mRNA_A-nodosum_M_contig10318.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10318.2.1
Unique NamemRNA_A-nodosum_M_contig10318.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.710e-28
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK+K+WFAT Q DA GR+CHPVEHKVLA LTILGRGN F SIY LSWMS+  VQ  FH+FCEHFATE
Sbjct:  102 LVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATE 169          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.100e-27
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K WF TA  D  GR  HPVEHKVLA LTILGRGNCF+SIY +SWMS+A VQA FHKFC+HFA E
Sbjct:  100 LVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFARE 167          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.110e-27
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K WFATA  DA GRQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+A VQA FH FC+HFA E
Sbjct:  100 LVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFARE 167          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.250e-25
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K+WF T+  DA  RQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+  VQ  FHKFC+HFA E
Sbjct:   73 LVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFARE 140          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.200e-24
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K WF+TA  DA G   HPVEHKVLA LTILGRGNCF+SIY +SWMS+  VQ  FHKFC HFA E
Sbjct:   60 LVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFARE 127          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.600e-23
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K+WF T+  DA GRQ H VEHKVLA LTILGRGNCF+SIY +SWMS   VQ  FHKF +HFA E
Sbjct:  132 LVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFARE 199          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.330e-22
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            +VK K WF  A  DA GR  HPVEHKVLA LTILGR NCF+SI+ +SWMS+  VQ  FHKFC HFA +
Sbjct:  147 LVKSKNWFLAAATDAVGRASHPVEHKVLAWLTILGRNNCFASIFQVSWMSAKTVQGMFHKFCRHFARD 214          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-17
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSS 153
            +VK K+WF T+  DA GRQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+
Sbjct:  136 LVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA 186          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KGU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.040e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   67 VEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
            + H VLA LTILG GNCF+SIY +SW+S+  VQ  FHKFC+HF  E
Sbjct:    2 LPHDVLAWLTILGSGNCFASIYQMSWVSAKAVQTMFHKFCKHFPRE 47          
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.240e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   22 FATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFAT 201
            F TA  D  GRQC P+E KVL  L +LGRGNCF+ +  LS MS    + +FH+FC+ F++
Sbjct:   94 FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSS 153          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE3.710e-2875.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE2.100e-2772.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI3.110e-2775.00Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE7.250e-2569.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE4.200e-2469.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBL1_9PHAE4.600e-2367.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE2.330e-2264.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFR8_9PHAE2.250e-1772.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU8_9PHAE2.040e-1163.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.240e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10318contigA-nodosum_M_contig10318:12695..13800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHarbinger transposase-derived protein, plant
Ec32 orthologEc-12_000730.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.5828633-CDS-A-nodosum_M_contig10318:12694..128201680866400.5828633-CDS-A-nodosum_M_contig10318:12694..12820Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10318 12695..12820 -
1680866400.6027467-CDS-A-nodosum_M_contig10318:13722..138001680866400.6027467-CDS-A-nodosum_M_contig10318:13722..13800Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10318 13723..13800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10318.2.1prot_A-nodosum_M_contig10318.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10318 12695..13800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10318.2.1

>prot_A-nodosum_M_contig10318.2.1 ID=prot_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMS
SAVVQATFHKFCEHFATE
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mRNA from alignment at A-nodosum_M_contig10318:12695..13800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10318.2.1 ID=mRNA_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:12695..13800- (Ascophyllum nodosum dioecious)
ATGGTGAAGCGCAAAGAGTGGTTTGCCACCGCACAGCACGACGCATGTGG GCGGCAATGCCACCCAGTGGAACACAAGGTGAGGTTTGTATGTTGATCAC TCGCGATATGTGGCCTTTGTACGTCTTTACGGCTGTACAAGCAGACTCTC GCTCTCGCTGTGTGTCGAAATGTGGCTTTTGTACGGCTTTACGGCAGGGC AGTACAAGCAGACTCTCGCTGTGTGTTAACTTGTGCACGTGTGAAAAACA AAAATTTGTACCAAAAATACTATGCCACCCAGTGGAACAAAGCAGGTGAG CTTGGCATGTTGATCACTCGCGAAATGTGGCCTTTGTACGGCTTTGCAGT ACAAGCAGACTCTCGCTCTCGCTGTGTGTCGACTTGTGCATCTGTGAAAA TGTACTGCACAAAAAATACAATGCCACCCAGTGGAAGACAAGGTGAACTT GGATGTTGATCACTCGCGAAATGTGGCCTTTGTACGGCTTTACAGCAGTA CAAACAGACTCTCGCTGAGTGTTGACATGTGCACGTGTCAAGAACAAAAA TTTGTACCAAAAATACTAAACAGGAGTCCATGGTGCTGTGCTGCGGTCGC CTACGCCTCGACAGCAGTAGGTGCACCTTGAATGAAAGCTGGCCTGACTG TTAAAACTATTTCGCTCCTTTGCGCCTGATACACACTGCTGCTGTATCGA TATGCCGCTTTTCTCGTGTGTACGCAACGCCAGATTTAGTATCTGTTCCG TCTCACGGCGAGCCCATTTCACCTATCTATGTAGGTACTACAGCCGTGAG CCATAGCAGTGACCAGCAGACGCCGGGTACCGATGACACGAAATGTTCCT GTCGTCTTTTTGGTACAGCGCGACAACCCCGTTCTACACAATGCCTTGAC GCCGATATTGCATCTGGAACAGCATTCCCAGATCGTGTGTACTCCCGCCC CATGAACGTTTGTTGCGACTGCTGCTGCAGGTGCTGGCCAGGCTGACTAT ACTCGGCAGAGGCAACTGTTTTAGCAGCATCTACTACCTGTCGTGGATGA GCAGCGCGGTAGTTCAGGCGACGTTCCACAAATTCTGCGAGCACTTTGCG ACCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10318:12695..13800-

>mRNA_A-nodosum_M_contig10318.2.1 ID=mRNA_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:12695..13800- (Ascophyllum nodosum dioecious)
ATGGTGAAGCGCAAAGAGTGGTTTGCCACCGCACAGCACGACGCATGTGG
GCGGCAATGCCACCCAGTGGAACACAAGGTGCTGGCCAGGCTGACTATAC
TCGGCAGAGGCAACTGTTTTAGCAGCATCTACTACCTGTCGTGGATGAGC
AGCGCGGTAGTTCAGGCGACGTTCCACAAATTCTGCGAGCACTTTGCGAC
CGAG
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