mRNA_A-nodosum_M_contig103.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig103.17.1
Unique NamemRNA_A-nodosum_M_contig103.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A6H5L450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L450_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 8.240e-78
Identity = 121/149 (81.21%), Postives = 133/149 (89.26%), Query Frame = 3
Query:  453 VRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKMLGLPTSS 899
            VRTAQHAWEKSCYFNIDYKIDE  TV+DAISRMSAYNVGCLIVTKNGVVSGIISERDYVCK++LLG+ SKDT VKEICT+G KM+ A RSDT+E CV+KMI A +RHLPVIDDDTGE+FGLIS  DLVKEY K+RD L+ KMLGLP SS
Sbjct:    4 VRTAQHAWEKSCYFNIDYKIDEASTVYDAISRMSAYNVGCLIVTKNGVVSGIISERDYVCKIALLGKSSKDTTVKEICTRGPKMVAAARSDTIEACVKKMIAADVRHLPVIDDDTGEVFGLIS--DLVKEYTKERDDLLMKMLGLPPSS 150          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: D7FXG6_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG6_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.050e-57
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 3
Query:  549 MSAYNVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKMLGLPTSS 899
            MSAYNVGCLIVTKNGVVSGIISERDYVCK++LLG+ SKDT VKEICT+G KM+ A RSDT+E CV+KMI A +RHLPVIDDDTGE+FGLISVKDLVKEY K+RD L+ KMLGLP SS
Sbjct:    1 MSAYNVGCLIVTKNGVVSGIISERDYVCKIALLGKASKDTTVKEICTRGPKMVAAARSDTIEACVKKMIAADVRHLPVIDDDTGEVFGLISVKDLVKEYTKERDDLLMKMLGLPPSS 117          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A835ZG49_9STRA (CBS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG49_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.490e-56
Identity = 89/149 (59.73%), Postives = 118/149 (79.19%), Query Frame = 3
Query:  453 VRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKMLGLPTSS 899
            VRTAQHAWEKSCY+NIDY ID+   V+DA+ RM+A+NVGCL+VT+     G+I+ERDYVCKV+LLGR S++T +KE+ T  +  +V +RSD+++TCV+KMITA +RHLPV+ DD  E+ GLISVKDLVKEY K++D L+ K+ G   S 
Sbjct:   44 VRTAQHAWEKSCYYNIDYMIDQESKVYDAVQRMAAFNVGCLVVTEQSKPVGVITERDYVCKVALLGRNSRETFIKEVATALK--VVVRRSDSIDTCVKKMITADVRHLPVLSDDNDEIIGLISVKDLVKEYTKEKDELLTKLFGGNLSG 190          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.630e-49
Identity = 75/140 (53.57%), Postives = 113/140 (80.71%), Query Frame = 3
Query:  459 TAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKM 878
            TA  AWEKSCYF ID+KI ++ +V++A+ + +AYN+GCL+V K   V+GIISERDYV K++LLGR+S DTKV E+CT G  M+VA+ +D+++ C+ KM+   IRHLPV++++TG++ G++SVKDL+KE +K++D +I K+
Sbjct:   34 TASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVMKGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKL 173          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.840e-48
Identity = 75/140 (53.57%), Postives = 113/140 (80.71%), Query Frame = 3
Query:  459 TAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKM 878
            TA  AWEKSCYF ID+KI ++ +V++A+ + +AYN+GCL+V K   V+GIISERDYV K++LLGR+S DTKV E+CT G  M+VA+ +D+++ C+ KM+   IRHLPV++++TG++ G++SVKDL+KE +K++D +I K+
Sbjct:  130 TASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVMKGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKL 269          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.200e-47
Identity = 84/161 (52.17%), Postives = 120/161 (74.53%), Query Frame = 3
Query:  399 SAPGKGLRGFSGTAADDGVRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVT-KNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKM 878
            S PG    G + +  ++ + +A+ A EKSCYF ID+KIDE+ TV++A+ R +AYN+G L VT K G V GIISERDYVCK++LLGRQS+ TKVKE+ T G  +IVAK+SD+L  C+ KM+   IRHLPV+D+++G + G++S+KDL+KE   +++ LI K+
Sbjct:   37 SEPGSHSYGETPSTVNE-LSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKL 196          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.390e-46
Identity = 79/141 (56.03%), Postives = 111/141 (78.72%), Query Frame = 3
Query:  459 TAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIV-TKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKM 878
