mRNA_A-nodosum_M_contig10279.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10279.4.1
Unique NamemRNA_A-nodosum_M_contig10279.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10279.4.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.450e-10
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = -1 
Query:  169 PDRPHVTEATFFWRYVSEHDLKEIMKRLAHLLVPSELERSGVDAITNIFITEASDTLRTNPVEPQCPMGYTMRMRGTETRELLDRYANILCAR 447
            PDRPH+TE  FFWRY+S   +  + +R+  +L+P+ ++R+GV+ + +  I   S TL+    E   PMG  M  RG     L   +  +L AR
Sbjct:  132 PDRPHITEQRFFWRYISAVQMIALFERVTEVLLPNPVDRAGVNGLLHERIHSVSTTLQKLRQESHHPMGDHMSHRGKVAESLFREFVAVLSAR 224
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BLAST of mRNA_A-nodosum_M_contig10279.4.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.380e-8
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = -1 
Query:  169 PDRPHVTEATFFWRYVSEHDLKEIMKRLAHLLVPSELERSGVDAITNIFITEASDTLRTNPVEPQCPMGYTMRMRGTETRELLDRYANILCAR 447
            PDRPHVTE  FFWRY+S   +  + + +  +L+P+ ++ +GV+ + +      S TL+    E   PMG+ MR R T    L   +  +L AR
Sbjct:  301 PDRPHVTEQRFFWRYISAVQMIALFEGVTEVLLPNPVDGAGVNGLLHERTHSISTTLQKLRQESHNPMGHHMRHRRTVAEGLFHEFVAVLSAR 393
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10279.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8L9_9PHAE4.450e-1036.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF6_9PHAE1.380e-835.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10279contigA-nodosum_M_contig10279:5053..5580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size528
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.90388-UTR-A-nodosum_M_contig10279:5052..51441680866392.90388-UTR-A-nodosum_M_contig10279:5052..5144Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10279 5053..5144 -
1680866392.9769673-UTR-A-nodosum_M_contig10279:5546..55801680866392.9769673-UTR-A-nodosum_M_contig10279:5546..5580Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10279 5547..5580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.914796-CDS-A-nodosum_M_contig10279:5144..55461680866392.914796-CDS-A-nodosum_M_contig10279:5144..5546Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10279 5145..5546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10279.4.1prot_A-nodosum_M_contig10279.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10279 5145..5546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10279.4.1

>prot_A-nodosum_M_contig10279.4.1 ID=prot_A-nodosum_M_contig10279.4.1|Name=mRNA_A-nodosum_M_contig10279.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MDSLASRNSCRSSAFLAAWSDGVLWLLRAAMCVRELNFRLLLRGLRAHRM
FAYRSRSSRVSVPLMRMVYPMGHCGSTGFVRSVSLASVIKMFVMASTPER
SNSEGTSRCAKRFMISFRSCSLTYLQKKVASVT*
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mRNA from alignment at A-nodosum_M_contig10279:5053..5580-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10279.4.1 ID=mRNA_A-nodosum_M_contig10279.4.1|Name=mRNA_A-nodosum_M_contig10279.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig10279:5053..5580- (Ascophyllum nodosum dioecious)
GGGGTCGAGGAATCGTGCCCGGTCAGGCGATGAAATGGATTCTTTAGCGT
CGCGTAACAGTTGTCGGAGTTCTGCATTCTTGGCCGCGTGGTCTGACGGT
GTGCTGTGGTTGCTTAGAGCTGCGATGTGTGTGCGTGAGCTAAACTTTCG
CTTGTTGTTGCGTGGTCTGCGCGCGCACAGAATGTTTGCGTATCGGTCGA
GGAGTTCACGGGTCTCCGTTCCCCTCATGCGCATGGTGTACCCCATGGGG
CATTGCGGTTCGACTGGGTTTGTGCGAAGTGTATCGCTGGCTTCCGTGAT
AAAAATGTTTGTGATGGCATCTACACCGGAACGCTCCAACTCCGAGGGGA
CGAGTAGGTGCGCTAAACGCTTCATGATCTCTTTTAGGTCGTGTTCGCTG
ACATACCTCCAGAAAAAGGTCGCTTCGGTTACATGAGGGCGGTCTGGGGT
GGAACGGTTTGCTACCCTTTGGGGAATACATGGCGAGTTCGGGACTACTT
AGATTAGCAAGCCCGCGTTTTTCAAAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10279:5053..5580-

>mRNA_A-nodosum_M_contig10279.4.1 ID=mRNA_A-nodosum_M_contig10279.4.1|Name=mRNA_A-nodosum_M_contig10279.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig10279:5053..5580- (Ascophyllum nodosum dioecious)
ATGGATTCTTTAGCGTCGCGTAACAGTTGTCGGAGTTCTGCATTCTTGGC
CGCGTGGTCTGACGGTGTGCTGTGGTTGCTTAGAGCTGCGATGTGTGTGC
GTGAGCTAAACTTTCGCTTGTTGTTGCGTGGTCTGCGCGCGCACAGAATG
TTTGCGTATCGGTCGAGGAGTTCACGGGTCTCCGTTCCCCTCATGCGCAT
GGTGTACCCCATGGGGCATTGCGGTTCGACTGGGTTTGTGCGAAGTGTAT
CGCTGGCTTCCGTGATAAAAATGTTTGTGATGGCATCTACACCGGAACGC
TCCAACTCCGAGGGGACGAGTAGGTGCGCTAAACGCTTCATGATCTCTTT
TAGGTCGTGTTCGCTGACATACCTCCAGAAAAAGGTCGCTTCGGTTACAT
GA
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