mRNA_A-nodosum_M_contig10278.5.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10278.5.2
Unique NamemRNA_A-nodosum_M_contig10278.5.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A0A835YQ71_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ71_9STRA)

HSP 1 Score: 164 bits (415), Expect = 6.770e-46
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            A NM +F+ LYG +  + +P+V  ++S +RVIT+EWIDG K+VN +A+VSP DL  L+VGI CTL QLLDKGFLHADPHGGNLLK    KLAYLDFGLVS IP  VMD +ICAT+H+MNR
Sbjct:  253 ARNMRKFQRLYGHLDGIYIPQVYEEFSARRVITTEWIDGTKVVNERAKVSPNDLALLQVGIQCTLMQLLDKGFLHADPHGGNLLKTPSGKLAYLDFGLVSDIPASVMDTIICATVHLMNR 372          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A9BL31_HEMAN (Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL31_HEMAN)

HSP 1 Score: 137 bits (344), Expect = 4.750e-35
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            + NMI+FR LYG M ++ +PRV L+YS + V+  EWI+G++LV   A+    D+  + +G+ C+L QLL+ GFLH DPHGGNL+K  D KLAYLDFGLVS IP  +  +LI A L+++NR
Sbjct:  456 SSNMIKFRSLYGYMEMLYIPRVFLEYSSKHVLVMEWIEGDRLVKNSAKAMQEDVSLIEIGVRCSLVQLLETGFLHCDPHGGNLIKTKDGKLAYLDFGLVSEIPETIRYSLISAILNLINR 575          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A0A7S2ZE39_9RHOD (Hypothetical protein n=8 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZE39_9RHOD)

HSP 1 Score: 134 bits (338), Expect = 3.120e-34
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            ++NM +F+ LYG++  + VP+V  KYS   V+T EW++G++L+   A V   D+P +  GI C LTQ+LD GFLHADPH GNL++  D +LAYLDFGL+STIP  V D+ +   LH++NR
Sbjct:  389 SKNMAQFKLLYGNIKGIYVPKVFTKYSTAHVLTMEWVEGQRLITDSASVKLQDVPLVEAGIRCCLTQMLDVGFLHADPHAGNLIRTRDGQLAYLDFGLMSTIPDNVRDSFLITILHLINR 508          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A0A7J7IQA4_9RHOD (Protein kinase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQA4_9RHOD)

HSP 1 Score: 132 bits (332), Expect = 2.030e-33
Identity = 61/121 (50.41%), Postives = 87/121 (71.90%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMAD-EKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            AENM RFR+LYGS+P + VP V  +YS   V+T EW++G +L++  A V   D+P +++GI C+L QL++ GFLHADPH GNLL   D  +L YLD+GL+S +P  V  ++ICA +H++NR
Sbjct:  398 AENMRRFRQLYGSLPGIYVPEVYPEYSSAHVLTMEWVNGRRLIDETATVRRDDIPLIKLGILCSLMQLMETGFLHADPHTGNLLVTEDGSRLVYLDYGLMSEVPQSVQLSIICAVVHLINR 518          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: M2XY29_GALSU (AarF domain-containing kinase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY29_GALSU)

HSP 1 Score: 132 bits (331), Expect = 2.720e-33
Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVM 356
            + NMIRF++LYG +P + +P V  +YS +R++  EWIDG+K+VN    +   D   + +GI  +L QLL+ GFLHADPHGGNL++M D +LAYLDFGLVS +P  +M ++IC   H+M
Sbjct:  444 SSNMIRFQKLYGDIPGIYIPSVFQEYSTRRILVMEWIDGQKIVNEGNFIRKEDAALVEIGIQFSLKQLLETGFLHADPHGGNLVRMKDGRLAYLDFGLVSHVPEAMMYSMICTFFHLM 561          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: M1UVS6_CYAM1 (Protein kinase domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UVS6_CYAM1)

HSP 1 Score: 132 bits (331), Expect = 2.790e-33
Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMAD-EKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            A+NM RFR+LYGS+P + VP V  +YS   V+T EW++G +L++  A V   D+P +++GI C+L QL++ GFLHADPH GNLL   D  +LAYLD+GL+S +P  V  ++ICA +H++NR
Sbjct:  639 AKNMHRFRQLYGSLPGIYVPEVYPEYSSAHVLTMEWVNGRRLIDDTATVRREDIPLIKLGILCSLMQLMEAGFLHADPHTGNLLVTEDGTRLAYLDYGLMSEVPQSVQLSIICAVVHLINR 759          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: D7FNM6_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM6_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.930e-33
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVST 305
            A+NM++FRELY +MP ++VP+VLL YS +RVITSEWIDGEKLV+ QAQVSPADLP LRVGI+CTLTQLLDKGFLHA       L++ D++  Y   G VST
Sbjct:  259 AQNMVQFRELYHAMPGILVPKVLLDYSAKRVITSEWIDGEKLVDNQAQVSPADLPILRVGIECTLTQLLDKGFLHAQD-----LEVKDKERTY---GRVST 351          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: J7G6I5_9CRYP (ABC1 family protein n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G6I5_9CRYP)

