mRNA_A-nodosum_M_contig10220.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10220.1.1
Unique NamemRNA_A-nodosum_M_contig10220.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10220.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10220contigA-nodosum_M_contig10220:6168..10547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons6
Cds size603
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10220.1.1prot_A-nodosum_M_contig10220.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10220 6168..10255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.1427884-CDS-A-nodosum_M_contig10220:6167..62741680866389.1427884-CDS-A-nodosum_M_contig10220:6167..6274Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 6168..6274 +
1680866389.15145-CDS-A-nodosum_M_contig10220:7467..75421680866389.15145-CDS-A-nodosum_M_contig10220:7467..7542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 7468..7542 +
1680866389.159348-CDS-A-nodosum_M_contig10220:8067..81581680866389.159348-CDS-A-nodosum_M_contig10220:8067..8158Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 8068..8158 +
1680866389.169058-CDS-A-nodosum_M_contig10220:8953..90141680866389.169058-CDS-A-nodosum_M_contig10220:8953..9014Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 8954..9014 +
1680866389.184174-CDS-A-nodosum_M_contig10220:9463..95901680866389.184174-CDS-A-nodosum_M_contig10220:9463..9590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 9464..9590 +
1680866389.1971622-CDS-A-nodosum_M_contig10220:10113..102551680866389.1971622-CDS-A-nodosum_M_contig10220:10113..10255Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10220 10114..10255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.2130327-UTR-A-nodosum_M_contig10220:10255..105471680866389.2130327-UTR-A-nodosum_M_contig10220:10255..10547Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10220 10256..10547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10220.1.1

>prot_A-nodosum_M_contig10220.1.1 ID=prot_A-nodosum_M_contig10220.1.1|Name=mRNA_A-nodosum_M_contig10220.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=201bp
MVEGDEDVVLLEEGPFRLTASCQTINYTNSDWDDVYFYSSHYYSTYISST
YLGFNSTSSSSFPSDSSTFSYGYDDDYTDDYNDNYVHSDSIAALELTFTA
SDSDYLFGSPTYIRYPHEERIVGSYEAGESRTQIILRGRDGGYSQDSTLQ
SLSGSYITTNGANTIGAHKSQTRWYPYNEESSFPEGVDCLVAGVISYTAS
*
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mRNA from alignment at A-nodosum_M_contig10220:6168..10547+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10220.1.1 ID=mRNA_A-nodosum_M_contig10220.1.1|Name=mRNA_A-nodosum_M_contig10220.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4380bp|location=Sequence derived from alignment at A-nodosum_M_contig10220:6168..10547+ (Ascophyllum nodosum dioecious)
