mRNA_A-nodosum_M_contig10223.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10223.1.1
Unique NamemRNA_A-nodosum_M_contig10223.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10223contigA-nodosum_M_contig10223:5048..6398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.2853792-CDS-A-nodosum_M_contig10223:5047..51461680866389.2853792-CDS-A-nodosum_M_contig10223:5047..5146Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10223 5048..5146 -
1680866389.2960029-CDS-A-nodosum_M_contig10223:6218..63981680866389.2960029-CDS-A-nodosum_M_contig10223:6218..6398Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10223 6219..6398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10223.1.1prot_A-nodosum_M_contig10223.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10223 5048..6398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10223.1.1

>prot_A-nodosum_M_contig10223.1.1 ID=prot_A-nodosum_M_contig10223.1.1|Name=mRNA_A-nodosum_M_contig10223.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
DRDRLEANLRQTLGKKKGKKGASKKGATRGGSKASVPVSAGGDRGFGAAV
AGKGQGTVPQVSPRKAAAFIAPDADAAVGGADDSDRVPSTAV*
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mRNA from alignment at A-nodosum_M_contig10223:5048..6398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10223.1.1 ID=mRNA_A-nodosum_M_contig10223.1.1|Name=mRNA_A-nodosum_M_contig10223.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1351bp|location=Sequence derived from alignment at A-nodosum_M_contig10223:5048..6398- (Ascophyllum nodosum dioecious)
GATCGAGATAGGCTCGAGGCCAATCTCCGACAGACGCTCGGCAAGAAGAA
GGGCAAGAAAGGCGCGAGCAAAAAGGGGGCGACAAGAGGGGGCAGCAAGG
CTTCCGTCCCCGTTTCGGCGGGTGGCGACAGGGGTTTCGGTGCTGCGGTT
GCAGGGAAGGGGCAAGGGACTGTTCCGCAGGCGAGTATGTGGGGTTTCAG
CGAGAAGCGGGGGGGATTGAGGAAGTTTTGGTGGCCCCCGTGGGCGCGCG
TATCCTGGTCTTGCTGGAAACTACTGTACAAACAACGTAGCACCAACTTT
GTTCCTGGCTTTCCACGCTCCTCGTCTTTCCTCCGCGTGAAAAAAAGTCC
GAAAAAAAGTTAGGTGAAGTCTCTTGGAGCTTCTGTACGCATAATCATGT
AGGGTTTGATGCGCACTTAAAAACGAAGTAATTTTCTCGCGTGCCTTCAT
ATATGGCGGGTGGGGGGGTTCCACTTAAAACAGTATTTTGGTGAGATAAA
GAACGAACTTTTTGTTTTAAGAACGGGGCCCGAAATTTTACGTTTTGAAC
CACCTCGCCGATTTGGCTCGGCGACGGCTCAGGCGAAAGCTCTTATCCAT
ACAACCACGTAAAAGAAAAAGATGAAACTATACGATGCTGTTCCAATCAA
GAGTTACAGTGGTTTAAGAAAAAAATCCCAATGGTCAGTAAAGTTGCCAG
GAATCGATTTGTCTCACGAGAAACGCCATATTTGCTGTAACGGGGTCGGG
AGTTGGTCGATACTCTTGACCGAGGTGTTGAACTGTTCCCATGGTCAAGT
CCTTTTGTTTGAGCGTAGTCAATAGGTATAACTCGCAAAAAGGGCGTGCG
CTACGTGAATAAACGTCTTCTGATCTTTAAAGAAAAGCTCGTTCTTTAAA
AAAAAGTTCGTTCTTTATTGGATTTTTGGCGTGGGCGGGTGCTTTGATGA
GTTGAAAACCAGGTTTGGGTGTTAGGTGTGGCGTTTAACGGATATGTCCC
CTGAGTTCTTGGGAAGGGGGAGATATCGAAACAGTCCCTCCTGTAATAGA
CGGATTTCATAAATCCTCGAGTGAAAAAAAACGGATTCTGTTTGGGGCAT
TCTTTTCTGTTAGTCTTTAAATCGAGGGCAGGGAAGGGGGTGTTTTGATA
TCGTCCCCTCTTGACTTCAGGGGATACATTGACCGGATCCCTCCCCCACT
GCCCCCCCCCCCCCTGTCCCTCCGCAAAAAAAAAACTTCAATAACACATC
AGGTATCTCCGAGAAAAGCTGCCGCGTTTATTGCACCAGACGCAGATGCT
GCTGTGGGAGGAGCTGATGACTCCGATAGAGTGCCCTCAACAGCAGTGTA
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10223:5048..6398-

>mRNA_A-nodosum_M_contig10223.1.1 ID=mRNA_A-nodosum_M_contig10223.1.1|Name=mRNA_A-nodosum_M_contig10223.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig10223:5048..6398- (Ascophyllum nodosum dioecious)
GATCGAGATAGGCTCGAGGCCAATCTCCGACAGACGCTCGGCAAGAAGAA
GGGCAAGAAAGGCGCGAGCAAAAAGGGGGCGACAAGAGGGGGCAGCAAGG
CTTCCGTCCCCGTTTCGGCGGGTGGCGACAGGGGTTTCGGTGCTGCGGTT
GCAGGGAAGGGGCAAGGGACTGTTCCGCAGGTATCTCCGAGAAAAGCTGC
CGCGTTTATTGCACCAGACGCAGATGCTGCTGTGGGAGGAGCTGATGACT
CCGATAGAGTGCCCTCAACAGCAGTGTAG
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