Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 640 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 540 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866390.9801893-UTR-A-nodosum_M_contig10273:11715..11734 | 1680866390.9801893-UTR-A-nodosum_M_contig10273:11715..11734 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig10273 11716..11734 + |
| 1680866391.0294127-UTR-A-nodosum_M_contig10273:14370..14451 | 1680866391.0294127-UTR-A-nodosum_M_contig10273:14370..14451 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig10273 14371..14451 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866390.9907663-CDS-A-nodosum_M_contig10273:11734..11795 | 1680866390.9907663-CDS-A-nodosum_M_contig10273:11734..11795 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 11735..11795 + |
| 1680866390.9989636-CDS-A-nodosum_M_contig10273:12262..12323 | 1680866390.9989636-CDS-A-nodosum_M_contig10273:12262..12323 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 12263..12323 + |
| 1680866391.0070112-CDS-A-nodosum_M_contig10273:13471..13604 | 1680866391.0070112-CDS-A-nodosum_M_contig10273:13471..13604 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 13472..13604 + |
| 1680866391.0171967-CDS-A-nodosum_M_contig10273:14085..14370 | 1680866391.0171967-CDS-A-nodosum_M_contig10273:14085..14370 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 14086..14370 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10273.5.1 >prot_A-nodosum_M_contig10273.5.1 ID=prot_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp
MSEAFPFEADSSGFRHRLPKGRASYWRNPLMPRALPDDRSSGSRSSNANH
FDGGLEEDAEKDVIKAAIKAGAKKARKAEAEYERDCRGPPYPRGNVTGKA
AAHVDEDSGVGGGRTAPGGDNDGADEEEDGKGGNGIDLGQDAKNYFTLPM
SVTNWRFFKGIAKSKISGEVDVTVKLPSK* back to topmRNA from alignment at A-nodosum_M_contig10273:11716..14451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig10273.5.1 ID=mRNA_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2736bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:11716..14451+ (Ascophyllum nodosum dioecious)
GGGAACGACACTACGCGATATGTCTGAAGCTTTTCCCTTCGAAGCTGATT
CGTCAGGCTTTCGGCATCGACTTCCGAAAGGTATTCGAGTCGACTGTTTC
TTTTCGTATGTATTTATATTGCTCCGTTGAAGAAATGTTGAAAGGGCGAA
TTATCACTTTTGAACAAACCCGTGTTGTTTTTTCCCTGATATGTCACAAC
TCGAATGTTTTTCTTTTTGTCGTCGGCGTTATATCTCGAATCGCGTTCGT
TTTAGTAATATTATCTGATATAATGCGTACAGTACCACGTTAAGCCTGCG
GACAAGACCGTTTTGGACTTGTTGAACATTTGCCGCTGGAATCTATCACC
TCTTCAGAAGCAGAAGCTTGTGCCGCTACCAATCGTAGAGGATGTTGATG
TCCTCCCGAGACGGTTTTGTCCCCCCCTGAAACAAGAACTGATTTTTTTG
TTTCGAAATTCGTTCGTTATTTTCCTCACGTTTGCAGAACGATTGGCGGA
ATTTGCTTGCCCCTCCTCTTGAACGCCATCAATTTCGACCTCCGCAGGTC
GGGCGTCATACTGGCGAAACCCTCTGATGCCTCGCGCGCTCCCGGACGAC
CGATCGAGGTGTGTCAGGAAGGCATTGCGTGGTTTAACTGTATATATTTT
CGAGCAAGTGAATACCAAGTATTCGCAGAAGAGATGTGAAAAATGACGCC
GGCCGCGAATGCTCTAATCTACCCCCTGAAAAAGCATTTCCGAATGGATC
GGTCAAGTGTTATTTATTTAAGTTTTTGAATCATTCAAGTCATTCAATTC
