mRNA_A-nodosum_M_contig104.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig104.32.1
Unique NamemRNA_A-nodosum_M_contig104.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig104.32.1 vs. uniprot
Match: A0A6H5L7X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7X8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.810e-17
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  580 QLGLMRNDLDDVRREIASVIERVELVREDLYGERSSARSTFLSIWWCCRRRDLRNLEDRLWIRLHQLQEKENELHRQRTAFLSLSL 837
            +L +MR++L+D       VI +++ VR DL GE SS      S+  CC+RRDLR LEDRLW+RLHQLQEKENELHRQRTA LS  L
Sbjct:    7 ELEMMRDELEDXXXXXXXVIAQIDTVRADLNGEDSSC--GIESMCCCCKRRDLRRLEDRLWLRLHQLQEKENELHRQRTAILSRPL 90
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7X8_9PHAE4.810e-1758.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:372551..376628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1263
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_006820.2
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.3093536-UTR-A-nodosum_M_contig104:372550..3726371680866408.3093536-UTR-A-nodosum_M_contig104:372550..372637Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig104 372551..372637 -
1680866408.3538094-UTR-A-nodosum_M_contig104:376097..3766281680866408.3538094-UTR-A-nodosum_M_contig104:376097..376628Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig104 376098..376628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.324635-CDS-A-nodosum_M_contig104:372637..3729691680866408.324635-CDS-A-nodosum_M_contig104:372637..372969Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 372638..372969 -
1680866408.3330512-CDS-A-nodosum_M_contig104:373944..3741021680866408.3330512-CDS-A-nodosum_M_contig104:373944..374102Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 373945..374102 -
1680866408.3433616-CDS-A-nodosum_M_contig104:375942..3760971680866408.3433616-CDS-A-nodosum_M_contig104:375942..376097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 375943..376097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.32.1prot_A-nodosum_M_contig104.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig104 372638..376097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig104.32.1

>prot_A-nodosum_M_contig104.32.1 ID=prot_A-nodosum_M_contig104.32.1|Name=mRNA_A-nodosum_M_contig104.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=215bp
MHPSVDVRVTSQERIRQLGLMRNDLDDVRREIASVIERVELVREDLYGER
SSARSTFLSIWWCCRRRDLRNLEDRLWIRLHQLQEKENELHRQRTAFLSL
SLRSDSRGESPAVVRQPSPVSPEEAPESPPWQQRSLRPERRQPASIASTQ
GREYGRPPNTGSNTINRAVSHAAQVRLPVRVEATRPADVAYQPPSIRRRS
SRPGFAEDTGSGAE*
