mRNA_A-nodosum_M_contig10244.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: D7FH74_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH74_ECTSI) HSP 1 Score: 206 bits (524), Expect = 1.640e-61 Identity = 120/252 (47.62%), Postives = 154/252 (61.11%), Query Frame = 1 Query: 1 YKAPEERVSSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQ-------RQAPAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 YKAP+ RV S +APPSSVARPNY D LRR V+VVVY+HIKTCQ + AAA+ +P+ ++ N K +R +A + D AR ++ RYNF+ P MALPG ++TLREV S PK P VDEI++F+ +F A LSSECS++CLIYVERLM ARVPLL TWKP++L LLLASK+WQDLSSWN EF++V PEY++ I++LE+ F Sbjct: 11 YKAPDRRVFSAVAPPSSVARPNYHDALRR-VAVVVYQHIKTCQWKRKMAEERERAAAETEPEGSRQDNMKSWRRSAPSLAALRRNESALWGEGGRDGARWAGGGGEPPSAEVHGFNAKMAEAFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKNINRLELLF 261
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A6H5JJI4_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI4_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.870e-53 Identity = 125/269 (46.47%), Postives = 156/269 (57.99%), Query Frame = 1 Query: 1 YKAPEERVSSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQ---------RQAPAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRAS---------------RYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 YKAP+ RV S +APPSSVARPNY D LRR V+VVVY+HIKTCQ +APA + + + M E ++ V R G XXXXX PS + + A RYNF+ P MALPG ++TLREV S PK P VDEI++F+ +F A LSSECS++CLIYVERLM ARVPLL TWKP++L LLLASK+WQDLSSWN EF++V PEY++ I++LE+ F Sbjct: 246 YKAPDRRVFSAVAPPSSVARPNYHDALRR-VAVVVYQHIKTCQWKRKMAEERERAPAETETEGSRQDMKVENSDEMTSVVVMPVRDGARWPGXXXXXXXXXXXXX----XXXXXXXXXXGGGEPSSAEVHGFNAKMAEVFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKSINRLELLF 509
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A835YNR4_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR4_9STRA) HSP 1 Score: 164 bits (416), Expect = 8.410e-44 Identity = 103/283 (36.40%), Postives = 143/283 (50.53%), Query Frame = 1 Query: 1 YKAPEERVSSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQ---------------------------------------APAAAQ--FDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLE 726 Y+APE+RV S +APPSSVARPNY D +RR V+VVV++H++ C+R+ P A + FDP KA +F+E+H+ +P R FV G A ALP + + +V + P P V+ I++F+ +F ACLSSECS++CLIY+ERLM +A VPLL +TWKP+VL LLLASK+WQDLSSWN EF++V PE+++ I++LE Sbjct: 216 YRAPEKRVPSAVAPPSSVARPNYHDAIRR-VAVVVFQHVQNCERRLARVKRAAEHPPRPPPTRAPPHAPFGGGQPGGVSAPLPVTPGAVREAFDPAKADLFHERHYVSPRYRCT--FVRALGA----------------------------------------------------AGALPCSAFAMAKVETEPTAPSVEAIYEFIRTLFNRACLSSECSLVCLIYIERLMEVAAVPLLATTWKPVVLCGLLLASKVWQDLSSWNVEFSTVYPEFSLRSINRLE 443
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: W4G411_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G411_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.780e-40 Identity = 107/263 (40.68%), Postives = 143/263 (54.37%), Query Frame = 1 Query: 1 YKAPEERV--SSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQAPAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARL----FSFCXXXXXXXXLALMVACKMPSCSHLGMTRAS------------RYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+AP+ RV S T+APPSSVA+PNY D LRR VSVV+Y+HI+ C+ K E TL + + + A ST AA + F F L S+LG++R S +Y F++ P M P Y + +V P VDEIF F N+F A LS+EC+++CLIY+ERLM A +PLL S+WKPIVL LLLASK+WQDLSSWN E ++V P++ + I++LE F Sbjct: 50 YRAPDARVDVSETLAPPSSVAKPNYDDSLRR-VSVVLYQHIRRCE--------------KRMRESKSGGGTLSGGFHGLFHSNSAPASSTHAAAVEDEPFPFDSSTVLNGQTVL---------SNLGVSRESVFDEEHFVTPQYKYQFVRLP-MLHPLTYYKMDKVSCKTHIPSVDEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERASIPLLGSSWKPIVLCGLLLASKVWQDLSSWNVEISNVYPQFPLHSINRLERLF 287
