mRNA_A-nodosum_M_contig1025.8.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1025.8.2
Unique NamemRNA_A-nodosum_M_contig1025.8.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1025.8.2 vs. uniprot
Match: A0A7S3K2I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2I7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.410e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 DVVSSLNDLAGLLKSQSKYDDAEPLFKRALAIREETLGPRHP 129
            +V  SLN+LA LL +Q KYD+AEPLF+RAL  REE  G  HP
Sbjct:   16 EVAESLNNLAQLLHNQGKYDEAEPLFQRALKTREEKFGSNHP 57
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BLAST of mRNA_A-nodosum_M_contig1025.8.2 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-5
Identity = 24/37 (64.86%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   19 LNDLAGLLKSQSKYDDAEPLFKRALAIREETLGPRHP 129
            LN+LAGLL+SQ KY++A+PL++RA+ I E+TLGP HP
Sbjct:    2 LNNLAGLLESQGKYNEAKPLYERAIEIGEKTLGPNHP 38
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BLAST of mRNA_A-nodosum_M_contig1025.8.2 vs. uniprot
Match: A0A292PMN7_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Tuber aestivum TaxID=59557 RepID=A0A292PMN7_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 7.220e-5
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PDVVSSLNDLAGLLKSQSKYDDAEPLFKRALAIREETLGPRHP 129
            P+ ++S+N+LAG+L+SQ KYD++E + +RALA RE   GP HP
Sbjct:    1 PNTLTSVNNLAGVLESQGKYDESEEMHRRALAGRERIHGPDHP 43
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BLAST of mRNA_A-nodosum_M_contig1025.8.2 vs. uniprot
Match: U7Q9U4_9CYAN (TPR repeat family protein (Fragment) n=1 Tax=Lyngbya aestuarii BL J TaxID=1348334 RepID=U7Q9U4_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.220e-5
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 PDVVSSLNDLAGLLKSQSKYDDAEPLFKRALAIREETLG 117
            P V +SLN+LA L +SQ +YD+AEPL+KR+LAI E+ LG
Sbjct:    5 PRVATSLNNLASLYRSQGRYDEAEPLYKRSLAIWEKALG 43
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1025.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3K2I7_9STRA5.410e-661.90Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S3NLU4_9STRA1.110e-564.86Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A292PMN7_9PEZI7.220e-553.49Uncharacterized protein (Fragment) n=1 Tax=Tuber a... [more]
U7Q9U4_9CYAN7.220e-561.54TPR repeat family protein (Fragment) n=1 Tax=Lyngb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1025contigA-nodosum_M_contig1025:129347..133990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G180
PFAMsTPR_10,TPR_12
Model size2196
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue3.35e-06
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size831
