mRNA_A-nodosum_M_contig1036.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1036.33.1
Unique NamemRNA_A-nodosum_M_contig1036.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A0U1WNP6_SARFS (NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxID=3009 RepID=A0A0U1WNP6_SARFS)

HSP 1 Score: 99.4 bits (246), Expect = 1.990e-23
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSNRPYRCKIKAPGFSHLQGLNFMAKSH MLADVVTIIGTQDIVFGEVDR
Sbjct:  350 GSNRPYRCKIKAPGFSHLQGLNFMAKSH-MLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A0V0H7K6_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H7K6_SOLCH)

HSP 1 Score: 92.0 bits (227), Expect = 3.850e-23
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSNRPYRCKI+APGF+HLQGL+FM+K H MLADVVTIIGTQDIVFGEVDR
Sbjct:   48 GSNRPYRCKIRAPGFAHLQGLDFMSKHH-MLADVVTIIGTQDIVFGEVDR 96
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: UPI001894AD3B (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI001894AD3B)

HSP 1 Score: 92.0 bits (227), Expect = 1.280e-22
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSNRPYRCKI+APGF+HLQGL+FM+K H MLADVVTIIGTQDIVFGEVDR
Sbjct:   92 GSNRPYRCKIRAPGFAHLQGLDFMSKHH-MLADVVTIIGTQDIVFGEVDR 140
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A0H5QRL0_9EUKA (Complex1_49kDa domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QRL0_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.720e-22
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSN+PYRCKIKAPGF+HLQGL+FM+K H M+ADVVTIIGTQDIVFGE+DR
Sbjct:   77 GSNKPYRCKIKAPGFAHLQGLDFMSKGH-MIADVVTIIGTQDIVFGEIDR 125
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit n=72 Tax=Phaeophyceae TaxID=2870 RepID=NDUS2_PYLLI)

HSP 1 Score: 94.4 bits (233), Expect = 1.410e-21
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GS+RPYRCKIKAPGFSHLQGLNFMA SH MLADVVTIIGTQDIVFGEVDR
Sbjct:  350 GSSRPYRCKIKAPGFSHLQGLNFMACSH-MLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A8J4QAP0_9ROSI (Complex1_49kDa domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QAP0_9ROSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.480e-21
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GS +PYRCKI+APGF+HLQGL+FM+K H MLADVVTIIGTQDIVFGEVDR
Sbjct:   79 GSTKPYRCKIRAPGFAHLQGLDFMSKDH-MLADVVTIIGTQDIVFGEVDR 127
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BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A4D6E538_9PHAE (NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E538_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.950e-21
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSNRPYRCKIKAPGFSHLQ LNFM+ SH MLADVVTIIGTQDIVFGEVDR
Sbjct:  350 GSNRPYRCKIKAPGFSHLQALNFMSNSH-MLADVVTIIGTQDIVFGEVDR 398
[Close]
BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A8F0K0U0_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0U0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.700e-21
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GS RPYRCKIKAPGF+HLQGLNFM KSH MLADVVTIIGTQDIVFGEVDR
Sbjct:  350 GSPRPYRCKIKAPGFAHLQGLNFMTKSH-MLADVVTIIGTQDIVFGEVDR 398
[Close]
BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: A0A1B3IYX9_9LILI (NAD(P)H dehydrogenase subunit H (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1B3IYX9_9LILI)

HSP 1 Score: 92.0 bits (227), Expect = 3.300e-21
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSNRPYRCKI+APGF+HLQGL+FM+K H MLADVVTIIGTQDIVFGEVDR
Sbjct:  248 GSNRPYRCKIRAPGFAHLQGLDFMSKHH-MLADVVTIIGTQDIVFGEVDR 296
[Close]
BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Match: UPI001D107ED7 (NADH dehydrogenase subunit 7 n=1 Tax=Polymyxa betae TaxID=41456 RepID=UPI001D107ED7)

HSP 1 Score: 93.2 bits (230), Expect = 3.660e-21
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR 150
            GSN+PYRCKIKAPGF+HLQGLNFM+K H M+ADVVTIIGTQDIVFGE+DR
Sbjct:  347 GSNKPYRCKIKAPGFAHLQGLNFMSKGH-MIADVVTIIGTQDIVFGEIDR 395
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1036.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1WNP6_SARFS1.990e-2398.00NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxI... [more]
A0A0V0H7K6_SOLCH3.850e-2388.00Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
UPI001894AD3B1.280e-2288.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A0H5QRL0_9EUKA1.720e-2284.00Complex1_49kDa domain-containing protein (Fragment... [more]
NDUS2_PYLLI1.410e-2194.00NADH-ubiquinone oxidoreductase 49 kDa subunit n=72... [more]
A0A8J4QAP0_9ROSI1.480e-2184.00Complex1_49kDa domain-containing protein n=1 Tax=C... [more]
A0A4D6E538_9PHAE1.950e-2192.00NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae... [more]
A0A8F0K0U0_9PHAE2.700e-2192.00NADH dehydrogenase subunit 7 n=1 Tax=Analipus japo... [more]
A0A1B3IYX9_9LILI3.300e-2188.00NAD(P)H dehydrogenase subunit H (Fragment) n=2 Tax... [more]
UPI001D107ED73.660e-2186.00NADH dehydrogenase subunit 7 n=1 Tax=Polymyxa beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1036contigA-nodosum_M_contig1036:112995..113147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog244582.JQAK01000007_gene2250
Preferred namenuoD
PFAMsComplex1_49kDa
Model size153
Max annot lvl766|Rickettsiales
KEGG rclassRC00061
KEGG koko:K00333
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.97e-21
EggNOG OGsCOG0649@1|root,COG0649@2|Bacteria,1MVIN@1224|Proteobacteria,2TQZ0@28211|Alphaproteobacteria,47ET3@766|Rickettsiales
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size153
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.2203941-CDS-A-nodosum_M_contig1036:112994..1131471680866405.2203941-CDS-A-nodosum_M_contig1036:112994..113147Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1036 112995..113147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1036.33.1prot_A-nodosum_M_contig1036.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1036 112995..113147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1036.33.1

>prot_A-nodosum_M_contig1036.33.1 ID=prot_A-nodosum_M_contig1036.33.1|Name=mRNA_A-nodosum_M_contig1036.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
GSNRPYRCKIKAPGFSHLQGLNFMAKSHIMLADVVTIIGTQDIVFGEVDR
*
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mRNA from alignment at A-nodosum_M_contig1036:112995..113147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1036.33.1 ID=mRNA_A-nodosum_M_contig1036.33.1|Name=mRNA_A-nodosum_M_contig1036.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1036:112995..113147- (Ascophyllum nodosum dioecious)
GGTAGTAATAGACCGTATCGTTGTAAAATTAAAGCGCCAGGTTTTTCTCA
TTTACAGGGTCTTAATTTTATGGCTAAATCGCATATTATGCTGGCCGACG
TAGTGACTATTATTGGTACACAGGATATAGTTTTTGGAGAGGTGGATCGT
TAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1036:112995..113147-

>mRNA_A-nodosum_M_contig1036.33.1 ID=mRNA_A-nodosum_M_contig1036.33.1|Name=mRNA_A-nodosum_M_contig1036.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1036:112995..113147- (Ascophyllum nodosum dioecious)
GGTAGTAATAGACCGTATCGTTGTAAAATTAAAGCGCCAGGTTTTTCTCA
TTTACAGGGTCTTAATTTTATGGCTAAATCGCATATTATGCTGGCCGACG
TAGTGACTATTATTGGTACACAGGATATAGTTTTTGGAGAGGTGGATCGT
TAA
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