mRNA_A-nodosum_M_contig104.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig104.8.1
Unique NamemRNA_A-nodosum_M_contig104.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig104.8.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.340e-6
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 FFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPYADSDHNIVCARVRL 183
            +F  PKG    TF  +    +  +D+I+ RQ +R+ VRNV+V L  + DSDHN+V     L
Sbjct:  128 YFRTPKGGVQHTFQSSNKGKKYHLDFILMRQTNRRFVRNVSVKLVDFKDSDHNLVLTTAML 188
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J5Z5_9PHAE6.340e-639.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:154978..155234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.7440124-CDS-A-nodosum_M_contig104:154979..1552341680866408.7440124-CDS-A-nodosum_M_contig104:154979..155234Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 154980..155234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.8.1prot_A-nodosum_M_contig104.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig104 154980..155234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig104.8.1

>prot_A-nodosum_M_contig104.8.1 ID=prot_A-nodosum_M_contig104.8.1|Name=mRNA_A-nodosum_M_contig104.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
FFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPYADS
DHNIVCARVRLPGRFARNRKQRAPTGRKSIDRRAI
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mRNA from alignment at A-nodosum_M_contig104:154978..155234-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig104.8.1 ID=mRNA_A-nodosum_M_contig104.8.1|Name=mRNA_A-nodosum_M_contig104.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=257bp|location=Sequence derived from alignment at A-nodosum_M_contig104:154978..155234- (Ascophyllum nodosum dioecious)
TTCTTCTCCGTCCCCAAGGGATGCACGTCTCGTACATTCAACGGTACCCG
GCCCGCGGATAGGAAACGTATTGACTATATAATCACGCGACAACCACATC
GCAAGCTTGTCCGAAATGTCACTGTTCACTTGCAACCGTATGCGGATTCT
GACCACAATATCGTGTGCGCAAGAGTTCGCCTCCCAGGGAGATTTGCTCG
TAATCGAAAACAGCGAGCCCCCACAGGGCGCAAGAGTATTGACAGACGAG
CAATCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig104:154978..155234-

>mRNA_A-nodosum_M_contig104.8.1 ID=mRNA_A-nodosum_M_contig104.8.1|Name=mRNA_A-nodosum_M_contig104.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig104:154978..155234- (Ascophyllum nodosum dioecious)
TTCTTCTCCGTCCCCAAGGGATGCACGTCTCGTACATTCAACGGTACCCG
GCCCGCGGATAGGAAACGTATTGACTATATAATCACGCGACAACCACATC
GCAAGCTTGTCCGAAATGTCACTGTTCACTTGCAACCGTATGCGGATTCT
GACCACAATATCGTGTGCGCAAGAGTTCGCCTCCCAGGGAGATTTGCTCG
TAATCGAAAACAGCGAGCCCCCACAGGGCGCAAGAGTATTGACAGACGAG
CAATC
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