mRNA_A-nodosum_M_contig1023.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1023.1.1
Unique NamemRNA_A-nodosum_M_contig1023.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 9.020e-44
Identity = 72/130 (55.38%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRGRQSSGVEAWFVWKV 390
            CGS  DAI  VL     +V+TND N  L AD H+DA S EF   F  EG+RP+W VTSPPY NA + +  A  +  VGVAFKLRLSFLEP  +R +WL +NPPS V+VL RA Y GR  S  EAWF+W +
Sbjct:   32 CGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHL 161          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.190e-22
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 CGSRGDAISHVLSERGCSVTTNDINRML-----PADGHMDAASVEFVEHFL--EEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVI 321
            CG  GDAI+  L    C V TNDI+  L     P D ++DA+   F   FL  + G+RP+W +TSPPY+ AL +VK+A  +A  GVA KL LSFLEP   R  WL  NPP+  +
Sbjct:  107 CGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 83.6 bits (205), Expect = 1.450e-17
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   19 AISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRG--RQSSGVEAWFVWK 387
            AIS+ L E G SV T DI     AD   D A+      + +  +  +W VT+PP+ +A   +  A   A+VGVAF LRLS+LEP   R QWL E+PP  +IVL R  + G  +  S   AW +WK
Sbjct:   48 AISNRLKEDGLSVITTDI-----ADNPQDDAT---THQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPK-LIVLPRISFTGDGKVDSCTCAWMIWK 163          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.190e-14
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  229 VGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRGRQSSGVEAWFVWKV 390
            +GVAFKLRL+FL P  SR +WL +NPP  +++L RA YR R+ S  E WFVW+ 
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.720e-12
Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = -2
Query:   99 TITVEGGFSVNHCARETTGSRKLSLSLKATPTVAIRQAFLTNVKAFL*GGLVTNHSGRRPSSRKCSTNSTLAASI 323
            T  V     ++HC     GSRK+SLSL ATPT  I +A     KA L GGLVT HSGRRPSS+K STN ++ ASI
Sbjct:  162 TTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.030e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFL--EEGRRPEWFVTSPPYRNALTFVKNACRIATVGV 237
            CG   DA++  L    C V TND++   PAD ++DA+   F + F     G+RP+W VTSP Y++ALTFVK A  +AT GV
Sbjct:  120 CGGPTDAVATRLGPT-CEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGV 199          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 5.870e-8
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   22 ISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWL 294
            I+  L+  G ++ TNDI+     D   DA         L  G   +W VT+PP+  A   + NA   A VGVAF LRLS++EPV +RA WL
Sbjct:   41 IARALAGNGRTIFTNDIDPNHGCDFASDATDPFAFCWGLYGGI--DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWL 129          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.110e-7
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   97 HMDAASVEFVEHFLEE--GRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPV 273
            ++DA+ V F + F+++  G++P+W VTSPPY+ ++ FV  A  +AT GVA KL L    PV
Sbjct:   89 NLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPV 149          
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B)

HSP 1 Score: 52.0 bits (123), Expect = 3.000e-5
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  157 EWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAM------YRGRQSSGVE-AWFVW 384
            +W +T+PP+ +A  F++ A RIA  GVAF +RL++LE         T+ PPS V V +  +      +  + S+    AW+VW
Sbjct:  102 DWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVW 184          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE9.020e-4455.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.190e-2246.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A252D8B1_9NOSO1.450e-1741.60Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A6H5K6T5_9PHAE3.190e-1455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE5.720e-1254.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD58_9PHAE1.030e-1145.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V5ZCZ4_9BACT5.870e-840.66Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A6H5L1N5_9PHAE3.110e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E0E050B3.000e-534.94SAM-dependent DNA methyltransferase n=2 Tax=Microv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1023contigA-nodosum_M_contig1023:48723..49407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size396
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons2
Evalue9.79e-11
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size396
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.3774536-CDS-A-nodosum_M_contig1023:48722..488021680866389.3774536-CDS-A-nodosum_M_contig1023:48722..48802Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1023 48723..48802 +
1680866389.3910813-CDS-A-nodosum_M_contig1023:49091..494071680866389.3910813-CDS-A-nodosum_M_contig1023:49091..49407Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1023 49092..49407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1023.1.1prot_A-nodosum_M_contig1023.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1023 48723..49407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1023.1.1

>prot_A-nodosum_M_contig1023.1.1 ID=prot_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGR
RPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTE
NPPSTVIVLSRAMYRGRQSSGVEAWFVWKVQQ
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mRNA from alignment at A-nodosum_M_contig1023:48723..49407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1023.1.1 ID=mRNA_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=685bp|location=Sequence derived from alignment at A-nodosum_M_contig1023:48723..49407+ (Ascophyllum nodosum dioecious)
TGCGGTAGCCGCGGCGATGCAATTAGTCACGTACTTTCAGAGCGCGGATG TTCGGTAACCACGAACGATATCAACCGCATGTGAGTGGGATACCGTAAAC AGGAGTATCGATTTCTTACAATTTACCCCTCACCGAAAGAAAAGCGCCTT TATATAGCGTGCTTGTAAATGTACAGTGTTCTGAGAATTGGTGTCATCTC CAATACATGTTCTAGCACAAACATTTTGTATGGCGTACGCGTGGCTTGAA ATAAAAATATCAAAGCGCAGGGCTGGTGGTGGTGAAACGTTTCGACCCAA GAACGTCAGGCGTAACGGCCTGACCCTACCTCCTCCGTCTTCTTTTCGAT GTGGCAAATTGAACGCTAGGTTACCCGCAGATGGTCATATGGATGCAGCG AGTGTGGAGTTCGTCGAACACTTCCTGGAGGAGGGCCGCCGCCCCGAGTG GTTTGTGACAAGCCCACCTTACAGGAACGCCTTGACGTTCGTCAAGAATG CTTGTCGGATCGCCACAGTAGGTGTGGCTTTTAAGCTTAGACTTAGTTTC CTTGAGCCGGTCGTTTCTCGGGCACAGTGGTTGACGGAAAACCCTCCTTC TACAGTGATAGTACTGAGCCGCGCCATGTACAGGGGCCGGCAGTCTTCGG GGGTTGAAGCCTGGTTCGTGTGGAAAGTTCAACAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1023:48723..49407+

>mRNA_A-nodosum_M_contig1023.1.1 ID=mRNA_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig1023:48723..49407+ (Ascophyllum nodosum dioecious)
TGCGGTAGCCGCGGCGATGCAATTAGTCACGTACTTTCAGAGCGCGGATG
TTCGGTAACCACGAACGATATCAACCGCATGTTACCCGCAGATGGTCATA
TGGATGCAGCGAGTGTGGAGTTCGTCGAACACTTCCTGGAGGAGGGCCGC
CGCCCCGAGTGGTTTGTGACAAGCCCACCTTACAGGAACGCCTTGACGTT
CGTCAAGAATGCTTGTCGGATCGCCACAGTAGGTGTGGCTTTTAAGCTTA
GACTTAGTTTCCTTGAGCCGGTCGTTTCTCGGGCACAGTGGTTGACGGAA
AACCCTCCTTCTACAGTGATAGTACTGAGCCGCGCCATGTACAGGGGCCG
GCAGTCTTCGGGGGTTGAAGCCTGGTTCGTGTGGAAAGTTCAACAG
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