mRNA_A-nodosum_M_contig1033.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1033.14.1
Unique NamemRNA_A-nodosum_M_contig1033.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1033.14.1 vs. uniprot
Match: D8LEX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX1_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.380e-33
Identity = 72/125 (57.60%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  538 MSSPLTKPASPWAVKIAQEGKDQGLPHKKIRQKLVLQGLEPELIDNVLNGDMDSSGRDQGPLEPSSPPTSPMRRQVSTRKFHDMLETGISPAAVRQKMAMAGCPPEEIKCFFATHPITTKVEEQE 912
            M+SP  K A+PWAVK+  +GK+QG+P +KIRQKLVL+GLEP+LID V+     S       +EPSSP TSP RRQ+S RKFHDML  G+ PA VRQKMAM GC PEEI  FFA+       E +E
Sbjct:    1 MASP-GKAAAPWAVKLVHDGKEQGVPAEKIRQKLVLEGLEPDLIDGVVEAG--SLSAKLHTIEPSSPCTSPQRRQLSARKFHDMLSVGLPPAVVRQKMAMDGCQPEEINNFFASAGGVATAEAEE 122
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1033.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEX1_ECTSI2.380e-3357.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1033contigA-nodosum_M_contig1033:24362..31655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1588
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionWASH complex, subunit CCDC53
Ec32 orthologEc-21_005870.1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.9823928-UTR-A-nodosum_M_contig1033:24361..248981680866401.9823928-UTR-A-nodosum_M_contig1033:24361..24898Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 24362..24898 +
1680866402.0277705-UTR-A-nodosum_M_contig1033:30988..316551680866402.0277705-UTR-A-nodosum_M_contig1033:30988..31655Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 30989..31655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.9952328-CDS-A-nodosum_M_contig1033:24898..251341680866401.9952328-CDS-A-nodosum_M_contig1033:24898..25134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 24899..25134 +
1680866402.0046074-CDS-A-nodosum_M_contig1033:26045..261091680866402.0046074-CDS-A-nodosum_M_contig1033:26045..26109Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 26046..26109 +
1680866402.0178375-CDS-A-nodosum_M_contig1033:30904..309881680866402.0178375-CDS-A-nodosum_M_contig1033:30904..30988Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 30905..30988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1033.14.1prot_A-nodosum_M_contig1033.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1033 24899..30988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1033.14.1