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1025.8.2prot_A-nodosum_M_contig1025.8.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1025 130712..133990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.4429092-UTR-A-nodosum_M_contig1025:129346..1307111680866390.4429092-UTR-A-nodosum_M_contig1025:129346..130711Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1025 129347..130711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.4532068-CDS-A-nodosum_M_contig1025:130711..1307351680866390.4532068-CDS-A-nodosum_M_contig1025:130711..130735Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 130712..130735 -
1680866390.4617734-CDS-A-nodosum_M_contig1025:131115..1312411680866390.4617734-CDS-A-nodosum_M_contig1025:131115..131241Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 131116..131241 -
1680866390.4806335-CDS-A-nodosum_M_contig1025:131827..1319531680866390.4806335-CDS-A-nodosum_M_contig1025:131827..131953Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 131828..131953 -
1680866390.4893417-CDS-A-nodosum_M_contig1025:132245..1323711680866390.4893417-CDS-A-nodosum_M_contig1025:132245..132371Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 132246..132371 -
1680866390.4989002-CDS-A-nodosum_M_contig1025:132659..1327851680866390.4989002-CDS-A-nodosum_M_contig1025:132659..132785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 132660..132785 -
1680866390.51061-CDS-A-nodosum_M_contig1025:133110..1332361680866390.51061-CDS-A-nodosum_M_contig1025:133110..133236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 133111..133236 -
1680866390.5212817-CDS-A-nodosum_M_contig1025:133525..1336511680866390.5212817-CDS-A-nodosum_M_contig1025:133525..133651Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 133526..133651 -
1680866390.532466-CDS-A-nodosum_M_contig1025:133939..1339901680866390.532466-CDS-A-nodosum_M_contig1025:133939..133990Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1025 133940..133990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1025.8.2

>prot_A-nodosum_M_contig1025.8.2 ID=prot_A-nodosum_M_contig1025.8.2|Name=mRNA_A-nodosum_M_contig1025.8.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=277bp
PDVVSSLNDLAGLLKSQSKYDDAEPLFKRALAIREETLGPRHPDVASSLN
NLATCLAPQGKYDDAERLFKDALAICEETLGPRHPDVASSLNNLAILLKS
QGKYDDAEPLYKRALAIREETLVPRHPDVASSLDNLAVLLKSQGKYHNAE
PLFKRALVIREETLGPRHPDVATVLDNLAGLLESQGKYDDAQPLYKRALA
IREETLGPRHLDVASSLTSLAILLSSQGNTNELETLFKRALAIREQVLVP
GHPDVVETRNNLAELIETKGKCGDAE*
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mRNA from alignment at A-nodosum_M_contig1025:129347..133990-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1025.8.2 ID=mRNA_A-nodosum_M_contig1025.8.2|Name=mRNA_A-nodosum_M_contig1025.8.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4644bp|location=Sequence derived from alignment at A-nodosum_M_contig1025:129347..133990- (Ascophyllum nodosum dioecious)
CCGGATGTGGTTTCAAGTCTGAACGACCTGGCGGGTTTGTTGAAATCACA
GGTAATGTGGCATTGATCGAGATCCTTTGACTCGCCATTCCGTATTTCGT
ATGTGAGTAGGGGTTACGCTGAACGAAGGACATGACCTGTCAACCAAGTA
TGTGGGTGCGGAAGTATTCATTTGCGCCCATTCTTGAGGACGGACGGGGA
