mRNA_A-nodosum_M_contig1028.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1028.12.1
Unique NamemRNA_A-nodosum_M_contig1028.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1028.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1028contigA-nodosum_M_contig1028:180367..181028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.00469-CDS-A-nodosum_M_contig1028:180366..1809061680866393.00469-CDS-A-nodosum_M_contig1028:180366..180906Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1028 180367..180906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.016937-UTR-A-nodosum_M_contig1028:180906..1810281680866393.016937-UTR-A-nodosum_M_contig1028:180906..181028Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1028 180907..181028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1028.12.1prot_A-nodosum_M_contig1028.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1028 180367..180906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1028.12.1

>prot_A-nodosum_M_contig1028.12.1 ID=prot_A-nodosum_M_contig1028.12.1|Name=mRNA_A-nodosum_M_contig1028.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp
MGGGEGREGVRLDRGLTRWPRTCPRPPAWRGDGDRGRTRRVSLTGGRERE
RRGVDSPQKIALSDGKPDRVLPRLLTGPASPADGCRGGGGGGGGDEDYWG
CGLLVSYIIDSISWVLLWRGYYLTRIPGAAASWYRILSILSHGLLLLRVL
SDEDYWGCGLLVSHIIGTISRVTVLGGII*
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mRNA from alignment at A-nodosum_M_contig1028:180367..181028-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1028.12.1 ID=mRNA_A-nodosum_M_contig1028.12.1|Name=mRNA_A-nodosum_M_contig1028.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=662bp|location=Sequence derived from alignment at A-nodosum_M_contig1028:180367..181028- (Ascophyllum nodosum dioecious)
GAAGAGAGGGTGGGGTGAGTAGGGAGAGGGCGGGGTGGAAGGCCGAGAAG
GAGAGAGGGAGGAATATGTGTAGCCTTTGGCGTTGTGTCGGATGGGGTAA
TGCACGGGCGGTCGGGTAATGGATGGGGGGGGGGGAGGGGCGCGAGGGCG
TTCGCCTGGACCGGGGGTTGACGCGTTGGCCGCGGACTTGCCCTCGGCCG
CCGGCATGGAGGGGGGATGGTGATCGAGGACGTACCCGACGCGTGTCTTT
GACTGGAGGAAGAGAAAGGGAGAGACGTGGCGTAGATTCCCCGCAAAAGA
TCGCTTTGAGCGATGGAAAACCTGACCGAGTCCTGCCTCGCCTGCTGACG
GGTCCTGCCTCGCCTGCTGACGGGTGTAGGGGTGGTGGTGGTGGTGGTGG
TGGTGACGAGGATTACTGGGGGTGCGGCCTCCTGGTATCGTATATTATCG
ATTCTATCTCTTGGGTACTACTTTGGAGGGGGTATTATCTGACGAGGATT
CCTGGGGCTGCGGCCTCCTGGTATCGCATATTATCGATACTATCTCACGG
GTTACTACTTTTGAGGGTATTATCTGATGAGGATTACTGGGGGTGCGGCC
TCCTGGTGTCGCATATTATCGGTACTATCTCACGGGTCACTGTTTTGGGG
GGTATTATCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1028:180367..181028-

>mRNA_A-nodosum_M_contig1028.12.1 ID=mRNA_A-nodosum_M_contig1028.12.1|Name=mRNA_A-nodosum_M_contig1028.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig1028:180367..181028- (Ascophyllum nodosum dioecious)
ATGGGGGGGGGGGAGGGGCGCGAGGGCGTTCGCCTGGACCGGGGGTTGAC
GCGTTGGCCGCGGACTTGCCCTCGGCCGCCGGCATGGAGGGGGGATGGTG
ATCGAGGACGTACCCGACGCGTGTCTTTGACTGGAGGAAGAGAAAGGGAG
AGACGTGGCGTAGATTCCCCGCAAAAGATCGCTTTGAGCGATGGAAAACC
TGACCGAGTCCTGCCTCGCCTGCTGACGGGTCCTGCCTCGCCTGCTGACG
GGTGTAGGGGTGGTGGTGGTGGTGGTGGTGGTGACGAGGATTACTGGGGG
TGCGGCCTCCTGGTATCGTATATTATCGATTCTATCTCTTGGGTACTACT
TTGGAGGGGGTATTATCTGACGAGGATTCCTGGGGCTGCGGCCTCCTGGT
ATCGCATATTATCGATACTATCTCACGGGTTACTACTTTTGAGGGTATTA
TCTGATGAGGATTACTGGGGGTGCGGCCTCCTGGTGTCGCATATTATCGG
TACTATCTCACGGGTCACTGTTTTGGGGGGTATTATCTGA
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