>prot_A-nodosum_M_contig1033.14.1 ID=prot_A-nodosum_M_contig1033.14.1|Name=mRNA_A-nodosum_M_contig1033.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MSSPLTKPASPWAVKIAQEGKDQGLPHKKIRQKLVLQGLEPELIDNVLNG
DMDSSGRDQGPLEPSSPPTSPMRRQVSTRKFHDMLETGISPAAVRQKMAM
AGCPPEEIKCFFATHPITTKVEEQEVA*
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mRNA from alignment at A-nodosum_M_contig1033:24362..31655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1033.14.1 ID=mRNA_A-nodosum_M_contig1033.14.1|Name=mRNA_A-nodosum_M_contig1033.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7294bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:24362..31655+ (Ascophyllum nodosum dioecious)
GTCTGCTTTTGTTTTGGTGTCCTACTATCAGTTTGTCCCTACAGCCAATG
TTCCCACCTAAACCTTTTGACTGATTGGAAGGTTTAGATGCGTTCACACA
ATGCACGGGGGGAAAAGGGGGGAAAATCACCGAAAAAACGATGGATACGT
TCATTTTTTTTATGAACACCCGAAATATGACAGCCTCATTACGTATTTCT
CCGCCGCGAAGACACACGATGTGTGTTTGTTTTGAATTACAGTACTGTAC
TGTACATCGAAACCAGCCCCTAAAAACCTTCCGGTACATAACGTCACCAT
AAAGTCCAGAATCCCTCCGTTAGGTTGCAGGCAGAGGTAATAAGCAAGGT
TTCACCCGTGAGCTCATCATACTGGAACTTCTACCAGCACGCAGGGGTGG
TCTCGCCAGGAAAAAAAAAGGGTTGCGAGAGTATTACACGGGCGGCTGTA
CAAACGAGTACTACTCGTCGCGAGATTGATATAGTGGATTTTTAGGTGCC
CACAAACTCACACTATTTACAAATACTAGTCGAAATAATGAGTTCGCCGC
TGACGAAGCCAGCATCACCGTGGGCGGTGAAGATCGCTCAAGAAGGCAAA
GACCAGGGTCTTCCGCACAAAAAGATCCGCCAAAAGCTCGTTCTGCAGGG
GCTGGAGCCCGAGCTGATCGATAATGTGCTGAACGGAGACATGGACTCGA
GCGGGAGGGATCAAGGACCCCTTGAGCCGAGCTCTCCTCCGACATCGCCG
ATGCGACGACAGGTCTCTACCAGGTCAGTGATTTGGACGAGTACTAAAGC
TAGAACAGAGGTACGTGGTTTGTCGGGGGCTTCTCCTTGATACTTAGGTT
GGGTGGGGTGCTCCCTCAGCTAGTTATTCTACCGTCGTCGTCGTGGAGAC
GAGAAGGGTACAGAATATACAACAACAAAAAAAAGCAAGAAATACTCGTC
TACAGAAGATGCAAAAACACACAATCTAGGGAGACCAGATTCTCAAGCGC
AAACGGGGGCAGAGGAAAGATTCATTTTCCCTGTTCGTTCAGTCTGCTGT
TGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCTGACCTCTATCCAGT
ACCCTTCTCTTTCTTACTCTTCCAAGGCAAAGAAACGAATTTCCGTGGTC
ACACGCTAACCCAAAATAAGAAAGTCCAACACTTGCGAAAAACATATGAT
ACAGGTTCCTAAAAGTAACAGGTTCAGAAAAACAAGAAGCAGGTTAGGGT
AGGAAAACCCCAAAAAAGGAAGTAGAGCCCATCGCTCCAAACTCGGAAGC
TGAGTCACAAACAAAATATCCTACGTATATAGGAATACCATGCTGAACAT
GATGAATTATTACTGTATAAGTACGGATGATGTTGAACCCTTCAAAAGTT
