mRNA_A-nodosum_M_contig10248.6.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.470e-31 Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 2 Query: 2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGLDACPSGLETLSATSN 265
DLMPT M ILG SHP+S+ +R VWVT GFLLAAPLAFSRTLGALKYTATLAIGLV+FL+GMV+SF V+PGLDACP ET++ + N
Sbjct: 152 DLMPTAMDDILGRSHPDSVLRDRHVWVTIGFLLAAPLAFSRTLGALKYTATLAIGLVVFLAGMVMSFLVLPGLDACPPD-ETVAISLN 238
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.890e-13 Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGLDAC 229
D+MP M ILGD P WL R+ W+ AG+LL P+AF++TL ALK+T++ A+ +V+ + M + + V P LD C
Sbjct: 213 DMMPDAMKFILGDDGPP-FWLSRQTWIVAGWLLVVPMAFAKTLDALKFTSSFAVAVVMGVVAMTILYAVDPDLDGC 287
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Match: A0A835YKE8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.590e-9 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 2 Query: 2 DLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFRVVPGL 220
DL+P + +L + +L L R W+T + APLA R+LGALKYTATLAIG FL MV+++ VP L
Sbjct: 117 DLLPDAVEGLLKERAAPAL-LSRHFWITTAMVWIAPLAAQRSLGALKYTATLAIGFAFFLVSMVVAYAAVPSL 188 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10248.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10248.6.1 >prot_A-nodosum_M_contig10248.6.1 ID=prot_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp GPDADSHVANPGRFAPGVTVAGEACLGHRGIPARGSFGLQSNPRSPQIHRback to top mRNA from alignment at A-nodosum_M_contig10248:11262..12402+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10248.6.1 ID=mRNA_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at A-nodosum_M_contig10248:11262..12402+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10248:11262..12402+ >mRNA_A-nodosum_M_contig10248.6.1 ID=mRNA_A-nodosum_M_contig10248.6.1|Name=mRNA_A-nodosum_M_contig10248.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig10248:11262..12402+ (Ascophyllum nodosum dioecious)back to top |