ATGGTAACTTTTGACGACCTCTTGTGAGGTATATAATAAGCACGGTAGAT
ATATAGTTCTTTTTTAGGTTTGAGCTCGTTGATTATCACGGTTGTAAGTT
CAACTGTGTCAAAACGTGGCAATAGAAAACCAGAGATATTTTGCGCCTGG
CTATCGTAGGGAGTTAACCAGTCATGACTGGCGGAGTTAGCCAAAATCTT
CGCACCGCATGGCAGTACTTTTGCCGTTCCCGCGAGGAAGATTGATTTTC
TTTTGTGGGAGTTTGGATCTCAGCACACTTTGCGGATGTAACACATATAT
GGCCACACACCGGGTAAGGTTGCCAATCCTGCTCGCGGTCAGCTGAAAGG
GAAGCATGTTTTTTTTCCCTGTCCGCGTTCACGTCTGAGAATTTGGTCTC
GCGAGACGGGTTCGGTAGTCCCGTCCCGCGTCAGCCTGATCATCTCCATA
CTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGG
CGGCGTCCAATCATTCATTTAAACCGCCATACGCCATCGGGTCAGTCTCG
AGTTTATGGAGTCACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGT
CCGCCGACACAGGGCCAGTAAATCCCAAGGTAGTTCCAAACGAGTGCTAC
CTTGGCATGTCACCATGGACCAATCAATATGCGCCTCTCTTTCCCACACC
CACTATTGATTATTAGTGGACATGTCGATGGAAGCCAAAGGTCTATATGT
TCCTGAGCCTTCCGTTCTATTAGTTGTCTTAGTATCATGCAGAGATCGGA
ATGTTTCTTCCCAGTCGTTGAGTCGATGTTGTGATAAAGTGTGTTGGCGT
TTTCTACGAAACCGTGGATAATAGAGTATCGGTTTAAAAAAACTCGCTCC
TTCCTTCCTCGTCTCCGCTCCCGAATTTTCCCGAATATCCCCGATTTTCT
TTGTAGCGGCAGTCGCAGCAGCAACGCCAATCATTTCGATGGTGGTCTTG
AAGAGGATGCCGAAAAGGACGTTATTAAGGCCGCGATTAAGGCGGGTGCG
AAGAAGGCTAGGAAGGCCGAAGCGGAGTACGAAAGGGACGTGAGTGACTC
ATTTAGACTATTGAATGAAATAATGAATGAAATCGGTTGTACAGACAGGC
CGATATGAGTGTCTTTTGTCTTTTGCAAACTATTAATAACATCCTTCGCT
TTCTGAGATTAAACCTACGATGGCACCAATATTGTTCCAAGGTTTGATAA
TAGCACCACCTACCAAGTGTTTTTCGACGGTTACTTACGTTACTACAGTA
TGAAATGAGAGTGAGCAAGCGTTTTGATGCGAAATCTCATATTAGCGCTG
CCATTTTTTTGGGATGGTTTTGTACAATCTTGGTGGTATAGTCTGTATCG
ATACCGAAACGCTTTTTTGTTCACAGGTGCGTTTTCCCCTCTCAACGAGC
GGCTGATGGTATAACATAGCCACTGTGCTTCTATAGCTCCTCCTTGTTGC
TCGGGTATAATAGAGAGATAGCATGGGGGGTGCTTGTGAGTTTTTCGCAC
GCAATGTTGAAATTAAACAGTGCAGGGGTCCACCATACCCCCGTGGGAAC
GTGACTGGGAAAGCGGCGGCACATGTTGACGAGGATAGTGGTGTTGGAGG
TGGACGCACTGCACCGGGAGGTGATAACGATGGCGCGGATGAAGAGGAGG
ACGGCAAGGGTGGAAATGGCATCGACCTTGGCCAAGACGCCAAGAATTAT
TTCACCCTTCCTATGAGCGTGACCAATTGGCGATTCTTCAAGGGCATCGC
CAAGAGCAAAATAAGTGGAGAAGTAGATGTCACGGTGAAATTGCCATCTA
AGTGAATTTGTTTGGGTACTATGAATCGAGGGACTCGGGGATGGCGTCCC
CTTGGCCAGGCACTTGATTCCAGTTTAGGAAAGGAT back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig10273:11716..14451+ >mRNA_A-nodosum_M_contig10273.5.1 ID=mRNA_A-nodosum_M_contig10273.5.1|Name=mRNA_A-nodosum_M_contig10273.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:11716..14451+ (Ascophyllum nodosum dioecious)
ATGTCTGAAGCTTTTCCCTTCGAAGCTGATTCGTCAGGCTTTCGGCATCG
ACTTCCGAAAGGTCGGGCGTCATACTGGCGAAACCCTCTGATGCCTCGCG
CGCTCCCGGACGACCGATCGAGCGGCAGTCGCAGCAGCAACGCCAATCAT
TTCGATGGTGGTCTTGAAGAGGATGCCGAAAAGGACGTTATTAAGGCCGC
GATTAAGGCGGGTGCGAAGAAGGCTAGGAAGGCCGAAGCGGAGTACGAAA
GGGACTGCAGGGGTCCACCATACCCCCGTGGGAACGTGACTGGGAAAGCG
GCGGCACATGTTGACGAGGATAGTGGTGTTGGAGGTGGACGCACTGCACC
GGGAGGTGATAACGATGGCGCGGATGAAGAGGAGGACGGCAAGGGTGGAA
ATGGCATCGACCTTGGCCAAGACGCCAAGAATTATTTCACCCTTCCTATG
AGCGTGACCAATTGGCGATTCTTCAAGGGCATCGCCAAGAGCAAAATAAG
TGGAGAAGTAGATGTCACGGTGAAATTGCCATCTAAGTGA back to top
|