ACTCCAGCGAAGCAGTACGAGGAGTCGTGCACGATCAGGTGTTTTTCACC
AAGTTAGATTAGATGAGACTGTAGTCGCGTAGGGTAGCTGGGCAGCACAA
TATATATACCAGTAGTCTATAATGTTGTATGCAGACCTCGTTGGCAACTC
TGGGCTCGAAACAAGAATTACAGTATTATTATTTCATCATTCATGTTCGA
TGTTCGGCCTCCGCTCTGATGGCGTGTGTGACACATGTATGCTGTGATTC
TCTCCGGACACGCATCACGCTGAACCGCGAGAAGGAAGTTCCATGACATG
CTCGAGACTGGAATCTCTCCTGCTGCTGTGCGACAGAAGATGGCCATGGT
GAGAGCAGAGCCACTCTCGTACGTACGTGACTTGACTTGTAGAAGAGGAG
ATTCGGATTACTGCATGATGTCCTAAAATGGTCATGGTTAGAGAACTACT
GGTACGTACGTACTTGGAGAGTCTCGAGCGAAGGCATCAGCCAGCGGATG
AAAAAGCTGACCACTCTTTCTCTTATAGATAGCGTAAAGATTGATTGATT
GATTGTGTATATGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTCCTATTTA
CTGTAACATATCAAGTATGCCATGCTTCAACGTACACGACCCAGCACGTC
GCATAACCATGGCAGGCAACAGACCATACGTATAGGAGTACTGTCTGTAA
ACAGTGTAATTTACAGGTTATCCGCGGTACCATATGTACAAGTTAGTTGT
TGTTGGTACGATACGATTATGTACTACGACGTGGAACAGCCCCGGTGGTT
CAGTTGGTTACCTCGAAACCTTCTGACGTTGGGATGTGAGTTCGAATCTC
GGCGCAGTCACACGAACTGGGATTTGTCCTAAATATATATATATACGGAA
TATATATATTAACTGAGAAAAATGCCCAACAAGTGGAGAACATTTGATTC
GTGGGTATGTACACAAAATTCGATTCACGGTCGACGAGGGAAAAGGATGG
CTGAATCATTTTCGCGAGAAAAATGGAGGCAAGCATCGCAGAAGGAAGGT
GGAGAAATCCTTTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGCCC
ACAAGTCTGACTTCCAGAATAAATGGGATATGCGTGTGTTATTTATTAAA
TTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCA
CTCGCATTGATCCTCCCAAGGGGGGATCAATGATACTTGTTACGAGGTGT
ATGTGTGTTCAATGAAAAATCTAAACCCATCTAAATCTTCTGAGCATTCC
CCAGACAGGGGGAAACATTGTCAAAACGTTTTTTAGGTGGGAACATAGGC
TGCAAAGACAAAACGTCTTCATGGCATTCAATCGGGTTAGTCTAGATTAG
TTATATTCCCCGATGGTAGTAGAATAGGATCAACAGTATAATGTGGGGGA
GAAACCCACCGTTGTACTGTACACTTACATTGATCGCCATGCAGGGACAC
CAAAACAGGGATAAAAGACGCGATGAACATGGATAATTATGTTTCATTGG
GTCTGGGATCAGATGGGTGGGGTGCTCTGCCAAACTTTTTCCCGATTGAG
CAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTTTTTTCGGGTTGG
CAACCAATATGCTGAATGTGAGAAACATTATGTTACCATCCATATTATTA
GCCATCATACAAAGTTAATTATAGATTGAAAAGGAGGGAGACAAGGATTG
CTTTTCTGATAATTATCAAGTGAATCTAACAGCGAAAGAAAAAAGGTATA
TAATGACAGGAGTATAACTGCCAGTTGGAGGGGGCAAAAGGCAAAATGAA
TCTATACATTATACTGCTGATAGTCCAGTATTTACAGAGAGAGGTTTTAA
CAGGCAGAGATTAGAGTCTCGAGGAAGGTTAGAGGATGAGAGAACAAAGA
GGACCACCAACCACACAAGTCTTGAACATACTGTAATCCAGAAAGTACCA
GAGACCGTTATTCACCTGAAATTAGTAGAAGAGCAGTGGAGGGAATAAAG
GCCACAAGACAGGAAGGAACAAGGGGCAGGTAGAAAGGGAACGCACCTAA
CATACCTGTCAACTGCACACCGAATGCTCCGTAATTCAATACCTAAGCAA