ATGGTAGAAGGCGACGAGGACGTGGTACTTCTCGAAGAAGGGCCCTTTAG
GCTCACGGCTTCTTGCCAAACCATCAACTACACCAACAGCGACTGGGACG
ACGTCTAGTGAGTGCCACACTTGAACCAAATCGGTTCGTTGTTATTCCAC
TTGTAAATTAGATAGTATGTGTCATTTACAAAATGGGCGTACTACGTACC
ACGTACCCAGTACGTATTATGCATGTGGGTGTATCTATATATATAGAGAG
AGAGCTATGTATGTAGTCTATGGATTTATTATGTACTACACATACATAAT
CGCGCAGTCGCATCCCCCACTGGGGGTGTATGTATTTATGTATGTGTGTA
TGTATGTATAGCCGTGTATATATTGTATCGTCACTTTTATCAGACTTGGC
GCGAACTGGTTAAGGTTTACAAACCTGTTCGTGGTCAACCGAACTGGTAC
AATCAAACTCTCCCCGTCTGCGCTCGATTTTTTTTTCTCGCGATACAGGC
TCGGCCGTCCCATCCCGCATCAGTCCGCTCATTCTCCACGCCCAAACTGT
ATTATACCTTAATATCATATTATTTGGCGCGTTTCACGAAGGGTGCATTT
CTTTGTATATTACCCTAGTATAATTTATATACCGTATTACACAGTAAACA
ACATTTTGGTGAAATAAAGAACAAAGTATTTTTTAAAGAACGAGGATTGC
TAAGTTTAAAGGGGCCTGTGGGGTAGACGTATCCGGTAATAATTGTTTGC
CCAAACAAGTGCTTCAAAGTGACTATTAATATCTGTGACGACCAACAGAA
TTGTAAACGCCATATAAGAACGTGGAAATGTTTCCGATAAGCAGTTATGA
AATTTCTTTATGCAAAATGTATTCCATCGGAATCGTTTCCGATTGTATGT
CTCGGAAAAAAATCCGTTCAACTCCAAACCGGAATAACTTGTTTGGTCGC
AAAATGAAAAGTTCGTCAAACTATTTGTTCATCCGTCTCACAGACGTTAT
TGTCAGAAACAAACATCGCGAACTTCAGTTGCTTTTAAAATTGGAGAATG
GTGATGTCCGCTGTAATCAATATATCGCCTGGCTCCTTGAAATCTACCAA
TCCTCGTTCTTAAAAAAATAGTTTGTTCTTTATTTCACAAAAATGTTGTT
AGTACAGGTGGTCAGCTTACTGCCGTATTTTCTCGACAAAACCTCTGTCC
GACTTTCGAGCATACTATCATAGTGCAAGTGAAATCATATGCCCCCCGCC
CCCGCCTCCTAACATTGGCAGCGTTGATTTTCACGATTCTTGCGTTTCAG
CTTCTACTCTTCCCACTACTACTCCACCTATATCTCGTCTACCTACCTCG
GCTTTAACTCCACCTCCTCGTCAAGGCAAGTCTACACTATTTTGAGGCAC
ATGCATTGATGGCACTAGCCCAGTTTCAGCTCGGGTCGTCGAGTGCGAAC
ATCGACAAATGGTATTGGATGGATTCAAACATCGTACGCACCGATTTAGT
TCAAAGAACCTCGTTTAGCAGCGTTTTGATCGACACGCGGGAAATCGCGT
TTTTTGCCGTTGTCGCCGAATATGGACTACGATCCACCCTTCACTTGAGT
GTCGTATCTCATTTCGAACCCCAGCCAGCGCGACGACCGGAACCTAAGGC
GAATATTTCCCACGCGGATGGTGTATGCTTTCACTTTTAAACCGCGGAGT
AGATGACTTGGATCCTCCATCGCGCAAAATAGCGTTCATTGACGCATGGA
AAGGCGCCTGACACGATCTGTATCGATCGATGATAACTTCACGATTGCGA
AGAAGGTTGTCGAACCATCGTTCTCGAAATATTTCACGCTTTGCTGCTGG
CAACATCCACGTCGACTTATAACATCATCTTGATTGACCATCATCGGCAG
CTTCCCATCGGACTCAAGTACCTTCAGCTACGGCTATGACGACGACTATA
CGGACGACTACAATGACAACTATGTTCACTCCGACAGCATCGTGAGTATG
ATGTAACTAACCCCTTAGTCCATGCGCAAAACAAAACAGGAAAGCGCAGT
TAAAATATTCGGAATCCAACAAAGAGTGTAAGCTATAAAGACTACTAATA
TTAATGTGTTATTATTAATATTGGTGTGTTATTATTAATATTAATGTGTT
ATTATTAATATTGGTGTGTTATTATTAATATTAATGTGTTAATATTAATA
TTAATATGTTGGTACTGTTAATGGGTAACCTTCTTATTTATTCCTTTTTA
TTCCTTTTTGTAGTGGTACTCCATAGTGGTACTCCGGTACAAGTTTTTTC
GCGTTTCTGTATATAACGACAGACCGGGCACTAAAAGGATTAATGATGCT
GTATCTTGAAACTTCAAGATGGCGGTTGCCAGACACCGGGGACCTTACTG
TCCTTTATGATATGGAAAAGTGTGCGTTCGAACCTCTCCGAGAGAGACTA
AAAGACAGTTAGAGGGGGCAAAGGGGTCCGTGTTCAGATGAGCTATCCAG
GATGTTGCTCGGTGTGGTGATTTCGATTTTATACAACAAAAACCGAACAA
AATAACTCGTAAAACTCTGGAGCTCAAATTTGACTTCGCGGAGTTGTTTT
TGGGGCCAACGGGCAACCATCGACGGCCACCTTCGATGGTCGAATAAACC
CCAGCTGTCGTGGAAGGTATTCCCGATGTACACACACACATGAATATATA
