mRNA_A-nodosum_M_contig10248.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10248.6.1
Unique NamemRNA_A-nodosum_M_contig10248.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.470e-31
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:    2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGLDACPSGLETLSATSN 265
            DLMPT M  ILG SHP+S+  +R VWVT GFLLAAPLAFSRTLGALKYTATLAIGLV+FL+GMV+SF V+PGLDACP   ET++ + N
Sbjct:  152 DLMPTAMDDILGRSHPDSVLRDRHVWVTIGFLLAAPLAFSRTLGALKYTATLAIGLVVFLAGMVMSFLVLPGLDACPPD-ETVAISLN 238
[Close]
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.890e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:    2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGLDAC 229
            D+MP  M  ILGD  P   WL R+ W+ AG+LL  P+AF++TL ALK+T++ A+ +V+ +  M + + V P LD C
Sbjct:  213 DMMPDAMKFILGDDGPP-FWLSRQTWIVAGWLLVVPMAFAKTLDALKFTSSFAVAVVMGVVAMTILYAVDPDLDGC 287
[Close]
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: A0A835YKE8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-9
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 2 
Query:    2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGL 220
            DL+P  +  +L +    +L L R  W+T   +  APLA  R+LGALKYTATLAIG   FL  MV+++  VP L
Sbjct:  117 DLLPDAVEGLLKERAAPAL-LSRHFWITTAMVWIAPLAAQRSLGALKYTATLAIGFAFFLVSMVVAYAAVPSL 188
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1F5_ECTSI1.470e-3172.73Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
A0A7S1TS32_9STRA4.890e-1344.74Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A835YKE8_9STRA1.590e-946.58Transmembrane amino acid transporter protein-domai... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10248contigA-nodosum_M_contig10248:11262..12402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.2654254-CDS-A-nodosum_M_contig10248:11261..114021680866390.2654254-CDS-A-nodosum_M_contig10248:11261..11402Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10248 11262..11402 +
1680866390.2745755-CDS-A-nodosum_M_contig10248:12273..124021680866390.2745755-CDS-A-nodosum_M_contig10248:12273..12402Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10248 12274..12402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10248.6.1prot_A-nodosum_M_contig10248.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10248 11262..12402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10248.6.1

>prot_A-nodosum_M_contig10248.6.1 ID=prot_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp
GPDADSHVANPGRFAPGVTVAGEACLGHRGIPARGSFGLQSNPRSPQIHR
NTRHRPGYLPVGDGAVLPRGPGARRLPIRPGNPVSDVKLH
back to top

mRNA from alignment at A-nodosum_M_contig10248:11262..12402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10248.6.1 ID=mRNA_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at A-nodosum_M_contig10248:11262..12402+ (Ascophyllum nodosum dioecious)
GGACCTGATGCCGACAGTCATGTCGCAAATCCTGGGAGATTCGCACCCGG
AGTCACTGTGGCTGGAGAGGCGTGTCTGGGTCACCGCGGGATTCCTGCTC
GCGGCTCCTTTGGCCTTCAGTCGAACCCTCGGAGCCCTCAAGTGCGCGCC
ATTAAAAAACACAAACAAACAAAAAAGCATGAAATTGCTTTTTGTTTTTT
TCGGTGGGGCGAGAAAGATTTGTGCGAGTTTTTTTATTGTTTTTCCGCTT
CCGGATATTTAAAGAAAAATTCCCTCTCAACCTTTTTTTTTTGTGTGCGT
GTTTGTGTGCATATTTATTTAATTGCGCATATAACCACGCAATCCGGCCC
TGTCACCCTATTAATAGTCATTGTAGTATGCTATTAATACTATACTATAC
TATACTATACACTATGTACTATACTAGCATTGGTCCTCCCGAGGGGGGGA
ATCACAATGTGTGAGAATTGTGTGGGGGGAGAGGGTTTATACGTGAGTGG
TTGGGAAGGGTTTACAGGGGACAGGGGACATGTTATCAAAGGCATCTCTT
GGGTGGCACGAACGGAAGTCGTGTATTGCGATGGGATTTGCGATCATGCT
ATCCATACATACATATAAAAATACACTCAATAAAATAATACGATCGGAGA
TGAGGGCGAAACAAACTGTACAATATAATCCCTTCCCAGGCGTTGCCGAG
CCTGTCTTTGTACGTACAAACGAGGCAGTCTTTGAGCGCTGCGCGGAAAC
AGAAGGGAATTTTTTAATCCTTTTTCTCTAATGTCATTATTTTTTTGCTT
TTCTTTGTATAAGAGACAAGAGGGAGGTAATAAACCCAAGTCGTTTTAAA
GAAAAAATGAACGCATCTAGACCTTTTCCTTCTGATATTCAAAAGTTTAT
TCGTGCGTCCTCTTTCGATCTGTGTCCGGAACCATAATGGAAATATGTAA
GACTCGAAGCCAATTGATAAACGCCCCTCGCCCTTCCCTCTCCCAAAACA
AAAATCGGCCAGATACACCGCAACACTCGCCATAGGCCTGGTTATCTTCC
TGTCGGGGATGGTGCTGTCCTTCCGCGTGGTCCCGGGGCTCGACGCCTGC
CCATCAGGCCTGGAAACCCTGTCAGCGACGTCAAACTTCAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10248:11262..12402+

>mRNA_A-nodosum_M_contig10248.6.1 ID=mRNA_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig10248:11262..12402+ (Ascophyllum nodosum dioecious)
GGACCTGATGCCGACAGTCATGTCGCAAATCCTGGGAGATTCGCACCCGG
AGTCACTGTGGCTGGAGAGGCGTGTCTGGGTCACCGCGGGATTCCTGCTC
GCGGCTCCTTTGGCCTTCAGTCGAACCCTCGGAGCCCTCAAATACACCGC
AACACTCGCCATAGGCCTGGTTATCTTCCTGTCGGGGATGGTGCTGTCCT
TCCGCGTGGTCCCGGGGCTCGACGCCTGCCCATCAGGCCTGGAAACCCTG
TCAGCGACGTCAAACTTCAC
back to top