            TA +AWEKSCYF ID+KIDE+ +V++A+ R +AYN+GCL+V +K G V+GIISERDYV KV+LLGR+S D KV EICT    M+VA  SD+++ C+  M+   IRHLPV+ +D G++ G++SVKDL+KE +K++D +I K+
Sbjct:   72 TASNAWEKSCYFKIDFKIDEDASVYEAVQRFAAYNIGCLVVVSKEGKVAGIISERDYVTKVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIRHLPVVGED-GDVVGMLSVKDLIKELVKEKDEMISKL 211          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A6T9YKC1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A6T9YKC1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.960e-42
Identity = 78/181 (43.09%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  330 QAPPSVSRGLQGAVLEVATGRGPSAPGKGLRGFSGTAADDGVRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVTKN-GVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLI 869
            QA P+ SR    A +  A     +AP    R FSG   +D V TA  AW+KSCY  +DY +++  TV+D + R++A+NVGCL+   N G ++G++SERDYVCK++LLG+ SKDT++KEI T+   +I A   D++E C++ M++  IRHLP++D  + ++ G+IS+KDLVK  + +++  I
Sbjct:    9 QALPAASRIGSAAAVRPAA----AAPRFTARTFSGPTVEDAV-TADDAWKKSCYVEMDYTVNDESTVYDFVQRLAAFNVGCLVTVDNDGNITGVVSERDYVCKIALLGKTSKDTRIKEISTKAANLITATPEDSVEDCMQMMLSKDIRHLPLLDSSSKKVVGIISIKDLVKTLLDEKEKAI 184          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A1Z5KQF6_FISSO (CBS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQF6_FISSO)

HSP 1 Score: 156 bits (395), Expect = 1.170e-41
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  426 FSGTAADDGVRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVT-KNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLI 869
             S T AD  V TA  A E S Y  I++KIDE+  V+DA+ R +A N+GCL+ T K G ++GIISERDY+CKV+LLGR SK+T ++EI T+G  +I AK ++T+ETC+EKM+T GIRHLPV+DD  G + GLIS+KDLVK  + +++  I
Sbjct:   23 MSATVAD--VSTADDALELSGYKEINFKIDEDAMVYDAVQRFAANNIGCLVTTDKAGNMTGIISERDYICKVALLGRTSKETPIREISTRGANIITAKGNETVETCMEKMMTKGIRHLPVVDD-AGSVTGLISIKDLVKTVVSEKEKTI 168          
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Match: A0A6C0DQH1_9ZZZZ (CBS domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DQH1_9ZZZZ)

HSP 1 Score: 152 bits (385), Expect = 2.100e-40
Identity = 71/148 (47.97%), Postives = 102/148 (68.92%), Query Frame = 3
Query:  459 TAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAYNVGCLIVT-KNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIVAKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRDHLICKMLGLPTSS 899
            +A  A++ SCY  ID+KI E++  ++A+ R SA+N+GCL VT K   V G++SERDY+ KVS LG+  K  KVKEICT    +I+AK+ DT+E C+ KM+   IRHL VID+   E  G+IS+KDL+KE +KD++ +I ++  L T  
Sbjct:   16 SALSAFKNSCYHKIDFKISEDNNANNAVQRFSAFNIGCLAVTDKENNVVGVLSERDYINKVSALGKDDKTVKVKEICTYKPNLIIAKKGDTIEQCMNKMLVKDIRHLLVIDESNNEFIGMISIKDLIKEIMKDKNDIITRLTDLTTGK 163          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L450_9PHAE8.240e-7881.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG6_ECTSI1.050e-5780.34CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZG49_9STRA4.490e-5659.73CBS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1XTH5_9STRA1.630e-4953.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U998_9STRA2.840e-4853.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YGF7_9STRA5.200e-4752.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UAT3_9STRA4.390e-4656.03Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6T9YKC1_9STRA6.960e-4243.09Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A1Z5KQF6_FISSO1.170e-4154.36CBS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A6C0DQH1_9ZZZZ2.100e-4047.97CBS domain-containing protein n=1 Tax=viral metage... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:192935..197296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXG6
PFAMsCBS
Model size1504
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Exons5
Evalue1.11e-61
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
Ec32 ortholog descriptionCBS domain
Ec32 orthologEc-07_003160.1
DescriptionDomain in cystathionine beta-synthase and other proteins.
