mRNA_A-nodosum_M_contig1029.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31) HSP 1 Score: 125 bits (315), Expect = 3.330e-33 Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 1 Query: 13 EKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 EKEEM+ PY+EAVGAL++ +T TRPDI+ AV VA+F +NPG H KAV +I +Y+ T+ +GI Y Q G + YTD+D+G LD R S SG VL+ + G+ISW SR QE T+ T+E+E+V Sbjct: 28 EKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYS-QEKGEMVTGYTDADYGGDLDDRTSTSGCVLLCSSGSISWFSRKQECTSLSTTESEFV 152
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A8H6Y342_9AGAR (Transcription factor n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6Y342_9AGAR) HSP 1 Score: 122 bits (305), Expect = 2.380e-31 Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 25 MRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 M++ PYREAVG+LMW A TRPDIA V ++++ NPGPTH +AV ++F+YL TK+W + YG GL + Y+D+D G + RR++SG ++ GAISW S+ QEL T+EAEYV Sbjct: 72 MKRIPYREAVGSLMWAAVGTRPDIAFVVGVLSKYLNNPGPTHWEAVKRVFRYLQGTKDWRLTYGAGKAGL--EGYSDAD-GMSQENRRAISGYAFIIDGGAISWSSKKQELVTLSTTEAEYV 190
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB) HSP 1 Score: 119 bits (297), Expect = 1.460e-30 Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1 Query: 4 NPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 N EEK M++ PYREAVG LM+ A +TRPDI AV V+RF NPG H KAV +I +Y+ TK GI+Y G + AY+D+DF +DTRRS +G + ++A G + W S Q+ + T+EAEYV Sbjct: 25 NDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSH--IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYV 151
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A5B7BVE6_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BVE6_DAVIN) HSP 1 Score: 115 bits (289), Expect = 8.290e-30 Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 +N E+++M+ PY AVG+LM+ T TRPDI+ AV + RF NPG H KA K+ +YL TK++ + Y + L + Y+DSDF CLD+R+S SG V +LA GAISW S Q + AS T EAE+V Sbjct: 41 KNDLERQQMKDIPYASAVGSLMYAQTCTRPDISFAVGMLGRFQSNPGMEHWKAAKKVMRYLQGTKDYMLTYR-RSDQLDVIGYSDSDFAGCLDSRKSTSGFVFLLASGAISWKSVKQSIIASSTMEAEFV 169
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI) HSP 1 Score: 118 bits (295), Expect = 1.830e-29 Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 RN E+E+M+K PY AVG+LM+ T TRPDI+ AV + R+ +PG H KA K+ +YL TK++ + Y + L + Y+D D+G CLD+ +S SG V MLA GAISW S Q +TAS T EAE+V Sbjct: 110 RNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 238
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A438EZX7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZX7_VITVI) HSP 1 Score: 117 bits (292), Expect = 2.140e-29 Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 RN E+E+M+K PY VG+LM+ T TRPDI+ AV + R+ +PG H KA K+ +YL TK++ + Y + L + Y+DSD+G CLD+ +S SG V MLA GAISW S Q +TAS T EAE+V Sbjct: 64 RNNMEREQMKKIPYASVVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVDYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 192
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO) HSP 1 Score: 120 bits (302), Expect = 3.380e-29 Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 +N E+E M+ PY AVG+LM+ TRPDIA AV + R+ NPG H KA K+ +YL TK++ + Y C L + Y+DSDF C+D+RRS SG + MLA GA+SW S Q LTA+ T EAE+V Sbjct: 1332 KNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFV 1460
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO) HSP 1 Score: 120 bits (302), Expect = 3.430e-29 Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 +N E+E M+ PY AVG+LM+ TRPDIA AV + R+ NPG H KA K+ +YL TK++ + Y C L + Y+DSDF C+D+RRS SG + MLA GA+SW S Q LTA+ T EAE+V Sbjct: 2106 KNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFV 2234
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A151QLV5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLV5_CAJCA) HSP 1 Score: 118 bits (295), Expect = 5.940e-29 Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 +N E+E M+ PY AVG+LM+ TRPDIA AV + R+ NPG H KA K+ +YL TK++ + Y L + Y+DSDF C+DTR+S SG V MLA GA+SW SR Q LTA+ T EAE+V Sbjct: 190 KNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKDFMLIYRRTD-SLEVIGYSDSDFAGCIDTRKSTSGYVFMLACGAVSWSSRKQTLTATSTMEAEFV 318
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 119 bits (297), Expect = 7.370e-29 Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 1 Query: 1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390 RN E+E+M+K PY AVG+LM+ T TRPDI+ AV + R+ +PG H KA K+ +YL TK++ + Y + L + Y+DSD+G CLD+ +S SG V MLA GAISW S Q +TAS T EAE+V Sbjct: 280 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 408 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1029.1.1 >prot_A-nodosum_M_contig1029.1.1 ID=prot_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=122bp MRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFback to top mRNA from alignment at A-nodosum_M_contig1029:154492..154881- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1029.1.1 ID=mRNA_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:154492..154881- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1029:154492..154881- >mRNA_A-nodosum_M_contig1029.1.1 ID=mRNA_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:154492..154881- (Ascophyllum nodosum dioecious)back to top |