mRNA_A-nodosum_M_contig10273.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10273.5.1
Unique NamemRNA_A-nodosum_M_contig10273.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:11716..14451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size640
Hectar predicted targeting categoryother localisation
Exons4
Cds size540
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.5.1prot_A-nodosum_M_contig10273.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10273 11735..14370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.9801893-UTR-A-nodosum_M_contig10273:11715..117341680866390.9801893-UTR-A-nodosum_M_contig10273:11715..11734Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10273 11716..11734 +
1680866391.0294127-UTR-A-nodosum_M_contig10273:14370..144511680866391.0294127-UTR-A-nodosum_M_contig10273:14370..14451Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10273 14371..14451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.9907663-CDS-A-nodosum_M_contig10273:11734..117951680866390.9907663-CDS-A-nodosum_M_contig10273:11734..11795Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 11735..11795 +
1680866390.9989636-CDS-A-nodosum_M_contig10273:12262..123231680866390.9989636-CDS-A-nodosum_M_contig10273:12262..12323Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 12263..12323 +
1680866391.0070112-CDS-A-nodosum_M_contig10273:13471..136041680866391.0070112-CDS-A-nodosum_M_contig10273:13471..13604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 13472..13604 +
1680866391.0171967-CDS-A-nodosum_M_contig10273:14085..143701680866391.0171967-CDS-A-nodosum_M_contig10273:14085..14370Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 14086..14370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10273.5.1

>prot_A-nodosum_M_contig10273.5.1 ID=prot_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp
MSEAFPFEADSSGFRHRLPKGRASYWRNPLMPRALPDDRSSGSRSSNANH
FDGGLEEDAEKDVIKAAIKAGAKKARKAEAEYERDCRGPPYPRGNVTGKA
AAHVDEDSGVGGGRTAPGGDNDGADEEEDGKGGNGIDLGQDAKNYFTLPM
SVTNWRFFKGIAKSKISGEVDVTVKLPSK*
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mRNA from alignment at A-nodosum_M_contig10273:11716..14451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10273.5.1 ID=mRNA_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2736bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:11716..14451+ (Ascophyllum nodosum dioecious)
GGGAACGACACTACGCGATATGTCTGAAGCTTTTCCCTTCGAAGCTGATT
CGTCAGGCTTTCGGCATCGACTTCCGAAAGGTATTCGAGTCGACTGTTTC
TTTTCGTATGTATTTATATTGCTCCGTTGAAGAAATGTTGAAAGGGCGAA
TTATCACTTTTGAACAAACCCGTGTTGTTTTTTCCCTGATATGTCACAAC
TCGAATGTTTTTCTTTTTGTCGTCGGCGTTATATCTCGAATCGCGTTCGT
TTTAGTAATATTATCTGATATAATGCGTACAGTACCACGTTAAGCCTGCG
GACAAGACCGTTTTGGACTTGTTGAACATTTGCCGCTGGAATCTATCACC
TCTTCAGAAGCAGAAGCTTGTGCCGCTACCAATCGTAGAGGATGTTGATG
TCCTCCCGAGACGGTTTTGTCCCCCCCTGAAACAAGAACTGATTTTTTTG
TTTCGAAATTCGTTCGTTATTTTCCTCACGTTTGCAGAACGATTGGCGGA
ATTTGCTTGCCCCTCCTCTTGAACGCCATCAATTTCGACCTCCGCAGGTC
GGGCGTCATACTGGCGAAACCCTCTGATGCCTCGCGCGCTCCCGGACGAC