Cds size642
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.17.1prot_A-nodosum_M_contig103.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig103 193537..197036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866394.3811874-UTR-A-nodosum_M_contig103:192934..1935361680866394.3811874-UTR-A-nodosum_M_contig103:192934..193536Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 192935..193536 -
1680866394.4410536-UTR-A-nodosum_M_contig103:197036..1972961680866394.4410536-UTR-A-nodosum_M_contig103:197036..197296Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 197037..197296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866394.391018-CDS-A-nodosum_M_contig103:193536..1936111680866394.391018-CDS-A-nodosum_M_contig103:193536..193611Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 193537..193611 -
1680866394.4003716-CDS-A-nodosum_M_contig103:194206..1943621680866394.4003716-CDS-A-nodosum_M_contig103:194206..194362Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 194207..194362 -
1680866394.4124253-CDS-A-nodosum_M_contig103:194635..1947101680866394.4124253-CDS-A-nodosum_M_contig103:194635..194710Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 194636..194710 -
1680866394.424018-CDS-A-nodosum_M_contig103:195444..1955901680866394.424018-CDS-A-nodosum_M_contig103:195444..195590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 195445..195590 -
1680866394.4324305-CDS-A-nodosum_M_contig103:196846..1970361680866394.4324305-CDS-A-nodosum_M_contig103:196846..197036Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 196847..197036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig103.17.1

>prot_A-nodosum_M_contig103.17.1 ID=prot_A-nodosum_M_contig103.17.1|Name=mRNA_A-nodosum_M_contig103.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=214bp
MIRNVVRTLGRAGATSLKTAQHSQAPPSVSRGLQGAVLEVATGRGPSAPG
KGLRGFSGTAADDGVRTAQHAWEKSCYFNIDYKIDENDTVHDAISRMSAY
NVGCLIVTKNGVVSGIISERDYVCKVSLLGRQSKDTKVKEICTQGQKMIV
AKRSDTLETCVEKMITAGIRHLPVIDDDTGELFGLISVKDLVKEYIKDRD
HLICKMLGLPTSS*
back to top

mRNA from alignment at A-nodosum_M_contig103:192935..197296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig103.17.1 ID=mRNA_A-nodosum_M_contig103.17.1|Name=mRNA_A-nodosum_M_contig103.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4362bp|location=Sequence derived from alignment at A-nodosum_M_contig103:192935..197296- (Ascophyllum nodosum dioecious)
