mRNA_A-nodosum_M_contig10273.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10273.8.1
Unique NamemRNA_A-nodosum_M_contig10273.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10273.8.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 8.220e-13
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 3 
Query:   99 STRRLLMVGLAEASAEKTMVRSHTGIRGAFVMETVSEGESGLAVQL 236
            S RRLLMVGLAE++A KTMVRSH GIRGAFV+ET  +G+SGLAVQL
Sbjct:  450 SMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVETTVDGKSGLAVQL 495
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BLAST of mRNA_A-nodosum_M_contig10273.8.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.500e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:   99 STRRLLMVGLAEASAEKTMVRSHTGIRGAFVMETVSEGESGLAVQL 236
            S RRLLMVGLAE++A KTMVRSH GIRGAFV++   EG+SGLAVQL
Sbjct: 1679 SMRRLLMVGLAESAAAKTMVRSHKGIRGAFVVDMTVEGKSGLAVQL 1724
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNY3_ECTSI8.220e-1378.26DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE5.500e-1276.09DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:14086..14845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size238
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866391.0549467-UTR-A-nodosum_M_contig10273:14085..141371680866391.0549467-UTR-A-nodosum_M_contig10273:14085..14137Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10273 14086..14137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866391.0661404-CDS-A-nodosum_M_contig10273:14137..141851680866391.0661404-CDS-A-nodosum_M_contig10273:14137..14185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 14138..14185 +
1680866391.0788505-CDS-A-nodosum_M_contig10273:14707..148451680866391.0788505-CDS-A-nodosum_M_contig10273:14707..14845Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 14708..14845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.8.1prot_A-nodosum_M_contig10273.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10273 14138..14845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10273.8.1

>prot_A-nodosum_M_contig10273.8.1 ID=prot_A-nodosum_M_contig10273.8.1|Name=mRNA_A-nodosum_M_contig10273.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
MLTRIVVLEVDALHREYASPAHGGSSRSFCREDDGSIAYRHPRSLRHGDC
LRGREWLGRAA*
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mRNA from alignment at A-nodosum_M_contig10273:14086..14845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10273.8.1 ID=mRNA_A-nodosum_M_contig10273.8.1|Name=mRNA_A-nodosum_M_contig10273.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:14086..14845+ (Ascophyllum nodosum dioecious)
TGCAGGGGTCCACCATACCCCCGTGGGAACGTGACTGGGAAAGCGGCGGC
ACATGTTGACGAGGATAGTGGTGTTGGAGGTGGACGCACTGCACCGGGAG
GTGATAACGATGGCGCGGATGAAGAGGAGGACGGCAAGGGTGGAAATGGC
ATCGACCTTGGCCAAGACGCCAAGAATTATTTCACCCTTCCTATGAGCGT
GACCAATTGGCGATTCTTCAAGGGCATCGCCAAGAGCAAAATAAGTGGAG
AAGTAGATGTCACGGTGAAATTGCCATCTAAGTGAATTTGTTTGGGTACT
ATGAATCGAGGGACTCGGGGATGGCGTCCCCTTGGCCAGGCACTTGATTC
CAGTTTAGGAAAGGATGGTTTTTGGCCCTAGCATGCACGGGTGGAACTCT
GACCTGGGGTGGGGTATGAACATATTGCGATAAAGCACAGCCTTTTTTGG
CAAGTTTTACACTCTCGTCGTGTCTTTTTTGTGAAGCATCATTGTCGCTT
TTCCCGATTATCGATGTACGATTCATGAACGTTTTGCTTGGGCGGCGTGT
CATATCGTTGAACGATCAAACTAACGTACCTTCCGTGGTTGTCTTCACTG
GCGTCTTTGTCTGCTTCACCAGTACGCGTCGCCTGCTCATGGTGGGTCTA
GCAGAAGCTTCTGCAGAGAAGACGATGGTTCGATCGCATACCGGCATCCG
AGGAGCCTTCGTCATGGAGACTGTCTCCGAGGGCGAGAGTGGCTTGGCCG
TGCAGCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:14086..14845+

>mRNA_A-nodosum_M_contig10273.8.1 ID=mRNA_A-nodosum_M_contig10273.8.1|Name=mRNA_A-nodosum_M_contig10273.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:14086..14845+ (Ascophyllum nodosum dioecious)
ATGTTGACGAGGATAGTGGTGTTGGAGGTGGACGCACTGCACCGGGAGTA
CGCGTCGCCTGCTCATGGTGGGTCTAGCAGAAGCTTCTGCAGAGAAGACG
ATGGTTCGATCGCATACCGGCATCCGAGGAGCCTTCGTCATGGAGACTGT
CTCCGAGGGCGAGAGTGGCTTGGCCGTGCAGCTTGA
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