mRNA_A-nodosum_M_contig103.76.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig103.76.1
Unique NamemRNA_A-nodosum_M_contig103.76.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:906819..907241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size189
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.87076-UTR-A-nodosum_M_contig103:906818..9068341680866393.87076-UTR-A-nodosum_M_contig103:906818..906834Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 906819..906834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.8794658-CDS-A-nodosum_M_contig103:906834..9068621680866393.8794658-CDS-A-nodosum_M_contig103:906834..906862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 906835..906862 -
1680866393.8899555-CDS-A-nodosum_M_contig103:907084..9071501680866393.8899555-CDS-A-nodosum_M_contig103:907084..907150Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 907085..907150 -
1680866393.8988185-CDS-A-nodosum_M_contig103:907164..9072411680866393.8988185-CDS-A-nodosum_M_contig103:907164..907241Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 907165..907241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.76.1prot_A-nodosum_M_contig103.76.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig103 906835..907241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig103.76.1

>prot_A-nodosum_M_contig103.76.1 ID=prot_A-nodosum_M_contig103.76.1|Name=mRNA_A-nodosum_M_contig103.76.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
VLIGRGSKPPDYASLFFGNRCQTKEVFRKINIGGVHLIEGFPNATRQSVM
EFFNSQ*
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mRNA from alignment at A-nodosum_M_contig103:906819..907241-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig103.76.1 ID=mRNA_A-nodosum_M_contig103.76.1|Name=mRNA_A-nodosum_M_contig103.76.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at A-nodosum_M_contig103:906819..907241- (Ascophyllum nodosum dioecious)
GTTCTGATTGGTCGAGGTTCAAAACCTCCTGACTACGCCAGTTTATTTTT
TGGAAATCGCTGCCAAACCAAAGAAGTCCCCAGGGACTTATTTTTCGGAA
AATAAACATTGGAGGTGTTCACCTGATCGAAGGCTTTCCGAATGCTACAC
GCCAGAGGCCAGAGCACAGCAGAGTTACAACAGCAGCACGTAGACAGACT
GCACCGCCACACAATACACACAACTTCTGCTGGCATGGCCCACGCCAACG
GTCCCACGGCGAGGGCAACCGTTAATTCTACCAGCTGGTGGTGGGGACAG
GAGCAACGAGTGGTGGTGCTGGACTTTGTAGACGCCGATACAACCCAAAA
GGCGACGGGTGCTACCTCAGTACAGATAGTGTTATGGAGTTCTTCAACTC
CCAGTAGATTCTTGACGGCAGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig103:906819..907241-

>mRNA_A-nodosum_M_contig103.76.1 ID=mRNA_A-nodosum_M_contig103.76.1|Name=mRNA_A-nodosum_M_contig103.76.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig103:906819..907241- (Ascophyllum nodosum dioecious)
GTTCTGATTGGTCGAGGTTCAAAACCTCCTGACTACGCCAGTTTATTTTT
TGGAAATCGCTGCCAAACCAAAGAAGTTTTTCGGAAAATAAACATTGGAG
GTGTTCACCTGATCGAAGGCTTTCCGAATGCTACACGCCAGAGTGTTATG
GAGTTCTTCAACTCCCAGTAG
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