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A5D6XKS8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKS8_9STRA) HSP 1 Score: 148 bits (374), Expect = 9.150e-39 Identity = 98/248 (39.52%), Postives = 138/248 (55.65%), Query Frame = 1 Query: 1 YKAPEERVSSTIAPPS---SVARPNYQDFLRRAVSVVVYKHIKTCQRQAPAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+ P++RV+S +APPS SVA+PNY DFLRR VSVV+Y+H++ C+++ + + +P L VS G A +A L L + +T +Y F++ P + P + + +V S P VDEIF F N+F A LS+EC+++CLIY+ERLM A VPLL TWKPIVL LLLASK+WQDLSSWN E +++ P+Y + I++LE F Sbjct: 72 YRKPDDRVTS-LAPPSAVSSVAQPNYDDFLRR-VSVVLYQHLRRCEKRHSEELRGPSVVSSTVGVDRGTSPFLSAV---VSREGEPDALELPSAPLAPSTGPSSTTSPRLLELPVDEIFREEHFVTPQYKYTFVRLPRV-FPMTSFVMEKVSSKRHVPSVDEIFRFCKNLFNKAQLSAECTIVCLIYIERLMEQANVPLLAVTWKPIVLCGLLLASKVWQDLSSWNVEISNIYPQYPLHSINRLERLF 313
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A6G0WM95_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM95_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.390e-38 Identity = 101/250 (40.40%), Postives = 142/250 (56.80%), Query Frame = 1 Query: 1 YKAPEERV--SSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQAPAAAQFDPDKAKMFNEKHFRTPTL---RVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+AP+ RV S + PPSSVA+PNY D LRR VSVV+Y+HI+ C+++ K+ F P V+ +++ + S DA+ + LAL K+ H ++ +Y FI+ P M P Y + +V P VDEIF F N+F A LS+EC+++CLIY+ERLM A +PLL S+WKPIVL LLLASK+WQDLSSWN E ++V P++ + I++LE F Sbjct: 49 YRAPDARVDVSEALPPPSSVAKPNYDDSLRR-VSVVLYQHIRRCEKR------MRDSKSTAFQGLFSSNPANASGEVSSSTINDEDPDNSVSFDASTVLH---GHTLLSGLALSPD-KVFDEEHF-VSPQYKYQFIRVP-MLHPLTFYKMDKVTCKTHIPSVDEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERANIPLLGSSWKPIVLCGLLLASKVWQDLSSWNVEISNVYPQFPLHSINRLERLF 285
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A485KW34_9STRA (Aste57867_12616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW34_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.990e-38 Identity = 100/253 (39.53%), Postives = 136/253 (53.75%), Query Frame = 1 Query: 1 YKAPEERV--SSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQ------APAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+ P RV S T+ PPSSVA+PNY D LRR VSVV+Y+HI+ C+++ A F P + E PT G A D + S + K+ H +T +Y F++ P M P Y + +V P VDEIF F N+F A LS+EC+++CLIY+ERLM A +PLL ++WKPIVL LLLASK+WQDLSSWN E ++V P++ + I++LE F Sbjct: 49 YREPHARVDVSETLPPPSSVAKPNYDDSLRR-VSVVLYQHIRRCEKRMRESKGASLPGLFRPLSTSVMTESAMDDPTAD---------NLGMASMPDDSFDSSTVMNGQTVLSGLNLSPDKVFDEEHF-VTPQYKYQFVRLP-MLHPLTYYKMDKVSCKTHLPSVDEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERANIPLLGASWKPIVLCGLLLASKVWQDLSSWNVEISNVYPQFPLHSINRLERLF 289
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A1V9Y8F2_9STRA (Cyclin-Y n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8F2_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.760e-38 Identity = 98/247 (39.68%), Postives = 146/247 (59.11%), Query Frame = 1 Query: 1 YKAPEERV--SSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQAPAAAQFDPDKAKMFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+APE RV S T+APPSSVA+PNY D LRR VSVV+Y+HI+ C+++ + + + + + + P + + +S R ES DA+ + L L + K+ H ++ +Y F++ M P Y + +V P V+EIF F N+F A LS+EC+++CLIY+ERLM A +PLL S+WKPIVL LLL+SK+WQDLSSWN E +++ P++ + I++LE F Sbjct: 49 YRAPEARVDLSETLAPPSSVAKPNYDDSLRR-VSVVLYQHIRRCEKRI---REKEAMASMIVSYEATTLPPESIPEQSLS-RSEQRTESFDASAMHG---ANGILSGLQLSIE-KVFDEEHF-VSPQYKYTFVRLSTMH-PLTYYRMEKVNCKTHIPSVEEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERANIPLLGSSWKPIVLCGLLLSSKVWQDLSSWNVEISNIYPQFPLHCINRLERLF 284
