mRNA_A-nodosum_M_contig10230.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: A0A6H5KS10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS10_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 9.300e-17 Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1 Query: 28 QHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDELTQGQVHIISSVEDWI 252 QH+FAA+ +G+++ L D L + +GFYN+ A GE TSVAYN V+DE+AISV A+D LT+G+V+++ S EDWI Sbjct: 28 QHVFAASATGVSILKLGDD-LSLSELGFYNSMAAFGEPTSVAYNPVFDEVAISVKAFDPLTKGRVYVVKSSEDWI 101
BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: D7FLI4_ECTSI (Alkaline phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI4_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 6.130e-16 Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 28 QHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDELTQGQVHIISSVEDWI 252 QH+FAA+ +G+++ L D L +GFY++ T GE TSVAYN V+DE+AISV A+D LT+G+V+++ S EDWI Sbjct: 26 QHVFAASATGVSILKLGDD-LSLWELGFYDSMTTFGEPTSVAYNPVFDEVAISVRAFDPLTRGRVYVVKSCEDWI 99
BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Match: A0A6H5KA01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA01_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.150e-9 Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 28 QHLFAAATSGLTVFVL-----DSDTLDPTFVGFYNATATHGEATSVAYNKVYDELAISVAAYDE------LTQGQVHIISSVEDWI 252 QH+F A+ GLTV L + L + VG Y+ +A GE TSVAYN V DELA+SV A D+ L++G V I SV DWI Sbjct: 69 QHVFLASDGGLTVLKLGDGSVEDGNLSRSLVGIYDLSA-EGETTSVAYNSVCDELAMSVKAIDDDGAEDPLSKGTVRIDPSVADWI 153 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10230.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10230.2.1 >prot_A-nodosum_M_contig10230.2.1 ID=prot_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp VRADGARRPQHLFAAATSGLTVFVLDSDTLDPTFVGFYNATATHGEATSVback to top mRNA from alignment at A-nodosum_M_contig10230:14675..14932+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10230.2.1 ID=mRNA_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10230:14675..14932+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10230:14675..14932+ >mRNA_A-nodosum_M_contig10230.2.1 ID=mRNA_A-nodosum_M_contig10230.2.1|Name=mRNA_A-nodosum_M_contig10230.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10230:14675..14932+ (Ascophyllum nodosum dioecious)back to top |