HSP 1 Score: 130 bits (327), Expect = 9.400e-33
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:    3 AENMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            + NMI+FR LYG M ++ +PRV ++YS + V+  EW++GE+LV    +    D+  + +G+ C+L QLL+ GFLH DPHGGNL+K  + +LAYLDFGLVS IP  V  + I A L+++NR
Sbjct:  462 SSNMIKFRSLYGYMDMIYIPRVFVEYSSKHVLVMEWVEGERLVKHSVKSMQEDVSLIEIGVRCSLVQLLETGFLHCDPHGGNLVKTKNGRLAYLDFGLVSEIPETVRFSFISAILNLINR 581          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A0A7S0PNH3_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PNH3_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 2.200e-32
Identity = 71/132 (53.79%), Postives = 91/132 (68.94%), Query Frame = 3
Query:    3 AENMIRFRELYGS---------MPLVVVPRVLLKYS-GQRVITSEWIDGEKLVNAQAQ-VSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICA-TLHVMNR 362
            A N+++F ELYG           P VVVPR++ KY  G+RVI  EWIDGEKL   + + VS  DL  +++GI CTL+QL++ GF+HADPHGGNLLK+AD  LAYLDFGLVST+P  V D L+ A  L + +R
Sbjct:  180 ARNLVKFAELYGKGGSAAKSLPPPGVVVPRLIDKYGVGRRVIVMEWIDGEKLTAGKNRAVSTDDLKYVKLGIMCTLSQLIETGFMHADPHGGNLLKLADGGLAYLDFGLVSTVPQQVRDGLVAAIALLIFSR 311          
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Match: A0A6T6CQ29_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CQ29_9RHOD)

HSP 1 Score: 128 bits (322), Expect = 3.790e-32
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 3
Query:    9 NMIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPADLPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIPPGVMDALICATLHVMNR 362
            N+ +FR LYG M  + VP+V  +Y+   V+  EW+ GEKL +  A +   D+  + +GI C+LTQLL+KGFLHADPH GNLL+  D +LAY+DFG VS +P  VM  ++ A LH++NR
Sbjct:  226 NIAKFRNLYGGMKRIYVPQVFQEYTTTHVLVMEWVVGEKLFDENAGIRKDDIELVELGIACSLTQLLEKGFLHADPHAGNLLRTNDGRLAYIDFGAVSVVPESVMQCILRAILHLVNR 343          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10278.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ71_9STRA6.770e-4665.00ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A9BL31_HEMAN4.750e-3551.67Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=4649... [more]
A0A7S2ZE39_9RHOD3.120e-3450.00Hypothetical protein n=8 Tax=Rhodosorus marinus Ta... [more]
A0A7J7IQA4_9RHOD2.030e-3350.41Protein kinase domain-containing protein n=1 Tax=C... [more]
M2XY29_GALSU2.720e-3350.00AarF domain-containing kinase n=1 Tax=Galdieria su... [more]
M1UVS6_CYAM12.790e-3350.41Protein kinase domain-containing protein n=1 Tax=C... [more]
D7FNM6_ECTSI3.930e-3366.34ABC transporter-like n=1 Tax=Ectocarpus siliculosu... [more]
J7G6I5_9CRYP9.400e-3348.33ABC1 family protein n=1 Tax=Chroomonas mesostigmat... [more]
A0A7S0PNH3_9CHLO2.200e-3253.79Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A6T6CQ29_9RHOD3.790e-3249.15Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10278contigA-nodosum_M_contig10278:9072..10402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog130081.XP_005705068.1
PFAMsABC1,APH,DCP2,NUDIX
Model size362
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.76e-33
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size351
COG categoryE
BRITEko00000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.6262877-UTR-A-nodosum_M_contig10278:9071..90821680866392.6262877-UTR-A-nodosum_M_contig10278:9071..9082Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10278 9072..9082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.6400087-CDS-A-nodosum_M_contig10278:9082..91961680866392.6400087-CDS-A-nodosum_M_contig10278:9082..9196Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 9083..9196 +
1680866392.6485097-CDS-A-nodosum_M_contig10278:9590..96951680866392.6485097-CDS-A-nodosum_M_contig10278:9590..9695Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 9591..9695 +
1680866392.6602602-CDS-A-nodosum_M_contig10278:9881..99351680866392.6602602-CDS-A-nodosum_M_contig10278:9881..9935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 9882..9935 +
1680866392.6700082-CDS-A-nodosum_M_contig10278:10324..104021680866392.6700082-CDS-A-nodosum_M_contig10278:10324..10402Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 10325..10402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10278.5.2prot_A-nodosum_M_contig10278.5.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10278 9083..10402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10278.5.2

