mRNA_A-nodosum_M_contig10259.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10259.1.1
Unique NamemRNA_A-nodosum_M_contig10259.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.210e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +A+R  + +D+KAV++  G  NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.270e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +A+R  + +D+KAV +  G +NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8J5MG70_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MG70_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.700e-19
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   40 VETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +E ++  E ELVFDL+GVDAS+ANALRRI+LAEV T+AIE+VY+ MNS +IHDE+LAHRL
Sbjct:   48 IEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRL 107
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 86.7 bits (213), Expect = 1.610e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   24 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 93
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.210e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   61 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 130
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-18
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++ ++++ +K     D    E+VFDLVGVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   30 FVEQLKKQVKVKIQSLTD---EEIVFDLVGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 99
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 6.300e-18
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F D+++ K+ +K        E+ ++FDL+G+DA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVDQSKSKVKIKLQRLT---EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 7.110e-18
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++ ++++ +K     D   +E+VFDL+GVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:  319 FVEQLKKQVKVKIQSLTD---DEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 388
[Close]
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.130e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F D  ++++ +K     D   +E+VFDL+G+DASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   26 FVDNFKKQLKVKIQSLTD---DEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRL 95
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI2.210e-2880.82DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE2.270e-2880.82DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8J5MG70_9STRA5.700e-1961.64Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S2RJI0_9STRA1.380e-1870.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D0NVB2_PHYIT1.610e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
H3GV90_PHYRM2.210e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8K1FTD9_PYTOL3.300e-1863.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AUD4_PLAHL6.300e-1858.90DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A2D4CAL0_PYTIN7.110e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA8.130e-1860.27DNA-directed RNA polymerases I and III subunit RPA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10259contigA-nodosum_M_contig10259:15..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPF8
Preferred namePOLR1C
PFAMsRNA_pol_A_bac,RNA_pol_L
Model size225
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523,RC02795
KEGG koko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
KEGG TC1.I.1
KEGG ReactionR00435,R00441,R00442,R00443,R03661,R05578
KEGG Pathwayko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG ModuleM00121,M00181,M00182,M00359
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue3.62e-29
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota
EC6.1.1.15,6.1.1.17
Descriptiontranscription by RNA polymerase I
Cds size225
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.5636501-CDS-A-nodosum_M_contig10259:14..1011680866390.5636501-CDS-A-nodosum_M_contig10259:14..101Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10259 15..101 -
1680866390.5754728-CDS-A-nodosum_M_contig10259:611..7491680866390.5754728-CDS-A-nodosum_M_contig10259:611..749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10259 612..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10259.1.1prot_A-nodosum_M_contig10259.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10259 15..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10259.1.1

>prot_A-nodosum_M_contig10259.1.1 ID=prot_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATV
AIEHVYMFMNSSIIHDEILAHRLD*
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mRNA from alignment at A-nodosum_M_contig10259:15..749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10259.1.1 ID=mRNA_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig10259:15..749- (Ascophyllum nodosum dioecious)
TTCGCGGACCGCGCTAGGAGGAAAATCGATCTCAAGGCGGTGGAGACTGT
CGACGGCGACGAGAATGAGCTGGTGTTCGATCTCGTGGGCGTCGATGCTT
CCATCGCGAACGCCTTGAGACGAATCTTACTCGCCGAGGTGACATGCCGC
CTGCTTTCTCCTACCCCCCCCCGCCTTCGCAGATCCACATTCTCTCAGAG
GCGAGAACGGAGACAGGGAGAAAAAACATTTTCCATGTCTAGCTGACCAC
GAGGAGGGTTGGCTTATCACATGAACACACCATGCTGTCGTGCGGTCCGT
TGGAACCAGCGGTTTGCGCCCTGAGTGCAATCGGTGGAATGCAATCCTAG
AGCTACGCACGAGCTACTTTACATCCAGCTGCTCTCTCTAGTGTACCTTC
ATCCGCTTCGCTCTTTGCTAAATAGTCGTTCTCAACGCTTATATATTCTG
AAAATATCGTACAGGTATCTAATCGTTTGGAAAAGAAATTGTCGGGTACA
AAAGCAAAACTCTTTCTCGGAGTAGGCGCCATATATTTACGAGTACAATC
GTCCAGTCAGCGGGAGGGCAGCCTGATTGGCGATGAAGGGGCGAGCTTGT
TGGCCGCTGTTGTTCATTTTCTCCCTCTGTTTCTTTGCACACACACAGGT
GGCAACGGTTGCCATCGAGCACGTCTACATGTTCATGAACTCGTCGATCA
TCCACGACGAGATCCTTGCGCACCGACTAGATTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10259:15..749-

>mRNA_A-nodosum_M_contig10259.1.1 ID=mRNA_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10259:15..749- (Ascophyllum nodosum dioecious)
TTCGCGGACCGCGCTAGGAGGAAAATCGATCTCAAGGCGGTGGAGACTGT
CGACGGCGACGAGAATGAGCTGGTGTTCGATCTCGTGGGCGTCGATGCTT
CCATCGCGAACGCCTTGAGACGAATCTTACTCGCCGAGGTGGCAACGGTT
GCCATCGAGCACGTCTACATGTTCATGAACTCGTCGATCATCCACGACGA
GATCCTTGCGCACCGACTAGATTGA
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