ATAACTAATCTAAGACCGTCGCGAGCGGCCTGGTAGACGATCAGAGGAAC
ATCATCTACAGAGGGGGAGATGATGGGGGGGGGGAGGCGTTTTCGACTTT
TCCTAGACTTTCCATCTATTAATACTACAGAAAGAAGTATATTATAGTAC
TATGCTGTCTTGTATCATCCCCGTATGATATCCCCCATATCATGCCAGTC
CTTTTTGGGTGGACGCGACACGAAAAGTGGGGGAAAGGTTCGGAGAGATT
ACCCAACAGTCAGCAAACAAGGACCGCTGTGTACTAAATTAATATTGACA
CAAACATCTTTCAAGTGACTACTGTAGAGTTACGGGGTAGTAATTGCTGA
CAGGTCTACCAGGATGTATCACACGCATATTGTTACGACATTACACATCC
TCCATCTTGAGTTCATCACCTGGGTGTAGGCTCTCCTAATTCTTATCATA
CTGCTGTATCACTCTCAATTATATACAAACTCTGTACAACACTTACACTA
TACTATACTATACCTGTGATACAGACAGTACAAGTAGTATTGTTTGTTTC
AAACTCTCCTCTTATTTTTACAGTATTTATGTAGAGCTATTCATGTATGT
ATGGTCATCACATATAACAGAGTATGGATCAACCGGGTAAGGTTGCCAAT
CCTGCTCGTGGTGAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGT
GCGTGCCTGAACTTCTGTCTCGCGAGACGGGTTCATCCGTCCGCTCGTCG
CGTCAGCCTGCTCATCTCCATACTCAGGCTGAATGTGGTGTTACTTATGG
GATTCCTCCGAGTTCCGCGGCGGCGTCCATTTGTGAAACCGCATACGCCA
TCGGTCAGTCGAGTTTATCGGGTCACGCATTACGTACCGATGGCGTTCAC
CGAGAGTCCGCCGGCACAGTGCCAGTAAACCTCAAGGTAGTTCCGAACGA
GTGCTGCTTTGGCAGGTCACCATGGACCAATTAATATCCGCCTCTCTTTC
CCGCACCCACTATTGGTATGAAGTGGGCATTTTGAAAGTATGTACCTTTG
TTGCCTTGGTCCTGCCAGAGGGATGGACTTCTATGCATACTGCAACACAA
TGACAACAACGCACATGCACAGTAACATCATGACCTTGAACTATACTTGA
ATATAGTATGTAGTACAGGAAGACTTCCCCCCCAACTTCAACTTGACGTA
CATTACGTTGTTTGTACAGTAGTAACGCCGGTACTTTCAACATGCCCACT
TCACGCCAATAGCGGGTGTGGGAAAGAGGCGCATATTTCTTGATCCATGG
TGACCTGCCAAGGCAGCACCCGTTTGGAACAACCTTGAGGTTTGCTGGCT
CTGTGCCGGCGAACTCTCGGCAGTGAACGCCATCCATACGCAATTGCGCG
ACCCGATAAACTCGGGACTGGCCCGATGGCGTATGGCGGCTTAGATAAAT
AAATGGACGCCGCCGCGGAAATCGGGAGGAACCCCGTGAACAAGCACCAG
ATCCAGCCTGAGCATGGAGAATGAGCAGGCTGACGCGGGACGGGACCACC
GAACCCGTTTCGCGAGACCAAGTTCTCAGGCGCAAACGGGGACAGGGAAA
TGTTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACC
CGGTTAATCCTTATTTTGCTACATATGTGATGACCATACTGTGGCCAATC
CCGGTTGCGGTTTGCTTAACAGAGAAAAGGGAACAAAAAGAGAAAGTCTG
GCAGCACACCGCTCCCCGCCTCACATCCCTCTCCCCAGGCTGCTGCTACG
GGGGAAGGAAAATAAGAAAGGAAAGGAAACACAGTGCGCACAACAACAAT
AACATATGGTCAGAAAGGCACCTCCGTGACGCATCGACATGCCTATAATA
GGCGGAGAATAGGTTTTGGAACAAGAAATGAACCCTTTACTTGAATAAAC
ACTGCAACACTGCTATACGACAGTCTCCGAGGGGTCATGGGAGAGGTCCC
CGATCAATCGTCGGCTGTACAAAATTTAACGTGTGATCGATTTTTGATTT
CAGCATTTTTGTACACACCAAATTTTACCGGATTATTATCACGACTTGAC
CATACGAACATAACAACAATAAAAACAGAAAAAATTGGAAAGGTACAAGA
GTAGGGAAGGGGGAAAGATTGGAAAAAAATGGAAATCACCACAACGGGTC