GAAATTTTGAAGGCGTAGCATTGAGCCCACAAGTAGGTTCTTGTGTGTCT GCCTGTACCTTCGTCGCTTCTGTGTTGTCGGTGAGATGCGAGGGTACCCT GTAGAGCCGAATTTACTATAGGTACAGCGCCGCGCGCATAAATTCCCTCT ACGAACCTCAAGACGGCCAGCAATAATCGCGGAACACTCCATGATGAGAT TCTGTCGACTCCTTCCCGAATCTTGCACCTGCGTTTAACAGACAACTACA CACGTCAACTATGATCCGCAACGTCGTGCGCACGCTTGGGCGAGCTGGTG CAACCTCTTTGAAGACGGCGCAGCACTCCCAGGCTCCGCCCTCGGTATCG AGGGGGTTGCAAGGAGCGGTGTTGGAAGTTGCCACTGGAAGGGGCCCATC TGCTCCGGGCAAGGGATTGCGAGGGTTCAGCGGAACTGCGGCGGACGACG GTGGGTGACTTTAATCTGTCGATCGGGGTATGGTACAGACATCATTTTAT AGGCGTGTGTGCTTCGAGAAGACGACGGAATGAAAAATCGTGGTTCCTAA GATAAGACCTTGGTTCTTAAATTGCGCGAAGTGGTCAACAGTAGTGCCTT ATCATTCCCCACGTACAGTATCGTGTATACTCCGTAGTATGTCTGCTGTC TCTAGGTCTTGATTTTGCCAACTATTTCCCTATTGACTACCAGGTAATCA TTACTGTGGGATGATCAAATTCTTCATTTCAGTGCGCGAATTCGGCTCCA ACCTACAGTAGCACAAACACCGAAGCGGGATGCTCTCTGTGCACATATTT TTGCCTTGCAAGCCGAGAGGGATCCTCCCGAGCACGCCGAGACAGGCAGT ACTGGTAATTGTACGAGTAGTTCGTTTCGTGGATGGTTTTGCGCAACCCT TCGTCATACATCAAATCTCCTCGACAGCAATGTAAACATGTACCCTCTAC AATAAATTTATTTATTGCTATAGAGTATAATTGTCTTCCGATTTTCGTGG TACTTTGAACTGCGTACTGTGTTGAAGTTTGTAAAAAAAGTCGTCAAAAT GATGTAATAACCTTTGCGATATCGCACACATTACCACCCTCTAAGTACAG TACAACGTTTCAAAAGCGTTTTTACTTCTCAGCTGGCAGTCTTGGCATCC CCACACGCCACATGGGCGATTGTTGGTGAAACTTGCTTGCTTGAAACCGT CAAGGCCACTGAGCCGTGGGTTTTAGGTTCATCTGGCTGACGCCTTGGTA AGGCGTTCGGGCCCCAACGCTGTATATGCCTTAGCGTGAAAATCCCTGGA CGAGTTGTCTCCGAGGCTTCTCCGAATCGAATATAATTACAACAGCTTAT TCCGGTCGCAGGAACCTTTAATTGGGACGCCAAAATAAGGTGGCGTTAAG AGAAAAATCTTAATCCATACAAACATACCTACTTTTAGGAATTGCGTTCC AAACGTTCGGCCCACGTTACTACTTGTTGTAGCCGATTGCATGCCGTGAC GGCCTCGTTCGGTTGTTCATGGCACTTTTGGGCTCCATTTTGCGAACTCC TGCTGCGGCGACCCTAAGCACCTTATTGTAGCTTTCGCTCAGGAGCTTTC CGCCCTCGCCGCCAGATCCGCGCAGCAGAGTCCTAATTGTACCTTCTGAT TTGCCATCTATGTCGATCGTTGAACGGTACCGCTGTTAATATTAATATAT TAATAGGCGTGCGTACCGCGCAACACGCGTGGGAGAAGTCGTGCTACTTC AACATCGACTACAAGATCGATGAGAACGACACGGTTCACGACGCCATCAG CCGAATGTCGGCTTACAACGTTGGATGCCTCATCGTCACCAAGAACGGCG TGGTGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGTAACGCCTCATTA CACTATGTATTCATAACTCATTTCATAGTATAGTTTATAATGAATCGTAC TTCTGGAGTAACGGTCGTTAGAGAGTAATTTGCTACACGAGCCTGACAAA AAAAAAACTATGAACAGGTAAAGGTGGTTGTGCTGCTGAAGAGAAACACG GCACTAAGAAATCAGTCTAAGATTTGTGGGTGGACTAGATCTACAATAAG GCGGTAAGAGATAAGCCAGATCTGTGAGATACCTCAACTGCTATGAATAG GTGTACAGACCTGTGGTGGGAGGCGCCCGGGGCGCGCGATCACGCCTTCG TTCAGCTCACGCTTTAGAGCTTCTCCCTCTCACGGCGTGGGATGCATGTC TCTCGCCATGCACAATCTCACAAGGTCGGATACAAGCGCACGTTTGTGTT TCGTTCCGCCGCTCGTCCTGAAAAATCTTGTGCCGCGGTCCATCGCGCTA TGGGTGGGTTTCAGAGATGCAACCCTTGTCATTGTCAAGCACACCTCACG TCAACGTCGACCTTTCCCCCATACAAGCCTCTCAACCGTGTTCTGTAGCT TCGGAGACTGCTGTGCTTGTGCTCGCTACCGTATCAGCGCTCTGCATCTC CACAAAACAAAAAACAAAAATCGTGGGTACCGCTCTTTTTCTAACCGCGC GCTATCGTGTGACTTTGATTGATCGGTCCTGAGCAGGTTTCGGGGATCAT ATCAGAGCGCGACTACGTGTGCAAAGTGTCGCTGCTGGGCAGGCAATCGA AGGACACAAAGGTGACCACTACCCTCTCTTCTGGCGTTAGCCTCGTTCTT CTTTCCCAAGTACTGGTACCGCCGTTCTAGACGCGAGTTTGGTTATGTAA