>prot_A-nodosum_M_contig10278.5.2 ID=prot_A-nodosum_M_contig10278.5.2|Name=mRNA_A-nodosum_M_contig10278.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MIRFRELYGSMPLVVVPRVLLKYSGQRVITSEWIDGEKLVNAQAQVSPAD
LPTLRVGIDCTLTQLLDKGFLHADPHGGNLLKMADEKLAYLDFGLVSTIP
PGVMDALICATLHVMNR
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mRNA from alignment at A-nodosum_M_contig10278:9072..10402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10278.5.2 ID=mRNA_A-nodosum_M_contig10278.5.2|Name=mRNA_A-nodosum_M_contig10278.5.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1331bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:9072..10402+ (Ascophyllum nodosum dioecious)
AGGCGGAAAACATGATTCGGTTCCGAGAGCTTTACGGATCGATGCCGCTA GTGGTGGTGCCAAGAGTGCTCCTAAAATACAGCGGGCAGAGGGTGATAAC ATCAGAGTGGATCGACGGGGAGAAGGTAAAAGAGGCGTCTTTCGTTTTTC CAGCTCGGAGTGGCAGCGCCCCCTCGCGTATTTTCTGTAATGCTTGTTCA GTAGACAGAGTAGAATCATCGTCATCGTCCAAGCGGGAGGTTGACAGGGG GGGGTTGCACAAAACGGTCTCCGTAGGAAATTGAGCTCGCCCCCGGACAC AAACTCTATCGCAGGGGCGCTTCATTTATCTATATCGGCGCTATTCGCAA TCACAAAAGACAGTATGTGTTATAATACTTGACTTCACCTGAGATTTGTT TTTGGCTTGGAAGACATCGCCGGACCCTTCCCTTGCCGTTACGCGATGTC TTCCATTGTAATGCTCATACACAAGTCGTACTGTACACCTTTTTGCTTGT CGATTGACGGTGAAAACAGCTGGTGAATGCCCAGGCGCAAGTCAGCCCGG CGGATCTGCCCACCCTGCGAGTCGGGATCGACTGCACCTTGACACAACTC CTCGACAAGGGATTTCTTCACGCTGTAAGTTAAGTCCGTCCTGATGCTCC GCCAAGTTCTTTAGAGCAGATTACGCCTTTCGCGTCCTTGCCCTGAAGCA TTATTAATACAGTAATACAGTAATACTTTTGAAGGAGAGGGGGAAGGGGA AAAACTGTAACGGTCTTCCCTCTGCCCCCCTTGCTCTCGACTCCCGGCCG GCGCTTGCAGGACCCTCACGGTGGGAATCTGCTGAAGATGGCGGATGAAA AGCTGGCCTACTTGGTGAGAGCAGAAACAATGTAATGTTTTTCATGAACA TTACTAACAATGGTGCCTGCGCGGTCTTTGGTGCTACCAGGTATTTAATA GTAGTAGTAATATATGTATTAATGTGTCGTCGGTGAGCATTAACAGCAGC AGCAGTGACTTGAATCCTCCGTCAGGTGCCACATATAAATACATGTATTA ATATGGCGCACACGACCGGTTCTGTTGACTCTGTCGCCTTAAATAAGTGT AGACGACTTATTATTGTTAAATAGGGTATGAAATACTTGTACTAGACCTA TTCTCGGATGACGTGCTACAAGAGAAGAGACACAACAAGAGCCAAAGAGC CAAGCAAAGCCGTTCGGTTCGTCCGTTCATGACATGCACCCTACTTCCGG CAGGACTTTGGGTTGGTGAGCACTATCCCTCCTGGAGTCATGGACGCCCT AATCTGCGCCACATTACACGTCATGAACAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10278:9072..10402+

>mRNA_A-nodosum_M_contig10278.5.2 ID=mRNA_A-nodosum_M_contig10278.5.2|Name=mRNA_A-nodosum_M_contig10278.5.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:9072..10402+ (Ascophyllum nodosum dioecious)
ATGATTCGGTTCCGAGAGCTTTACGGATCGATGCCGCTAGTGGTGGTGCC
AAGAGTGCTCCTAAAATACAGCGGGCAGAGGGTGATAACATCAGAGTGGA
TCGACGGGGAGAAGCTGGTGAATGCCCAGGCGCAAGTCAGCCCGGCGGAT
CTGCCCACCCTGCGAGTCGGGATCGACTGCACCTTGACACAACTCCTCGA
CAAGGGATTTCTTCACGCTGACCCTCACGGTGGGAATCTGCTGAAGATGG
CGGATGAAAAGCTGGCCTACTTGGACTTTGGGTTGGTGAGCACTATCCCT
CCTGGAGTCATGGACGCCCTAATCTGCGCCACATTACACGTCATGAACAG
G
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