mRNA_A-nodosum_M_contig10230.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10230.2.1
Unique NamemRNA_A-nodosum_M_contig10230.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: A0A6H5KS10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS10_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.300e-17
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   28 QHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDELTQGQVHIISSVEDWI 252
            QH+FAA+ +G+++  L  D L  + +GFYN+ A  GE TSVAYN V+DE+AISV A+D LT+G+V+++ S EDWI
Sbjct:   28 QHVFAASATGVSILKLGDD-LSLSELGFYNSMAAFGEPTSVAYNPVFDEVAISVKAFDPLTKGRVYVVKSSEDWI 101
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BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: D7FLI4_ECTSI (Alkaline phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 6.130e-16
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   28 QHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDELTQGQVHIISSVEDWI 252
            QH+FAA+ +G+++  L  D L    +GFY++  T GE TSVAYN V+DE+AISV A+D LT+G+V+++ S EDWI
Sbjct:   26 QHVFAASATGVSILKLGDD-LSLWELGFYDSMTTFGEPTSVAYNPVFDEVAISVRAFDPLTRGRVYVVKSCEDWI 99
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BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: A0A6H5KA01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA01_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.150e-9
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   28 QHLFAAATSGLTVFVL-----DSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDE------LTQGQVHIISSVEDWI 252
            QH+F A+  GLTV  L     +   L  + VG Y+ +A  GE TSVAYN V DELA+SV A D+      L++G V I  SV DWI
Sbjct:   69 QHVFLASDGGLTVLKLGDGSVEDGNLSRSLVGIYDLSA-EGETTSVAYNSVCDELAMSVKAIDDDGAEDPLSKGTVRIDPSVADWI 153
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KS10_9PHAE9.300e-1753.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLI4_ECTSI6.130e-1652.00Alkaline phosphatase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KA01_9PHAE2.150e-946.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10230contigA-nodosum_M_contig10230:14675..14932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FLI4
Model size260
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-16
EggNOG OGs2AY90@1|root,2S02S@2759|Eukaryota
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.4215815-CDS-A-nodosum_M_contig10230:14674..149321680866389.4215815-CDS-A-nodosum_M_contig10230:14674..14932Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10230 14675..14932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10230.2.1prot_A-nodosum_M_contig10230.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10230 14675..14932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10230.2.1

>prot_A-nodosum_M_contig10230.2.1 ID=prot_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
VRADGARRPQHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSV
AYNKVYDELAISVAAYDELTQGQVHIISSVEDWIT*
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mRNA from alignment at A-nodosum_M_contig10230:14675..14932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10230.2.1 ID=mRNA_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10230:14675..14932+ (Ascophyllum nodosum dioecious)
GTCCGTGCCGATGGCGCTCGCCGGCCGCAGCACCTCTTCGCGGCTGCCAC
CTCAGGACTCACCGTGTTCGTTCTGGATTCGGACACCCTCGACCCCACGT
TCGTCGGGTTCTACAACGCGACGGCTACCCACGGCGAAGCCACCTCCGTG
GCCTACAACAAGGTGTACGACGAGCTCGCGATTTCAGTGGCGGCATACGA
TGAGCTTACTCAGGGCCAAGTTCATATAATTTCTTCTGTCGAAGACTGGA
TCACGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10230:14675..14932+

>mRNA_A-nodosum_M_contig10230.2.1 ID=mRNA_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10230:14675..14932+ (Ascophyllum nodosum dioecious)
GTCCGTGCCGATGGCGCTCGCCGGCCGCAGCACCTCTTCGCGGCTGCCAC
CTCAGGACTCACCGTGTTCGTTCTGGATTCGGACACCCTCGACCCCACGT
TCGTCGGGTTCTACAACGCGACGGCTACCCACGGCGAAGCCACCTCCGTG
GCCTACAACAAGGTGTACGACGAGCTCGCGATTTCAGTGGCGGCATACGA
TGAGCTTACTCAGGGCCAAGTTCATATAATTTCTTCTGTCGAAGACTGGA
TCACGTGA
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