCGCAACACTTCATGCCTGTCAACCTTACCATGGGAACAGGCG
CTCGAGGATCTTCAGCATTCCTGCACACGCGCCATCCGCCATCACTACAT
CCGTGTCGCGGTCCATGTACGGCTTGA
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