mRNA_A-nodosum_M_contig1036.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1036.27.1
Unique NamemRNA_A-nodosum_M_contig1036.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1036.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1036contigA-nodosum_M_contig1036:98474..99245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size772
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.8064802-UTR-A-nodosum_M_contig1036:98473..988431680866404.8064802-UTR-A-nodosum_M_contig1036:98473..98843Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1036 98474..98843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.8167865-CDS-A-nodosum_M_contig1036:98843..992451680866404.8167865-CDS-A-nodosum_M_contig1036:98843..99245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1036 98844..99245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1036.27.1prot_A-nodosum_M_contig1036.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1036 98844..99245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1036.27.1

>prot_A-nodosum_M_contig1036.27.1 ID=prot_A-nodosum_M_contig1036.27.1|Name=mRNA_A-nodosum_M_contig1036.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MSSASPSPTLSSATDVLLVSPSIGPTVCTPSLRSHVIALPTRSVSPVRSL
RLSSEAPTVQSLQLNPEIEILPQLSGSLVAPATAPLTCAPSLTESALRSQ
RRDALRALRDAAILSPLPPVHLPDTESRVGAQTE
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mRNA from alignment at A-nodosum_M_contig1036:98474..99245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1036.27.1 ID=mRNA_A-nodosum_M_contig1036.27.1|Name=mRNA_A-nodosum_M_contig1036.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=772bp|location=Sequence derived from alignment at A-nodosum_M_contig1036:98474..99245+ (Ascophyllum nodosum dioecious)
ATATCATCTCCTAATGGGAAAAATGGCTAGACAAATAGAACTCCTTTTGA
GTTTGCAGTTGGAAGCTTCGCCTCTCTGTTTAGTTCGTTCGTCCCCCGAA
AAAGCAATCAAGAGAAGTTTTAAGTAAACCGAGGACTCTACCCGGAACAG
CCTCTTCAGTACGGAAACAAGAACTACTACGCGTGAGTTGTTCATCGTGC
AAACCCTGCTTGACCATTATAAAAGTGGCGTCTGACCTCCCTCCGTAGCT
CTGATAAGCTGTTCTCCGGTCGATCGCCCTCGGTGTGAAATACTACGAAT
TCGTGTGACTGACTGGCTGCGAACGCCCTCCGAAAATAAGCTTTTTCCCC
TTCAGTTCGCATCTTGAGTCATGTCTAGTGCTTCTCCTTCGCCCACATTG
TCATCCGCGACCGACGTTCTCCTTGTATCGCCGTCTATCGGCCCTACTGT
TTGTACGCCCTCGCTTCGCTCACATGTTATAGCCTTGCCTACTCGATCTG
TTTCCCCTGTCCGATCGCTACGGCTCTCTTCTGAAGCACCTACAGTACAA
AGTTTGCAGCTAAACCCGGAAATTGAAATTCTGCCCCAACTCTCCGGTAG
CTTAGTTGCTCCCGCCACCGCGCCACTGACTTGCGCTCCTTCGTTAACAG
AGAGTGCACTACGCTCTCAACGCCGCGACGCTTTGCGTGCCTTACGCGAC
GCAGCTATACTATCTCCCTTGCCACCTGTACATCTTCCTGACACAGAAAG
CAGAGTTGGCGCCCAAACTGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1036:98474..99245+

>mRNA_A-nodosum_M_contig1036.27.1 ID=mRNA_A-nodosum_M_contig1036.27.1|Name=mRNA_A-nodosum_M_contig1036.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig1036:98474..99245+ (Ascophyllum nodosum dioecious)
ATGTCTAGTGCTTCTCCTTCGCCCACATTGTCATCCGCGACCGACGTTCT
CCTTGTATCGCCGTCTATCGGCCCTACTGTTTGTACGCCCTCGCTTCGCT
CACATGTTATAGCCTTGCCTACTCGATCTGTTTCCCCTGTCCGATCGCTA
CGGCTCTCTTCTGAAGCACCTACAGTACAAAGTTTGCAGCTAAACCCGGA
AATTGAAATTCTGCCCCAACTCTCCGGTAGCTTAGTTGCTCCCGCCACCG
CGCCACTGACTTGCGCTCCTTCGTTAACAGAGAGTGCACTACGCTCTCAA
CGCCGCGACGCTTTGCGTGCCTTACGCGACGCAGCTATACTATCTCCCTT
GCCACCTGTACATCTTCCTGACACAGAAAGCAGAGTTGGCGCCCAAACTG
AA
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