CGATCGAGGTGTGTCAGGAAGGCATTGCGTGGTTTAACTGTATATATTTT
CGAGCAAGTGAATACCAAGTATTCGCAGAAGAGATGTGAAAAATGACGCC
GGCCGCGAATGCTCTAATCTACCCCCTGAAAAAGCATTTCCGAATGGATC
GGTCAAGTGTTATTTATTTAAGTTTTTGAATCATTCAAGTCATTCAATTC
ATGGTAACTTTTGACGACCTCTTGTGAGGTATATAATAAGCACGGTAGAT
ATATAGTTCTTTTTTAGGTTTGAGCTCGTTGATTATCACGGTTGTAAGTT
CAACTGTGTCAAAACGTGGCAATAGAAAACCAGAGATATTTTGCGCCTGG
CTATCGTAGGGAGTTAACCAGTCATGACTGGCGGAGTTAGCCAAAATCTT
CGCACCGCATGGCAGTACTTTTGCCGTTCCCGCGAGGAAGATTGATTTTC
TTTTGTGGGAGTTTGGATCTCAGCACACTTTGCGGATGTAACACATATAT
GGCCACACACCGGGTAAGGTTGCCAATCCTGCTCGCGGTCAGCTGAAAGG
GAAGCATGTTTTTTTTCCCTGTCCGCGTTCACGTCTGAGAATTTGGTCTC
GCGAGACGGGTTCGGTAGTCCCGTCCCGCGTCAGCCTGATCATCTCCATA
CTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGG
CGGCGTCCAATCATTCATTTAAACCGCCATACGCCATCGGGTCAGTCTCG
AGTTTATGGAGTCACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGT
CCGCCGACACAGGGCCAGTAAATCCCAAGGTAGTTCCAAACGAGTGCTAC
CTTGGCATGTCACCATGGACCAATCAATATGCGCCTCTCTTTCCCACACC
CACTATTGATTATTAGTGGACATGTCGATGGAAGCCAAAGGTCTATATGT
TCCTGAGCCTTCCGTTCTATTAGTTGTCTTAGTATCATGCAGAGATCGGA
ATGTTTCTTCCCAGTCGTTGAGTCGATGTTGTGATAAAGTGTGTTGGCGT
TTTCTACGAAACCGTGGATAATAGAGTATCGGTTTAAAAAAACTCGCTCC
TTCCTTCCTCGTCTCCGCTCCCGAATTTTCCCGAATATCCCCGATTTTCT
TTGTAGCGGCAGTCGCAGCAGCAACGCCAATCATTTCGATGGTGGTCTTG
AAGAGGATGCCGAAAAGGACGTTATTAAGGCCGCGATTAAGGCGGGTGCG
AAGAAGGCTAGGAAGGCCGAAGCGGAGTACGAAAGGGACGTGAGTGACTC
ATTTAGACTATTGAATGAAATAATGAATGAAATCGGTTGTACAGACAGGC
CGATATGAGTGTCTTTTGTCTTTTGCAAACTATTAATAACATCCTTCGCT
TTCTGAGATTAAACCTACGATGGCACCAATATTGTTCCAAGGTTTGATAA
TAGCACCACCTACCAAGTGTTTTTCGACGGTTACTTACGTTACTACAGTA
TGAAATGAGAGTGAGCAAGCGTTTTGATGCGAAATCTCATATTAGCGCTG
CCATTTTTTTGGGATGGTTTTGTACAATCTTGGTGGTATAGTCTGTATCG
ATACCGAAACGCTTTTTTGTTCACAGGTGCGTTTTCCCCTCTCAACGAGC
GGCTGATGGTATAACATAGCCACTGTGCTTCTATAGCTCCTCCTTGTTGC
TCGGGTATAATAGAGAGATAGCATGGGGGGTGCTTGTGAGTTTTTCGCAC
GCAATGTTGAAATTAAACAGTGCAGGGGTCCACCATACCCCCGTGGGAAC
GTGACTGGGAAAGCGGCGGCACATGTTGACGAGGATAGTGGTGTTGGAGG
TGGACGCACTGCACCGGGAGGTGATAACGATGGCGCGGATGAAGAGGAGG
ACGGCAAGGGTGGAAATGGCATCGACCTTGGCCAAGACGCCAAGAATTAT
TTCACCCTTCCTATGAGCGTGACCAATTGGCGATTCTTCAAGGGCATCGC
CAAGAGCAAAATAAGTGGAGAAGTAGATGTCACGGTGAAATTGCCATCTA
AGTGAATTTGTTTGGGTACTATGAATCGAGGGACTCGGGGATGGCGTCCC
CTTGGCCAGGCACTTGATTCCAGTTTAGGAAAGGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:11716..14451+

>mRNA_A-nodosum_M_contig10273.5.1 ID=mRNA_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:11716..14451+ (Ascophyllum nodosum dioecious)
ATGTCTGAAGCTTTTCCCTTCGAAGCTGATTCGTCAGGCTTTCGGCATCG
ACTTCCGAAAGGTCGGGCGTCATACTGGCGAAACCCTCTGATGCCTCGCG
CGCTCCCGGACGACCGATCGAGCGGCAGTCGCAGCAGCAACGCCAATCAT
TTCGATGGTGGTCTTGAAGAGGATGCCGAAAAGGACGTTATTAAGGCCGC
GATTAAGGCGGGTGCGAAGAAGGCTAGGAAGGCCGAAGCGGAGTACGAAA
GGGACTGCAGGGGTCCACCATACCCCCGTGGGAACGTGACTGGGAAAGCG
GCGGCACATGTTGACGAGGATAGTGGTGTTGGAGGTGGACGCACTGCACC
GGGAGGTGATAACGATGGCGCGGATGAAGAGGAGGACGGCAAGGGTGGAA
ATGGCATCGACCTTGGCCAAGACGCCAAGAATTATTTCACCCTTCCTATG
AGCGTGACCAATTGGCGATTCTTCAAGGGCATCGCCAAGAGCAAAATAAG
TGGAGAAGTAGATGTCACGGTGAAATTGCCATCTAAGTGA
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