mRNA_A-nodosum_M_contig10243.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig10243.2.1
Unique Name	mRNA_A-nodosum_M_contig10243.2.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: D8LR02_ECTSI (Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR02_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.150e-22
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 1

Query:    1 ARFVTPCFHTGLVRAYSDFVIRGLALQGETRYASPPSKKVVVTWMARRSSVQ 156
            AR VTPCFHT LVRAYSDFVIRGL LQG T YASPPSKKVVVTWMARRSSVQ
Sbjct:  406 ARMVTPCFHTALVRAYSDFVIRGLDLQGMTSYASPPSKKVVVTWMARRSSVQ 457

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: A0A6H5JCY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.850e-18
Identity = 47/71 (66.20%), Postives = 47/71 (66.20%), Query Frame = 1

Query:    1 ARFVTPCFHTGLVRAYSDFVIR-------------------GLALQGETRYASPPSKKVVVTWMARRSSVQ 156
            AR VTPCFHT LVRAYSDFVIR                   GL LQG T YASPPSKKVVVTWMARRSSVQ
Sbjct:  125 ARMVTPCFHTALVRAYSDFVIRLVFCSNNNLVFVSKTVRGRGLDLQGMTSYASPPSKKVVVTWMARRSSVQ 195

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: F0YEW7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW7_AURAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1

Query:   13 TPCFHTGLVRAYSDFVIRGLALQGETRYASPPS--KKVVVTWMARRSS 150
            T C  + +VRAYSDFVIRGL LQG  RYA+P    K VVVT++ARRSS
Sbjct:  477 TRCKASSVVRAYSDFVIRGLGLQGAARYAAPDGDPKDVVVTFLARRSS 524

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: A0A8J2WYB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYB3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-8
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1

Query:    1 ARFVTPCFHTGLVRAYSDFVIRGLALQGETRYASPPS-KKVVVTWMARRSS 150
            A F T C  + +VRAYSDFVIR L LQ  TRY + P+ ++VVVT+MARRSS
Sbjct:  381 ASFNTKCARSSIVRAYSDFVIRALGLQLRTRYHTKPNPQRVVVTFMARRSS 431

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: A0A7S2MDM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:    1 ARFVTPCFHTGLVRAYSDFVIRGLALQGETRYASPPSKKVVVTWMARRSS 150
            A + TPC HT LVRAY+D+V+RGL L  E   A   SK V VTWMARR+S
Sbjct:  415 ASWQTPCKHTPLVRAYADYVVRGLELVQEP--ALWTSKTVTVTWMARRAS 462

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BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Match: A0A482SEX5_9ARCH (Glycosyltransferase family 61 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEX5_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 3.050e-7
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1

Query:    1 ARFVTPCFHTGLVRAYSDFVIRGLALQGETRYA-SPPSKKVVVTWMARRSS 150
            A + TPC  T L+RA++DFVIRGL LQ  T YA S PSK V V+++ RR S
Sbjct:   65 ASWDTPCKRTALMRAWADFVIRGLGLQAYTHYAMSQPSKVVRVSYLTRRPS 115

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig10243.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LR02_ECTSI	3.150e-22	90.38	Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus s...	[more]
A0A6H5JCY8_9PHAE	2.850e-18	66.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
F0YEW7_AURAN	1.140e-8	64.58	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A8J2WYB3_9STRA	1.550e-8	60.78	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S2MDM3_9STRA	1.390e-7	60.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A482SEX5_9ARCH	3.050e-7	56.86	Glycosyltransferase family 61 protein n=1 Tax=arch...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig10243:6385..6944+
coding sequence from alignment at A-nodosum_M_contig10243:6385..6944+

protein sequence of mRNA_A-nodosum_M_contig10243.2.1

>prot_A-nodosum_M_contig10243.2.1 ID=prot_A-nodosum_M_contig10243.2.1|Name=mRNA_A-nodosum_M_contig10243.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
ARFVTPCFHTGLVRAYSDFVIRGLALQGETRYASPPSKKVVVTWMARRSS
VQ

mRNA from alignment at A-nodosum_M_contig10243:6385..6944+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig10243.2.1 ID=mRNA_A-nodosum_M_contig10243.2.1|Name=mRNA_A-nodosum_M_contig10243.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at A-nodosum_M_contig10243:6385..6944+ (Ascophyllum nodosum dioecious)
GCGAGATTCGTCACGCCCTGTTTCCACACAGGTCTCGTCAGAGCCTATTC
CGACTTCGTCATCAGGTACACAGCTACAGCTACCGCAGCCAGTCAGTAGT
ATTAATTACTAGATAGTAAAGTACCACATTTTCAATAACGTCAGTTTTTA
TGTTACTTAAAAATTGGAGCTGAGAGTTTTTCCCTATACCTTGGTTCGTA
CGATTATGTTATGTGTCTATTTTGTCGTACAATAATAAAGTATCATAGTA
AGTAACTGCATTAGCTCTAGAGCTATGCCTGCATTATGCCATTATACCAG
TACTTGGCATTAACGTGATAACTAAACGTTTTGATATTTTTTTGGCCCCC
AGACTGGGGGATGCTCAGAAGGTCTATTATAGATGCGTTCAGATTCTTCT
TTAAACTATGGACAATATTCCGCTCTCTGCCCTGTCGAATAATGGCGAAA
AAAACGCCGGCGAGAGAAGAGGCCTTGCCCTGCAGGGGGAAACCCGCTAT
GCGTCCCCTCCCTCGAAGAAGGTGGTGGTGACCTGGATGGCTAGAAGATC
TTCTGTACAG

Coding sequence (CDS) from alignment at A-nodosum_M_contig10243:6385..6944+

>mRNA_A-nodosum_M_contig10243.2.1 ID=mRNA_A-nodosum_M_contig10243.2.1|Name=mRNA_A-nodosum_M_contig10243.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig10243:6385..6944+ (Ascophyllum nodosum dioecious)
GCGAGATTCGTCACGCCCTGTTTCCACACAGGTCTCGTCAGAGCCTATTC
CGACTTCGTCATCAGAGGCCTTGCCCTGCAGGGGGAAACCCGCTATGCGT
CCCCTCCCTCGAAGAAGGTGGTGGTGACCTGGATGGCTAGAAGATCTTCT
GTACAG