TATACCGGTATATACTTGTAATGTTTCATATCGCCAAACTTCTGTGCTCG
GACGACTTCTCCCGTTGGCGTGATAATCTTACGCAGGCCGCGCTTGAGCT
GACCTTCACAGCCAGTGACTCCGACTACCTCTTCGGCTCGCCCACCTGTG
AGAGAACCTATATTATTAGTAATGTAATGAACAACAGTGATGTCTGTACC
TGTGCTAACTCGAGTTGAAACGCCTATACTACCCGATCATAGTGGTTGAC
TCGATCGAAACACACACATGAGCACATACAAGTGCGCTTGGGGTGGGGAC
TTGTTTCTTAACGAAACGTGTTCGCCTTCAAGTACTATCGGTACTGCCGT
ATTAGCTCCAGAACGGTAGCTAATTTCCGGCTACAATACACAGTGCTCTC
ACCCTCTCTTGGGCTTTCTGTGGGCTAAGGCATGAAGCGGTTGGCGCATT
CTCGATCACGAAGTGGGATTCTCCCGCTCTGGGAAAGAAAGGTGTAGCAG
AGCAGGTGCTGCACATTATGTGCCTTTCCGCACCATCATAGCTCCCTCGG
CATGTCACCCGAGATTCTTGCCGTTGTCCTCCGGTTTTCGCCACAGACAT
TCGTTACCCTCACGAGGAGAGAATCGTAGGTAGCTACGAGGCCGGAGAGA
GCCGCACCCAGATCATTCTCCGCGGGAGAGATGGCGGTTACTCCCAAGAT
AGCACCCTTCAGTCCCTATCTGGGTGAGTGCGCAACCGATACTCTAAGGC
ATTAGACCTATAGGGGTACGTGATGGTGGATAGCAACTGTACTCCAAAGT
TTCTACGTTGTTGGCTAACGACAGAGCCACACACAAAATTGCGTCAGGCA
CATACCACGTAGTTATTCATGAAAGTGGCGTGATTGGTACGTAATTGGTC
GAAGGTTACCTCATCGTCCCGTCTAATACGTCTGCGTGAATCTATGTGGG
TCGATGCAGCATGCGTCTGTTTGCGTTTAGTCTCGCGAGCTGTCTTGCCG
AAAGCGTTTCCTCGCTTTCCGTCTACAACACGTTTCGCGTGGGAAGACGA
GGTTGGGATAGCGAGGGGTTGGCTGGTGGTGCCAGATTTTTTATTTGGTT
TCGGAAATCAACGTTTACCCTTACATCGAACGATCGGCAAAGGACCCACC
CGTCCTACACACAAGGGATCGTTTTCTCTATGGTCCGTCTTCTGTGCCGA
TCTCATTACCCCCTGGATTCCTTCTTTCCTACCTCATTGTGAGCAGGAGC
TACATCACCACCAACGGCGCCAACACCATCGGCGCCCACAAATCGCAAAC
TAGGTGGTACCCGTACAACGAGGAAAGTTCTTTCCCCGAAGGGGTCGACT
GCCTGGTTGCCGGCGTGATCAGCTACACGGCCTCCTAAGTAACCGCCTAG
CTTCTAGCCTTCCACCCATTCCATTCATGGTCTCTCTAAGCCCCCACCTC
ATCCAGCAAGAGACTGGGATCATTTGGTGTGGCTTGTGCATAATCAGCAC
TACTTGCGATGTGTTTAAAATAGCTTAATCTTTGGGCACCTCAAGTATAG
GTAGCGTAGGATCGTTTTTCTTTGTGTACGCATTAAGTTGGACTGATATA
TGACCGCCTTCTTTTCTCTGGTACAGTATCCTCATAGTCATGGCTATTCA
AATATATAATATAGCTTATACTAAGCAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10220:6168..10547+

>mRNA_A-nodosum_M_contig10220.1.1 ID=mRNA_A-nodosum_M_contig10220.1.1|Name=mRNA_A-nodosum_M_contig10220.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=603bp|location=Sequence derived from alignment at A-nodosum_M_contig10220:6168..10547+ (Ascophyllum nodosum dioecious)
ATGGTAGAAGGCGACGAGGACGTGGTACTTCTCGAAGAAGGGCCCTTTAG
GCTCACGGCTTCTTGCCAAACCATCAACTACACCAACAGCGACTGGGACG
ACGTCTACTTCTACTCTTCCCACTACTACTCCACCTATATCTCGTCTACC
TACCTCGGCTTTAACTCCACCTCCTCGTCAAGCTTCCCATCGGACTCAAG
TACCTTCAGCTACGGCTATGACGACGACTATACGGACGACTACAATGACA
ACTATGTTCACTCCGACAGCATCGCCGCGCTTGAGCTGACCTTCACAGCC
AGTGACTCCGACTACCTCTTCGGCTCGCCCACCTACATTCGTTACCCTCA
CGAGGAGAGAATCGTAGGTAGCTACGAGGCCGGAGAGAGCCGCACCCAGA
TCATTCTCCGCGGGAGAGATGGCGGTTACTCCCAAGATAGCACCCTTCAG
TCCCTATCTGGGAGCTACATCACCACCAACGGCGCCAACACCATCGGCGC
CCACAAATCGCAAACTAGGTGGTACCCGTACAACGAGGAAAGTTCTTTCC
CCGAAGGGGTCGACTGCCTGGTTGCCGGCGTGATCAGCTACACGGCCTCC
TAA
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