TGATCTGGGAAGACCTTTTGCAAACTTTGTCAAACAGTCATTTCATTGGG
CGCCTTGTTGGGGGAACGAGGCGACGTGGCTGACCACATGGTCCGCCCGA
GTTATAGTTTTAACATCACGCTTTTTCCTCGCAAATCAGAGCAAGTACGA
CGACGCTGAGCCGCTGTTCAAGCGTGCCCTCGCCATCCGTGAGGAAACGT
TAGGTCCTCGACATCCGGATGTGGCTTCAAGCCTGAACAACCTGGCGACT
TGTCTGGCACCACAGGTAGTGTGGCACTGATCGAGACCCTTCGATTCGCC
GCGCGGTATTTCGTAAGTGGATGGGGTTTAAGCTGAACTAAGCACATGGC
CTGTCAACCAAGTATGTGAGGGCGGAAGGATTCATTTGCGCCCATTCTTG
AGGACGGGCGGGGACGATCTGGGAGGACCTTTTGCAAACTTTGTCAAACA
GTTATTTCAGTGGGCACCTCGTTGGGGGAACGGGGGACCGTGGTTGACCA
CTAAGCCCGCCTGAATTGGGATTTTCACCATCACGCTTTTTTCTCGCAAA
TCAGGGCAAGTACGACGACGCTGAGCGGTTGTTCAAGGATGCCCTTGCCA
TCTGTGAGGAAACGTTAGGTCCTCGACATCCGGATGTGGCTTCAAGCCTG
AACAACCTGGCGATTTTGTTGAAATCACAGGTAATGTGGCATTGATCGAG
ATCCTTTGACTCGCGGTTCGGTATTTCGTATGTGAGTAGGGTCGAAGCTG
AACGAATGACATGCCCTGTCAAACAAGTACCTTTGTGAGAGCGCAAAGAT
TCGTTCGCGCCCATTATTGAGGATAGACGGGGGTGACCTGGAACGACCTT
TTGTTAACTTTGTCAAGCAGTCATTTCAGTGGGCGCTTCGTTGTGAGAGG
GAGCCGACGTGGTTGACGACTTGGCCCGCCCGAATTATGACCGTCAGGAG
GTAGGCTTGGAAGCAGCCATTATTTTCACCATCACGCTTTTCCCCCGCAA
ATCAGGGCAAGTACGACGACGCTGAGCCACTTTACAAGCGTGCCCTCGCC
ATCCGCGAGGAAACGTTAGTTCCTCGACATCCGGATGTGGCTTCAAGCCT
GGACAACCTGGCGGTTTTATTGAAATCACAGGTAATGTGGCATTGATCGA
GATCCTTTGACTCGCGGTTTGGTATTTCGTTTGTGAGTAGAAGCTCAACG
AAGGACACGACCTGTCAACCAAGTACCTCTGTGAGAGCGGAAAGATTCAT
TTGCGCCCATTCTTGAGGACGGACGGGGGTGGTCTGGGAAGACCTTTTGC
AAACTTTGTCAAACAGTCATTTCAGTGGGCACCTCGTTGGGGGAACGGGG
CAGTGTGGTTGACAACTTAGCCCGCCCGAATTGGGATTTTCACCATCACG
CTTTCTCCTCGCAAATCAGGGCAAGTACCACAACGCTGAGCCACTGTTCA
AGCGTGCCCTCGTCATCCGTGAGGAAACGTTAGGTCCTCGACATCCGGAT
GTGGCTACAGTTCTGGACAACCTGGCGGGTTTGCTGGAATCGCAGGTAAT
ATGGCATTGATCGAGATCCTTAGACTTGCCGTTCGGTATTTCGTATGTGA
GTAGGGTTGAAGCTGAACGAAGGACATGACCTGTCAAACAAGTACGTCTG
TGAGAGCGGAAAGATTCATTTGCGCCCATTCTTGAGGACAGACGGGGGTG
ATCTGTGAAGACCTTTGGCAAACTTTGTCAAACAGTCATTTCAGTGGTCA
CCTCGTTGGGGAAACGAGGCGACGTGGTTGACCACATGGCCCGCCCGAAT
TGTGATTTTACCGTCACGCTTTTTTCTCGTCAATCAGGGCAAGTACGACG
ACGCCCAGCCGCTTTACAAACGTGCCCTTGCCATCCGCGAGGAAACGTTA
GGTCCTCGACATCTGGATGTGGCTTCAAGCCTGACCAGCCTTGCGATTTT
GCTATCATCACAGGTAATGTGGCATTGATCGAGGTCCTTCTACTCGCCGT
TCGGTATTTCGTATGTGATTAGGGTTGAAGCTGAACGACAGACAAGAAAA
GAGCAGTTTAAGGATCAATTATTTCGTAGTATTTCTATCGTTGGCAGCAC
TATCTTGGGGCGTTTCCCTTCCTTCAGGGCAAGTTTGACGGCGTCGAGTC
GTTCTACAAGCGTCCCTTAGCCATCCGCGAGCAAACGCTAGGTCGTGACC
ATCCGGAAGTGACTGAAAGTCTCTACAGGTTTTGGGGTTTATTCAGGTCA
CAGGCGTAATTTGAAAGTTGTTTGCTGTGGAAACGCATCGGCTGGGATAT
GCCGAGAATCCACTTTACACAGCTATTTTATCTGTGTGTTGTTTTTGTGA
TTTTGCTCGAGCTACTTGTCCTGAACAAGATGTAACTTCTGTCTAGTACG
CGGACCGTAGATGAAGACTTAGGCCTTGTATGATAACTTTGGCAAATGCG
TCATTAGAAGCAGGGCGACTACCTCGACCATATAGTCCCGCAGTATTTCT
ACCCTTATTAGCCACATCCGCTTCGCGCATTCTCCTTACTAACCACCAGG
GCAATACCAACGAGCTCGAGACGCTCTTTAAGCGGGCGCTTGCCATCCGC
GAGCAAGTGCTTGTTCCTGGCCACCCAGACGTGGTGGAAACACGTAATAA
CTTGGCGGAGTTGATCGAGACAAAGGTGAAAATTAATGCTCATTTGCCAA
AAATATTTATCCATTCGGAGCTCGTCGCGTATACTTATAATTTGCCTTCA
GACAAGGTACATACTAACGAAGAAGAATACAGAGGACACCCAGGTATGAC
CGTATTGTAGGTTATAGGGTTTGATGGGCATTGAGAATGTCGAGCTCAAA
