mRNA_A-nodosum_M_contig1024.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1024.14.1
Unique NamemRNA_A-nodosum_M_contig1024.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1024.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1024contigA-nodosum_M_contig1024:121335..122292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size304
Hectar predicted targeting categorysignal peptide
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.4519-UTR-A-nodosum_M_contig1024:121334..1214491680866389.4519-UTR-A-nodosum_M_contig1024:121334..121449Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1024 121335..121449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.4664516-CDS-A-nodosum_M_contig1024:121449..1215401680866389.4664516-CDS-A-nodosum_M_contig1024:121449..121540Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1024 121450..121540 +
1680866389.4801514-CDS-A-nodosum_M_contig1024:122194..1222921680866389.4801514-CDS-A-nodosum_M_contig1024:122194..122292Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1024 122195..122292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1024.14.1prot_A-nodosum_M_contig1024.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1024 121450..122292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1024.14.1

>prot_A-nodosum_M_contig1024.14.1 ID=prot_A-nodosum_M_contig1024.14.1|Name=mRNA_A-nodosum_M_contig1024.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MAKNVARGAMLVLGLAASLAGAQYDDLNFEDMMGGYGDYGYGGGYGGYGG
YGGMGDMMPGLAG
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mRNA from alignment at A-nodosum_M_contig1024:121335..122292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1024.14.1 ID=mRNA_A-nodosum_M_contig1024.14.1|Name=mRNA_A-nodosum_M_contig1024.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=958bp|location=Sequence derived from alignment at A-nodosum_M_contig1024:121335..122292+ (Ascophyllum nodosum dioecious)
AGCCCTTTTCCAGTCCAGATAAGGGACAGAGAGAGAGAGAGAGATTTGAG
AGAGGAAAAGCTGGAGCAGTCAAGAGGCAAGGAAGGGACCATACTGGTAT
TAGTAGCTGGTAGCCATGGCGAAGAACGTTGCTCGTGGCGCGATGTTGGT
GCTAGGACTGGCAGCCTCTCTTGCTGGGGCTCAGTACGATGACCTCAATT
TCGAAGGTGATGGTACTAAAGAGAATGAAAGAAGAAGAAAATGAGGTGTC
GTAGACATTTTTGGAACAATCCTGTCTGTTGACAGCAGTAGTGTTAACAA
ACATGTGACAAATAAAAAAATAGAACCAAACAAAAAGAAACTGAAGCGCC
ATAGACATGGTGGCACAATCGAGTCTGTTAACAGCAGTAGTTATGAACAA
ACATGTAATGTAACAGAAAAATAAATAGAAATAAGACCAATAAAAGAGAT
GCGTCGTTGTCATTTTATTATCTCCAAGTTACAACTCCTTTCAACTAGTC
ATCTGTCTCTCTATAATATATAGTAAAGAGAACTATCAGTAGGCGTATCA
CTTGGCATTGCTCAAAATGATATACAAAAGTAAATAATACAATATATCAG
TCACAATAGAAACTAAACATCAATACTAAGCAAAGCATGTACACATTCAT
CTACTCATCTCTCTATCTCTCTAATAAATAAATGACGAGAGCTATACCTC
TTCGCATTGTTGTTGTCATCCAGCTCAAAGTGATCTATAGTAGTATTAAT
AGTATATAGGAGTAGTATATAATAGTCACAATAGAAGCACCAATACGAAA
CAAACCATGTACACATTCATCAAGTATAATTTTCCCCGTTTTTTTTTTTC
ACCTTGGCAGACATGATGGGCGGCTATGGAGATTACGGCTACGGGGGGGG
CTACGGAGGCTACGGGGGCTACGGGGGCATGGGTGACATGATGCCTGGGC
TGGCGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1024:121335..122292+

>mRNA_A-nodosum_M_contig1024.14.1 ID=mRNA_A-nodosum_M_contig1024.14.1|Name=mRNA_A-nodosum_M_contig1024.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1024:121335..122292+ (Ascophyllum nodosum dioecious)
ATGGCGAAGAACGTTGCTCGTGGCGCGATGTTGGTGCTAGGACTGGCAGC
CTCTCTTGCTGGGGCTCAGTACGATGACCTCAATTTCGAAGACATGATGG
GCGGCTATGGAGATTACGGCTACGGGGGGGGCTACGGAGGCTACGGGGGC
TACGGGGGCATGGGTGACATGATGCCTGGGCTGGCGGGC
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