mRNA_A-nodosum_M_contig104.51.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig104.51.1
Unique NamemRNA_A-nodosum_M_contig104.51.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:498599..499155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size305
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006760.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.4768524-CDS-A-nodosum_M_contig104:498598..4986781680866408.4768524-CDS-A-nodosum_M_contig104:498598..498678Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 498599..498678 +
1680866408.4870975-CDS-A-nodosum_M_contig104:498930..4990541680866408.4870975-CDS-A-nodosum_M_contig104:498930..499054Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 498931..499054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.4950156-UTR-A-nodosum_M_contig104:499054..4991551680866408.4950156-UTR-A-nodosum_M_contig104:499054..499155Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig104 499055..499155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.51.1prot_A-nodosum_M_contig104.51.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig104 498599..499054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig104.51.1

>prot_A-nodosum_M_contig104.51.1 ID=prot_A-nodosum_M_contig104.51.1|Name=mRNA_A-nodosum_M_contig104.51.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
PSRSSTLAVAAPGGRDRPIRDWKAIGRFSLSVENEQADAGRDGRTRLARP
NYQARTVTGKYSFSLFS*
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mRNA from alignment at A-nodosum_M_contig104:498599..499155+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig104.51.1 ID=mRNA_A-nodosum_M_contig104.51.1|Name=mRNA_A-nodosum_M_contig104.51.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=557bp|location=Sequence derived from alignment at A-nodosum_M_contig104:498599..499155+ (Ascophyllum nodosum dioecious)
CCTTCACGATCATCAACCTTAGCGGTTGCTGCACCCGGGGGAAGGGATAG
GCCTATCCGCGACTGGAAGGCCATCGGCAGGTGAACTCACCAATGCTCAC
GCCATCGGCACAAGTTATCGTTTACAATTTATGCTCCGTAAGAGGCCGTA
AATAGAGTGCAGGGGGTCCTGTACAGCAACGAAACTCCTACGCAGTCGCC
GTTCTAATGCGACACATGCTTTCACTCAACTACAAGTACGACTTCCTGAT
CATCAGCACCTTTGCTGTTGTACTATTAATAAATAGACTCCGCCTCCAAT
ATTTCCTGTATCACGCATGTCCACAACACCAGATTCAGCCTGAGTGTTGA
GAATGAGCAGGCTGACGCGGGACGGGACGGCCGAACCCGTCTCGCGAGAC
CAAATTATCAAGCGCGAACGGTGACAGGGAAGTATTCATTTTCCCTGTTC
AGCTGACCATGAGCACGATTGGCAACCTTACCTGGTTGTTGCATACTCTG
CTATAAGTTATGATCATGTATATATACATTCTTGCTATAAATATGTGATG
ACGATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig104:498599..499155+

>mRNA_A-nodosum_M_contig104.51.1 ID=mRNA_A-nodosum_M_contig104.51.1|Name=mRNA_A-nodosum_M_contig104.51.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig104:498599..499155+ (Ascophyllum nodosum dioecious)
CCTTCACGATCATCAACCTTAGCGGTTGCTGCACCCGGGGGAAGGGATAG
GCCTATCCGCGACTGGAAGGCCATCGGCAGATTCAGCCTGAGTGTTGAGA
ATGAGCAGGCTGACGCGGGACGGGACGGCCGAACCCGTCTCGCGAGACCA
AATTATCAAGCGCGAACGGTGACAGGGAAGTATTCATTTTCCCTGTTCAG
CTGA
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