AACCAGGAGCTGTAGAGGTCGTGCGAGCGACGAGACTATGCCGGGCATGT
TTTTGCTAGCAAAAGAGGCTGATCCGGTAACAGCTTTGTATTTTTCATGG
CGTAGTATTGTGTGTTGACCCTTGTTATTGTAGCCCAAGAGGAAGCGTAG
TCGATTATTTCGCTTTTTTGCACTCTCTGATCGCGCTATTATTCTTTTGT
TCCAGGGCAAGTGCGGTGACGCCGAGTGACTTCACAAGCACTCCCTTGCT
ATCCGGGAGAGTAAAGAGCAGCTGGACATGTCTACAAATCTCAACAAACC
TGGGAAGTGCGCTGTGATGACAGGTAGCCACAGGCGACAGCTAATCGCGT
GCGGTTGAAGGGCATTCCCTGAAAACAAAAAAAACGACTGCGTTACACCG
AGGCGCCTGTATATATGTATACTATGCATTTTTAGGTTGATGCAGTATTA
CCGTGGACGTAAGGGGTTGTTTTTGGGAGACTTTGCAGCCTTCTTGGAAC
ATTGAAATTGTGGGTGTGTCTTTATCGGGAATAGCGGGGCGTTGTTAATA
TACTTTCTCCTCTGTATTTCTAGGTAACCTTATGGTATGTCCTCCCAATT
CTTCCGATTCAGGATAGTTCAGCCATTCATCAGGTACAATGACTCTTGTC
TTACCGTCAACTAGGGACAATACCAGATTTACGTAAAGCTCGGATTCGGG
TCGAAGCGTCAGTTAAGGATGCCCTCGAGGGTGCACATGAGGGAAAGACC
GAACAAGGTCAAGTTCGATTGAAGTACGGTCGGGCTTGAGCTTCAGCAAG
CGAGACAAAAGTAACGGCTGGGGGTGATAATAAGAGTTGTCATTAATTTT
TTGTAGCAAAAGTTTGGTTGTAGCTAGCTTACCCTTCAGCCAGGGGGAAA
CTCCTGAGGAGGTGCCCGTGCAGAAATGGTTTCTCGCGCAACTATTGCTT
CCTGCCCGTGTTTTTTGTGTAGTTATGGTGGTTGCGAGTTGCTGCCTGAG
GCACGATGGCGGCGACGTGTTGTATGCGACTGCGCGCTCTAGCTTGGACC
GCCTCCCGGAAAATTATTTAAAGAGCAAGAGTAATTAGAGTAATTCGATC
GCGACGGCGGGGACGAGTCGCTCGGCGAGATGCCCGCGATAGAAGCCACG
ATGTTTCGCAATGTCTCCGCCTCGGAATAATGGGCTGCAAACCTCACATG
GGGGGAATTCAACGCCGTCTGTAAATACGCCGCTGGCGCTGGGCACCTTG
ATGGCCTAGGCCGTCGCCCGAATGGCTGGATAGATATAAAAAAGGTTGAG
GGTTCGACCAGCCATCAGGAGATGGTGCTTTGGTTCTCGAGGGATTCCGA
GGGATTCTCCTGCGATCCGAACCCCCATGGCTGGTAACACGACCGGGGTA
ATTGATCCCCGGAATAATTTTCGTTGTAGTGTGGAGTTTCAACGAGTGGG
AATGGTGCAGGAAAGCGTGCAATGCGGTAATATATCTAGACGTCGGAGGC
GTTCTGCTAAAGCTTCGTTCAAGTGTACCTCTCTTTGTTTTGCATATTTT
TCAGGTGTGAAGGTTGTGATATTTATTCCTAATTCAACAAAAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1025:129347..133990-

>mRNA_A-nodosum_M_contig1025.8.2 ID=mRNA_A-nodosum_M_contig1025.8.2|Name=mRNA_A-nodosum_M_contig1025.8.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=831bp|location=Sequence derived from alignment at A-nodosum_M_contig1025:129347..133990- (Ascophyllum nodosum dioecious)
CCGGATGTGGTTTCAAGTCTGAACGACCTGGCGGGTTTGTTGAAATCACA
GAGCAAGTACGACGACGCTGAGCCGCTGTTCAAGCGTGCCCTCGCCATCC
GTGAGGAAACGTTAGGTCCTCGACATCCGGATGTGGCTTCAAGCCTGAAC
AACCTGGCGACTTGTCTGGCACCACAGGGCAAGTACGACGACGCTGAGCG
GTTGTTCAAGGATGCCCTTGCCATCTGTGAGGAAACGTTAGGTCCTCGAC
ATCCGGATGTGGCTTCAAGCCTGAACAACCTGGCGATTTTGTTGAAATCA
CAGGGCAAGTACGACGACGCTGAGCCACTTTACAAGCGTGCCCTCGCCAT
CCGCGAGGAAACGTTAGTTCCTCGACATCCGGATGTGGCTTCAAGCCTGG
ACAACCTGGCGGTTTTATTGAAATCACAGGGCAAGTACCACAACGCTGAG
CCACTGTTCAAGCGTGCCCTCGTCATCCGTGAGGAAACGTTAGGTCCTCG
ACATCCGGATGTGGCTACAGTTCTGGACAACCTGGCGGGTTTGCTGGAAT
CGCAGGGCAAGTACGACGACGCCCAGCCGCTTTACAAACGTGCCCTTGCC
ATCCGCGAGGAAACGTTAGGTCCTCGACATCTGGATGTGGCTTCAAGCCT
GACCAGCCTTGCGATTTTGCTATCATCACAGGGCAATACCAACGAGCTCG
AGACGCTCTTTAAGCGGGCGCTTGCCATCCGCGAGCAAGTGCTTGTTCCT
GGCCACCCAGACGTGGTGGAAACACGTAATAACTTGGCGGAGTTGATCGA
GACAAAGGGCAAGTGCGGTGACGCCGAGTGA
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