mRNA_A-nodosum_M_contig1031.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.7.1
Unique NamemRNA_A-nodosum_M_contig1031.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.7.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.730e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   28 SRPLSAFDHQVTLGALMNSLRSKSLLSTPTVELKGWTGPPLN 153
            S PL+   + VTLGALM+S+R KSLLS+PTVELKGWTGPPLN
Sbjct:  301 SAPLN-LRNDVTLGALMHSMRPKSLLSSPTVELKGWTGPPLN 341
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTP3_ECTSI7.730e-1073.81Putative GPI-anchor transamidase n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:10227..10983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTP3
Preferred namePIGK
PFAMsPeptidase_C13
Model size194
Max annot lvl2759|Eukaryota
KEGG koko:K05290
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003756,GO:0003824,GO:0003923,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006508,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0016787,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0033036,GO:0034394,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051179,GO:0051641,GO:0070011,GO:0070727,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509
Exons2
Evalue1.27e-10
EggNOG OGsCOG5206@1|root,KOG1349@2759|Eukaryota
DescriptionGPI-anchor transamidase activity
Cds size192
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.9548454-CDS-A-nodosum_M_contig1031:10226..103821680866398.9548454-CDS-A-nodosum_M_contig1031:10226..10382Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 10227..10382 +
1680866398.969683-CDS-A-nodosum_M_contig1031:10945..109811680866398.969683-CDS-A-nodosum_M_contig1031:10945..10981Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 10946..10981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.7.1prot_A-nodosum_M_contig1031.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 10227..10981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.7.1

>prot_A-nodosum_M_contig1031.7.1 ID=prot_A-nodosum_M_contig1031.7.1|Name=mRNA_A-nodosum_M_contig1031.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
GLLLRLGCASRPLSAFDHQVTLGALMNSLRSKSLLSTPTVELKGWTGPPL
NKIPVTDFFGSVLS
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mRNA from alignment at A-nodosum_M_contig1031:10227..10983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.7.1 ID=mRNA_A-nodosum_M_contig1031.7.1|Name=mRNA_A-nodosum_M_contig1031.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=757bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:10227..10983+ (Ascophyllum nodosum dioecious)
GGGCTGCTTTTGCGATTGGGGTGCGCATCTCGGCCTTTGTCGGCCTTTGA
TCATCAGGTGACACTAGGGGCGCTGATGAATTCTTTGCGATCGAAGTCCC
TCCTGTCCACACCCACTGTCGAGTTGAAGGGCTGGACGGGGCCTCCACTG
AACAAGGTGCGGGGAGAGAGAGACTTTTCTGCACAGAAAGAAGCTGCTGG
TGATGGTGGTGCGCTATATGGAGCGAATGTTTTTGTACATTCACGTCTCT
TGACGGGAGAGGTCCTAGACGTGTAGACTAGAGGCAATCAATGTACGTGC
AAAGGTACGAGCGTTATTATTTTTGTCAGTTGTGACTGCCCGCGTGCGCT
CCCGCTCGGGTGGTCGGGTCCCGTCACGCGCCCAATCAGCCGTCAAGATT
TCGGGCTGTGCAGCGATTTTGCTGAAGGACGAGAGCGGCCAGGGGCGGAA
AAATCCGTCGCAGGTTACGGTTAGGTCTTTTATTGCTGCGAGCGGTGGCA
CCACGCCGGTCGTATCAGCACTGGGCAGCTGAGATTTTCTCGCTTTAAGC
GGAATGGAAGAGCTGATGCAGAGGCGCCCAAGGATTATCGAGGGGCGATG
TTCCCGTCGGCGTTCTCGCAGTCGTTGCCCGCTCAGTCGACAACTTGTTT
TTAGATGTCTTCCCTTCCCCCCCCCCCCCCTGTGCAACTCCTGGCACCGT
CTTCCATTCGACCATACAGATACCCGTGACGGACTTCTTTGGTTCCGTGC
TCAGCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:10227..10983+

>mRNA_A-nodosum_M_contig1031.7.1 ID=mRNA_A-nodosum_M_contig1031.7.1|Name=mRNA_A-nodosum_M_contig1031.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:10227..10983+ (Ascophyllum nodosum dioecious)
GGGCTGCTTTTGCGATTGGGGTGCGCATCTCGGCCTTTGTCGGCCTTTGA
TCATCAGGTGACACTAGGGGCGCTGATGAATTCTTTGCGATCGAAGTCCC
TCCTGTCCACACCCACTGTCGAGTTGAAGGGCTGGACGGGGCCTCCACTG
AACAAGATACCCGTGACGGACTTCTTTGGTTCCGTGCTCAGC
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