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mRNA from alignment at A-nodosum_M_contig104:372551..376628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig104.32.1 ID=mRNA_A-nodosum_M_contig104.32.1|Name=mRNA_A-nodosum_M_contig104.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4078bp|location=Sequence derived from alignment at A-nodosum_M_contig104:372551..376628- (Ascophyllum nodosum dioecious)
CCCGAACTATACACGCCTTCCTAGTTTGTAAGGGACAGGGTCCCGCGCGA
CTGTAAGAAATTTTGTCCGTTGGCAATGGCAAACGCTCTACGGGTTACTG
GACAAGTTACCCTGGGACGCGCATAAAGGAAAAAGGCCTCCAGTTCTTGA
AAGTAGTATTTCTTTTGTGATGTAACTGCTGTTAATATACTCTATTATGG
AACTATGGTACTCTCTGTACGTTCTGGACAGTAGAATGTAAACTGAACCT
TTTACAATCTTAGCTTCGTGTATTCTCTTTTCTGGACACCGCGGAGGTTC
TTTACCGGCAACACGTCGATTTTCAGTCAAATTCACCGTAGCGGTGGTAG
CCAGAAGTTCCTGCGTGCAAAATCTCATCTTGACTTTGAAATTTTCAAAT
CCACCTCTTGTTATCGATTGTGACAATCGATGCTCACCATGCACGGCACG
CGGGATCGCCAATCTAGTGGACAGACACTTAAAACATAGATCGTCCGCGG
ACAGTGAGAGGATAAACTAGTACGCTGTAAGATGCACCCCAGCGTCGATG
TTCGAGTGACTTCACAGGAACGAATTCGTCAGCTGGGCCTTATGAGGAAT
GACCTGGACGACGTTCGCCGAGAAATCGCTTCTGTGATCGAGCGCGTCGA
ATTAGTTAGAGAGGACCTCTACGGGGAACGAAGCAGGTTCAATTAATTTC
ATTGCCATAGGCTGAGCAGGACTCCACTTGTGTACGTACATCATTTAGGC
TCCAGATACGTAAAGACACCTAAATCACGACTTAAATTCCTGGGAGCTGC
TGTCTCTCGACGCCGCCCGCGTTAGCCTCGGCAGAAAGGACTCAACTGCA
TAGCTTTTGTCAACGCCTGCCCTCAGCGAGGCGCCAGGAGAACGGTAAGT
ACTGACAGCAGTATAGAGGATTATTATACCACCTCTGAAATCTAATACCC
CCGTATATATACTTTCTCTTGTTCACATACGTGTAATCGCGCGGCCGGCC
CGTCGTGCGATTATATACTCGTACAGTATGCCCACCAGCCACTGTATCTC
TAAAGTCTGTGTGGTCATCACGCTCAGCAGATTGGGCATCACTAGGGTAT
TGTTAACAATCCTGGAATTTTAGTAATTTATTGTCCTCTTTTCTGAGCAG
TATTTTCCTTTGATTTCCGTAAACGGACAGACAGCCTCCTTCTACAGTAC
GCCCTATTAATAGAGTACCTTGCCCGAAGAGTCATCTGTCATCTCGGGTA
TAGGGTGAAATATCTTCACGTGGAGAGATGTTTGTACTGCCAGAAAAACC
GTTGCATTTCCCCTTTGTTATAGGATGTTTAACCGCGTATAACAGAAAAT
GGGTCAATCCGGCAAGGTTGCCAACCCTGCTCGTGGCCAGCTGAACAGGA
AAAATGTTTTTTTCCCTGTCCCCGTTCGCGCCTGAGAACTTAGTCTCGCG
AGTCAGGTCAGCCATCCCGTCCCGCGTCAGCCTGCTTATTCTCCGTATTC
AGGCTGAATCTGGTCCTTACTCACGACATTACTCCCGCTTTCCGCGGCGG
CGTCAACTCATTCATACCGTCAACCACCATCAGGTCAATCTCTAGTTTAT
CAGGTCACCCAATTTCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGG
CACAGAGGCCAGTAATCAAGATGGTTCCAATAAACGGGTTCTCCCTAGTC
AGATATCACAATGGACCAATTTTTGTGCGCATCTCTCTTCCCGAAGCTAC
TAGAGCCTAGACTATTTGGTACAGTGTCTGTTTTGGGATGTATTTTAGAA
ATCTCAACGCGTCCAAACCCACCGAGCATCCACACCATCCGAGGGAAATA
TATCGAAACGTTTGATTGGGAACATCGAATAAATCGAGTCTCAACGATGC
CCAGTAAAACATGTATTATAGCTCTTATCGGTTGCTAATCTGGGAAGAAG
AAGCGATGATACATTGAAAGCTAAAAATAAGACCCAAAAACAAAATTATG
ATCAGCTAGCTCTTCGTTTATGTGTCCTCAAAACAATGGTTTCTTTAGGC
AGCATTGTTGCCTTGGATCAGACAACGAGCACCACGAACTACCGCCTAAC
TCGGGAAATTTAAAATTCGAATTTTGGTTTCGTGGTGTAGTCGGTACTCT
GTTCAGCAATGTACTAGCATTAGAGTACTGTTTCCTCTCGTTGACCTGTC
GTGGGGATGAATGTACCTTTTTCTGACCCGCGTTCTGCACAAATGATGGA
TGTCTTCCGTCATCACCGGGGACGGCTGAATCTCTTTTCACAGCATCTTC
CTTTGTGCCAAAAAGAGCTACTCTGTAATTTATGTAGTATTATAGTAGTC
CGGTAAAGCTGTGCAACATGTAGCCGCGCTTTCCAACATGTAATACAGTT