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A024GT47_9STRA (Cyclin N-terminal domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GT47_9STRA) HSP 1 Score: 147 bits (370), Expect = 4.940e-38 Identity = 102/255 (40.00%), Postives = 143/255 (56.08%), Query Frame = 1 Query: 1 YKAPEERVSSTIAPP---SSVARPNYQDFLRRAVSVVVYKHIKTCQRQ--APAAAQFDPDKAK---MFNEKHFRTPTLRVA--QCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+ P++RV S +APP SSV PNY DFLRR VSVV+Y+H++ C+++ AA + + AK F E +T L A + S + +++ D S+ + +T RY FI+ P + P Y + +V S P+V+EIF F ++F A LS EC+++CLIY+ERLM A VPLL +TWKPIVL LLLASK+WQDLSSWN EF + P+Y + I++LE F Sbjct: 79 YRKPDDRVQS-LAPPTSVSSVVNPNYDDFLRR-VSVVLYQHLRRCEKRFHEQQAALININAAKNEGRFLEDSPQTDALNTARKEALASCGSSSSSQTIDNRYRASWSNDQNLSSFKLNDIPIDELFREEHFVTPQYRYKFIRHPRLH-PLTTYLMEKVTSKAHVPNVEEIFRFCQHLFQKAQLSPECTIVCLIYIERLMEQADVPLLAATWKPIVLCGLLLASKVWQDLSSWNVEFNCIYPQYPLTCINRLERLF 330
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Match: A0A1V9ZAD2_9STRA (Cyclin-Y-like protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZAD2_9STRA) HSP 1 Score: 145 bits (367), Expect = 5.390e-38 Identity = 96/248 (38.71%), Postives = 143/248 (57.66%), Query Frame = 1 Query: 1 YKAPEERV--SSTIAPPSSVARPNYQDFLRRAVSVVVYKHIKTCQRQAPAAAQFDPDKAKMFNEKHFR-TPTLRVAQCFVSNRGTGCAESTDAARLFSFCXXXXXXXXLALMVACKMPSCSHLGMTRASRYNFIQPPAMALPGHVYTLREVPSIPKTPDVDEIFDFVTNIFVNACLSSECSVICLIYVERLMTLARVPLLESTWKPIVLGSLLLASKMWQDLSSWNGEFASVCPEYAVDKIDKLEVKF 735 Y+AP+ RV S T+APPSSVA+PNY D LRR VSVV+Y+HI+ C+++ A + P++ + +R ES D++ + L L + K+ H ++ +Y F++ P + P Y + +V P V+EIF F N+F A LS+EC+++CLIY+ERLM A +PLL S+WKPIVL LLL+SK+WQDLSSWN E +++ P++ + I++LE F Sbjct: 49 YRAPDARVDVSETLAPPSSVAKPNYDDSLRR-VSVVLYQHIRRCEKRLRETAHLATSSQVSYGATTLSGEPSVEASMSRSDHR----TESFDSSTVHP---PNGILSGLQLSLD-KVFDEEHF-VSPQYKYTFVRLPTLH-PLTYYRMDKVNCKTHIPSVEEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERANIPLLGSSWKPIVLCGLLLSSKVWQDLSSWNVEISNIYPQFPLHCINRLERLF 285 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10244.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10244.1.1 >prot_A-nodosum_M_contig10244.1.1 ID=prot_A-nodosum_M_contig10244.1.1|Name=mRNA_A-nodosum_M_contig10244.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=209bp MFNEKHFRTPTLRVAQCFVSNRGTGCAESTDAARLFSFCCCCCCCCCLALback to top mRNA from alignment at A-nodosum_M_contig10244:1715..4006- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10244.1.1 ID=mRNA_A-nodosum_M_contig10244.1.1|Name=mRNA_A-nodosum_M_contig10244.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2292bp|location=Sequence derived from alignment at A-nodosum_M_contig10244:1715..4006- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10244:1715..4006- >mRNA_A-nodosum_M_contig10244.1.1 ID=mRNA_A-nodosum_M_contig10244.1.1|Name=mRNA_A-nodosum_M_contig10244.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=627bp|location=Sequence derived from alignment at A-nodosum_M_contig10244:1715..4006- (Ascophyllum nodosum dioecious)back to top |