TCGAGACGGTGGGCGATTGAGCGGTGCCGCCGGTGCGACTTTGTTTTTTT TGCGTTCGCGAGCAGTATGTACTCAAAACACACAAACGTGGGTGAAAATG TCCTGTAGTCTGTGGGGGTGGCCTGGCCCCGACTCGAGTTTGTTTCGCCT TGGGGGGGGGGCGCTCGAGGGACCTGCCGTATAGGTGAAGGAAATTTGCA CCCAGGGACAGAAAATGATAGTGGCGAAGCGCTCTGACACGCTCGAGACG TGCGTCGAAAAGATGATCACCGCCGGCATCCGGCACCTGCCGGTGATCGA CGACGACACTGGCGAGCTGTTCGGCCTCATCTCGGTTAAGGTGAGTTGCG CTAGACGCTAAACTAAATCACCAGCTCCACACTGCTAGAGTTAAACTGCC TTGGTAGTTGGTTGCTTTTGTTGGTACTGGGTGATGGCACCCGCATTCAA CCCCGCTATGGCGACAAAACGCCTACCAGTATACATAACGGCTACATTCA TTGCTGGTGGCAGCGGTTGTGGCTTAATACACGCGCAGCACCGCGAGTAG TAGTAATGCGCTGAGAGTGAATGGCGAGGTAGGGAGTGAGCGATGGGTCG CAGGACAGTCGCAGCATCCTTAAAAAGGTGCGGCCACTCGGCGCAGCCAT CGCCCGTACAACACATGTAGCTGCATCTTACTGCGGTGTTTTGAAGCAGC AGCGATATATTTACTCCGATTCTCATCGCGGCGGGTGTAGGAATGAGCTA CAGCAGCACCATCTCCCCCCTCCAAAAAACCTAGGAAGATGTGTACAGAT CCCACTAATTACAATTTGCGCAGAGGAAAACGGTGTCGGCCGGGCCTTTC CTCCTAGACGGTAATGAGTTAAACCGTTCATATTTTTGACCTCAAGAGTA TGCTCCTCGATCCACGTTGCGGCCGCCCTCGGCAGGATCTCGTCAAGGAG TACATCAAAGATAGGGATCACCTGATCTGCAAAATGCTCGGACTCCCGAC GTCCTCCTGAATCTGCTGTAACCAAGATTTTCGGTGGCTCGAGGGTCGCT GTTGATTGTTTCCTCGCGGCTCTTCCGCCGGAATGGATGTCGTTCGAGCT CTTACGCCAAAAAGCTGGGCAGGGAGAGATAAGGGGTGCGGGCGTTACGC GACGTTGTATGGTGGCCGCGTTTTTTTTTACACCGTTGGCCTTGGCTACC TCCACGGCAAGTGACTATATACAGCTAGCTAGACCACTGCTGTTTCGGAG GATCCCCGCTTTCTGTTTTTACCCTTTTCTGTTGCGGCCTTGTTTTCTTG CACAGGGTGTAAATGCCGAGTTCGCATGCTTCTGGGGTGAGCGGCTCGAA CCGTTGCGAAGGAGACAGCGTCAGGCGTTTTTGCCAGACTTTTGAGTGTT TTGGTGCGTACCCAGTCGCGCACCACAGACGCATAGAGGTTTGGTGCTTG TTCTGTTTTAATTGATCAGTGCAGCTGGCAATCATGCATATATGCGTCAC ATAGTTTTGCACAAGAGGTCCGCCAAGGATCTTTCCGGTTTATTACTTGC ACCGCTATTAAGAAAAAGACGGACCCCTGCGCGGCTGAAATCCGTTCACG CGGTATTTATGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig103:192935..197296-

>mRNA_A-nodosum_M_contig103.17.1 ID=mRNA_A-nodosum_M_contig103.17.1|Name=mRNA_A-nodosum_M_contig103.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at A-nodosum_M_contig103:192935..197296- (Ascophyllum nodosum dioecious)
ATGATCCGCAACGTCGTGCGCACGCTTGGGCGAGCTGGTGCAACCTCTTT
GAAGACGGCGCAGCACTCCCAGGCTCCGCCCTCGGTATCGAGGGGGTTGC
AAGGAGCGGTGTTGGAAGTTGCCACTGGAAGGGGCCCATCTGCTCCGGGC
AAGGGATTGCGAGGGTTCAGCGGAACTGCGGCGGACGACGGCGTGCGTAC
CGCGCAACACGCGTGGGAGAAGTCGTGCTACTTCAACATCGACTACAAGA
TCGATGAGAACGACACGGTTCACGACGCCATCAGCCGAATGTCGGCTTAC
AACGTTGGATGCCTCATCGTCACCAAGAACGGCGTGGTTTCGGGGATCAT
ATCAGAGCGCGACTACGTGTGCAAAGTGTCGCTGCTGGGCAGGCAATCGA
AGGACACAAAGGTGAAGGAAATTTGCACCCAGGGACAGAAAATGATAGTG
GCGAAGCGCTCTGACACGCTCGAGACGTGCGTCGAAAAGATGATCACCGC
CGGCATCCGGCACCTGCCGGTGATCGACGACGACACTGGCGAGCTGTTCG
GCCTCATCTCGGTTAAGGATCTCGTCAAGGAGTACATCAAAGATAGGGAT
CACCTGATCTGCAAAATGCTCGGACTCCCGACGTCCTCCTGA
back to top