mRNA_A-nodosum_M_contig1023.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 150 bits (379), Expect = 9.020e-44 Identity = 72/130 (55.38%), Postives = 86/130 (66.15%), Query Frame = 1 Query: 1 CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRGRQSSGVEAWFVWKV 390 CGS DAI VL +V+TND N L AD H+DA S EF F EG+RP+W VTSPPY NA + + A + VGVAFKLRLSFLEP +R +WL +NPPS V+VL RA Y GR S EAWF+W + Sbjct: 32 CGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHL 161
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.190e-22 Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 1 CGSRGDAISHVLSERGCSVTTNDINRML-----PADGHMDAASVEFVEHFL--EEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVI 321 CG GDAI+ L C V TNDI+ L P D ++DA+ F FL + G+RP+W +TSPPY+ AL +VK+A +A GVA KL LSFLEP R WL NPP+ + Sbjct: 107 CGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 83.6 bits (205), Expect = 1.450e-17 Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 19 AISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRG--RQSSGVEAWFVWK 387 AIS+ L E G SV T DI AD D A+ + + + +W VT+PP+ +A + A A+VGVAF LRLS+LEP R QWL E+PP +IVL R + G + S AW +WK Sbjct: 48 AISNRLKEDGLSVITTDI-----ADNPQDDAT---THQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPK-LIVLPRISFTGDGKVDSCTCAWMIWK 163
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.190e-14 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 Query: 229 VGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAMYRGRQSSGVEAWFVWKV 390 +GVAFKLRL+FL P SR +WL +NPP +++L RA YR R+ S E WFVW+ Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 5.720e-12 Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = -2 Query: 99 TITVEGGFSVNHCARETTGSRKLSLSLKATPTVAIRQAFLTNVKAFL*GGLVTNHSGRRPSSRKCSTNSTLAASI 323 T V ++HC GSRK+SLSL ATPT I +A KA L GGLVT HSGRRPSS+K STN ++ ASI Sbjct: 162 TTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.030e-11 Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 1 CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFL--EEGRRPEWFVTSPPYRNALTFVKNACRIATVGV 237 CG DA++ L C V TND++ PAD ++DA+ F + F G+RP+W VTSP Y++ALTFVK A +AT GV Sbjct: 120 CGGPTDAVATRLGPT-CEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGV 199
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 5.870e-8 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1 Query: 22 ISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWL 294 I+ L+ G ++ TNDI+ D DA L G +W VT+PP+ A + NA A VGVAF LRLS++EPV +RA WL Sbjct: 41 IARALAGNGRTIFTNDIDPNHGCDFASDATDPFAFCWGLYGGI--DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWL 129
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.110e-7 Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 97 HMDAASVEFVEHFLEE--GRRPEWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPV 273 ++DA+ V F + F+++ G++P+W VTSPPY+ ++ FV A +AT GVA KL L PV Sbjct: 89 NLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPV 149
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B) HSP 1 Score: 52.0 bits (123), Expect = 3.000e-5 Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 157 EWFVTSPPYRNALTFVKNACRIATVGVAFKLRLSFLEPVVSRAQWLTENPPSTVIVLSRAM------YRGRQSSGVE-AWFVW 384 +W +T+PP+ +A F++ A RIA GVAF +RL++LE T+ PPS V V + + + + S+ AW+VW Sbjct: 102 DWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVW 184 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1023.1.1 >prot_A-nodosum_M_contig1023.1.1 ID=prot_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp CGSRGDAISHVLSERGCSVTTNDINRMLPADGHMDAASVEFVEHFLEEGRback to top mRNA from alignment at A-nodosum_M_contig1023:48723..49407+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1023.1.1 ID=mRNA_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=685bp|location=Sequence derived from alignment at A-nodosum_M_contig1023:48723..49407+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1023:48723..49407+ >mRNA_A-nodosum_M_contig1023.1.1 ID=mRNA_A-nodosum_M_contig1023.1.1|Name=mRNA_A-nodosum_M_contig1023.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig1023:48723..49407+ (Ascophyllum nodosum dioecious)back to top |