ACCCTGGTACGTCGTTCCCATCTACTTGTACGGGACCCTGCCGAGCGTGC
GAAGATAATTCGCGGAAACATACCACGAGTACGTCATGACAATCGTGCGA
ATGTGAGAAACAAACAACCTCACCTACCCTATGCATGGTATGATACCTCG
TACGTACGACAGCTTTTCTTCAGCTACAGTAACATCATCAGGACTTTCTG
CAACAAGTACATGATGTAAAATATATAGCAGTACAACACGATTCATGGGT
GTCAACACTTTACGCGGGAAGCCATAATAAGACCTAGTTTTCACAAGAAT
CGAACTCACAACTTCCGCACTAGTGGCCTGCGAGGTTACCACCACTCGGG
CGACGAGGGTATTCTACTGTACTCTACTCTACTGTACTATACCTAATTCA
ATTCTGAAGCCGAAAATAGAGCGAGCCCTCCAGAAACTCGCTATTATAAA
GGGGAAACCTCACACTGGCGTGTTTTTTAGCTTGATTTTTAGTGCTGAAT
GACTTTGTATCGAGTCGCGCCCTAACGAAACCTTTCTTTCTCAACCAGAA
CATCCCTCTCGACACCTCCGCCAAAATAAACAACGATCGTGTTTTCAGGA
GATGTGATGGGTTTTGCGTCTGCCCTATCGCATTTTTTTTAATGTTGCAG
CCCCCCTTGTCGTTCCATTTTTTTTTAAATGTTTTGCCCGTCCGTTCCTA
ACGGCCCTGATTGCCCTCTGCTTACTTACGCGGCTTCGTACAAACTAACC
CCTGCCCCCGAACTAACTCCTAACCCCCGTCACACCTTGCAAGGCGGGAT
GTCCGCCTGAGGAAATCAAGTGCTTCTTCGCGACCCACCCTATCACGACC
AAGGTTGAGGAGCAGGAGGTCGCTTGATGCTTGATCGGGCAGACGCAAGG
GTTCGAGTGACCGGCAAGACAGGATGCTTGATCGGGAAGGAGAATTCTAC
GTCGAAGTACGCCACACGGGTCGTCTCGTCGGTGTACAGAACTATAATAC
CACTAATCATATGAAATATGATGCCAAGGAAATATGTTTTCTTGTGGATC
GGGGGAAACGGCAGGCAGACTTGTCTGCTTCACAAGTAGGTGCAGTCGAA
GTGTTGTAGACGAGGTGTTGTATTCCGAAAGCCTACTGCTGCTGCTGCTG
AGCATGCCTCGAAATACTGTACAGTATAGTGCAGGGTGGTGCGTGCCGCA
AATGCCTGCAGTAGAGGAAAAATCGAGAGGGGGAGCTAGCTTCCCTCTCA
GGTACTCGTTGGGATGTATATAATATACGAGTATTTTCGTGTCCGCGCGA
GTAACTTCCCCTGACCTCGTGCCCCTGTGTGCGTCTCCGTCGTTTACGTT
CATTATCTGTATTACATAAATCGTTATTGTTTTACTGGTGCTGATAGGGG
TGGGATGTTGCATTGGGACATTACATTTTTATTTACGTTAGGTTAGATAG
ACCAAAAGGAAGGGAGACGGTATTGCCATAATACACTAAGCGACGTCGCA
CGAATATCGTCTTTTTTAATGACGGTACGTGCGAATACTTGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1033:24362..31655+

>mRNA_A-nodosum_M_contig1033.14.1 ID=mRNA_A-nodosum_M_contig1033.14.1|Name=mRNA_A-nodosum_M_contig1033.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:24362..31655+ (Ascophyllum nodosum dioecious)
ATGAGTTCGCCGCTGACGAAGCCAGCATCACCGTGGGCGGTGAAGATCGC
TCAAGAAGGCAAAGACCAGGGTCTTCCGCACAAAAAGATCCGCCAAAAGC
TCGTTCTGCAGGGGCTGGAGCCCGAGCTGATCGATAATGTGCTGAACGGA
GACATGGACTCGAGCGGGAGGGATCAAGGACCCCTTGAGCCGAGCTCTCC
TCCGACATCGCCGATGCGACGACAGGTCTCTACCAGGAAGTTCCATGACA
TGCTCGAGACTGGAATCTCTCCTGCTGCTGTGCGACAGAAGATGGCCATG
GCGGGATGTCCGCCTGAGGAAATCAAGTGCTTCTTCGCGACCCACCCTAT
CACGACCAAGGTTGAGGAGCAGGAGGTCGCTTGA
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