TAGAATACTTCGTGTCGTGCCATTAATACTCCTATGTAGTACCGGAGTGG
TTATCATCGTCGAGGCTTTGATCTGAGTCTCTCTGAACCTGCTACCGAAC
ATCCACCGCCGAACGTGGTCTTGCAGTGCGCGTTCGACTTTCTTGTCCAT
CTGGTGGTGCTGTCGGAGACGAGATCTACGAAATCTCGAAGATAGGCTTT
GGATCCGCCTTCACCAACTACAAGAAAAAGAGAACGAACTTCATCGTCAG
AGAACCGCATTTTTGTCCCTCTCGCTACGTTCAGGTGCAGTAGGAATCCA
TCGCACTTGACTGAGGCTGATGTTCCTCATTCTGAGAAATCGATGGGTCG
GATGACTTCGCGATACGTCTGTCTCCGGCTGAGCCACTTTCACACGCTAT
ATTTCAGATCGTTGTTAGTTGAGAACTTTCACACCCGCCCCCGAATGCTT
CGGTAAAATACGCCGGGGGTGTAACCGTAGGAAGACTTGAGACGTTTCAG
GGCGGCAGTGGTTGGTCCATTTCCAGGTTCTCCACAACGGGGCCTGCTAC
GGCGATAGAGACGCGTGATCGTATTTTTAGGCTTCCCATGTGTCAAGGCT
TTTGATGGTTTCGTCGGTAAAGTAGTGCCAAATATTTGCCTAGCGAGTGG
ATCCCTCGACAGCGTGTCGGGCACGTTCCAGCGACGCGTCTAGCCTTCAT
CTTGATTTTGATTTTTACTGCCCCCCCCCCCTTACTCTTGGAGTACCAGT
ACTATCAAAAACGTACCATCAATTCTGTATCGAGAGAAGGATTTCGTGTA
AAATAGGCACCACTGTATGTCCAGACTGTAGAGCTCGGGGACCACGTCCG
TTTTTCCACGTGCTCCGAGAAGTCAATTGATTTCTTGGTTTTTTCTTACT
GTACCTGGTAGTGAATTTGTATACATGTCGTCTTCCTCCTGTCTAATAAT
GGTATTAATAATAACACCGCACGAATAATATTTTATTCCAGAGTAGTAAT
AATGATAGATTTGGCAGGTGACCACGAATCGGACTGGCAAACTTGTATAC
CTGTCCAATCGATTAATGTGAATAAAATCCACATGTACACACAAACACAA
ACACACGTCAGCGTGAACGAAAAGAATCGCGGGCCAACCGCCCCTTACAA
GGAAAAACATGTCCGACTCCGATTTGGGCACATTGCTTTGCTTGCCCTCT
AAATTGGTCGCCTTTGCCATTTACCCTTGTAACAAAAAGTTTGGCTTGCA
TTCCGACAGATAGCAGAGGAGAGTCTCCAGCGGTTGTGCGGCAGCCTTCA
CCGGTGTCACCCGAGGAAGCCCCGGAGTCTCCACCTTGGCAGCAACGCTC
CCTGCGCCCTGAACGACGGCAGCCGGCTTCAATCGCTTCAACTCAGGGTA
GGGAGTACGGCAGACCGCCCAATACTGGTTCTAATACTATCAATAGAGCA
GTATCGCATGCGGCGCAAGTTCGGCTCCCTGTGCGCGTAGAAGCGACGCG
ACCAGCTGATGTGGCGTATCAACCGCCGAGCATTCGCAGGCGATCTAGTC
GACCGGGATTTGCGGAAGACACCGGATCAGGCGCGGAATAATGCCGCATT
GTTTTGTTTTACCAATTTATCTAGTACTCCAAGGTGGATGGGCATGGCGT
TTCGGAATCTTGGGCGTGTGGCGGTAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig104:372551..376628-

>mRNA_A-nodosum_M_contig104.32.1 ID=mRNA_A-nodosum_M_contig104.32.1|Name=mRNA_A-nodosum_M_contig104.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=645bp|location=Sequence derived from alignment at A-nodosum_M_contig104:372551..376628- (Ascophyllum nodosum dioecious)
ATGCACCCCAGCGTCGATGTTCGAGTGACTTCACAGGAACGAATTCGTCA
GCTGGGCCTTATGAGGAATGACCTGGACGACGTTCGCCGAGAAATCGCTT
CTGTGATCGAGCGCGTCGAATTAGTTAGAGAGGACCTCTACGGGGAACGA
AGCAGTGCGCGTTCGACTTTCTTGTCCATCTGGTGGTGCTGTCGGAGACG
AGATCTACGAAATCTCGAAGATAGGCTTTGGATCCGCCTTCACCAACTAC
AAGAAAAAGAGAACGAACTTCATCGTCAGAGAACCGCATTTTTGTCCCTC
TCGCTACGTTCAGATAGCAGAGGAGAGTCTCCAGCGGTTGTGCGGCAGCC
TTCACCGGTGTCACCCGAGGAAGCCCCGGAGTCTCCACCTTGGCAGCAAC
GCTCCCTGCGCCCTGAACGACGGCAGCCGGCTTCAATCGCTTCAACTCAG
GGTAGGGAGTACGGCAGACCGCCCAATACTGGTTCTAATACTATCAATAG
AGCAGTATCGCATGCGGCGCAAGTTCGGCTCCCTGTGCGCGTAGAAGCGA
CGCGACCAGCTGATGTGGCGTATCAACCGCCGAGCATTCGCAGGCGATCT
AGTCGACCGGGATTTGCGGAAGACACCGGATCAGGCGCGGAATAA
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